Wall clock time and date at job start Sun Mar 29 2020 21:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46975 * 2 1 4 4 H 1.09007 * 109.46586 * 303.28932 * 3 2 1 5 5 C 1.50695 * 109.47098 * 183.29104 * 3 2 1 6 6 H 1.08002 * 120.00241 * 239.99422 * 5 3 2 7 7 C 1.37875 * 120.00139 * 59.99930 * 5 3 2 8 8 N 1.31513 * 120.00026 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99886 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47103 * 89.99941 * 9 7 5 11 11 H 1.48502 * 109.46948 * 209.99925 * 9 7 5 12 12 H 1.48496 * 109.47189 * 329.99477 * 9 7 5 13 13 N 1.46901 * 109.47369 * 63.28765 * 3 2 1 14 14 C 1.46898 * 110.99666 * 64.94365 * 13 3 2 15 15 C 1.46905 * 110.99991 * 188.90159 * 13 3 2 16 16 C 1.54263 * 110.02684 * 181.22192 * 15 13 3 17 17 C 1.54897 * 104.19242 * 217.10088 * 16 15 13 18 18 C 1.54893 * 102.74553 * 37.94873 * 17 16 15 19 19 C 1.53877 * 110.03132 * 64.05852 * 15 13 3 20 20 H 1.09001 * 109.47533 * 64.62948 * 1 2 3 21 21 H 1.09005 * 109.47151 * 184.62420 * 1 2 3 22 22 H 1.08996 * 109.47610 * 304.62101 * 1 2 3 23 23 H 1.08998 * 109.47497 * 240.00126 * 2 1 3 24 24 H 1.09005 * 109.47418 * 119.99258 * 2 1 3 25 25 H 0.97004 * 120.00074 * 179.97438 * 8 7 5 26 26 H 1.09002 * 109.46972 * 181.89268 * 14 13 3 27 27 H 1.09001 * 109.46813 * 61.89956 * 14 13 3 28 28 H 1.08995 * 109.47632 * 301.89376 * 14 13 3 29 29 H 1.08993 * 110.01590 * 302.66382 * 15 13 3 30 30 H 1.08999 * 110.49247 * 335.77959 * 16 15 13 31 31 H 1.09003 * 110.48254 * 98.43322 * 16 15 13 32 32 H 1.08998 * 110.75663 * 279.63351 * 17 16 15 33 33 H 1.09000 * 110.90828 * 156.33466 * 17 16 15 34 34 H 1.08996 * 110.48327 * 203.37983 * 18 17 16 35 35 H 1.08998 * 110.48499 * 80.73167 * 18 17 16 36 36 H 1.09004 * 110.02570 * 238.57064 * 19 15 13 37 37 H 1.08996 * 110.03360 * 359.94527 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6292 1.9731 -0.8591 5 6 3.5447 1.4434 -0.0816 6 1 4.1280 1.8958 0.7068 7 6 4.1768 0.8666 -1.1626 8 7 3.4666 0.3153 -2.1224 9 14 6.0422 0.8670 -1.2633 10 1 6.5732 -0.3587 -0.6145 11 1 6.4609 0.8942 -2.6878 12 1 6.5751 2.0659 -0.5678 13 7 1.6162 2.1118 1.2372 14 6 2.2461 1.4944 2.4119 15 6 1.9028 3.5515 1.1816 16 6 1.4776 4.2261 2.5021 17 6 0.9172 5.6017 2.0626 18 6 0.1759 5.2635 0.7453 19 6 1.0751 4.2110 0.0646 20 1 -0.3634 0.4403 -0.9285 21 1 -0.3634 -1.0244 0.0829 22 1 -0.3634 0.5838 0.8456 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5137 0.8901 25 1 3.9113 -0.0902 -2.8832 26 1 1.8894 1.9871 3.3164 27 1 3.3286 1.6021 2.3423 28 1 1.9878 0.4361 2.4486 29 1 2.9659 3.7137 1.0041 30 1 0.7041 3.6400 2.9983 31 1 2.3383 4.3569 3.1581 32 1 1.7268 6.3081 1.8799 33 1 0.2238 5.9948 2.8061 34 1 0.0867 6.1512 0.1191 35 1 -0.8077 4.8448 0.9577 36 1 1.7367 4.6940 -0.6546 37 1 0.4615 3.4627 -0.4369 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037092745.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:00 Heat of formation + Delta-G solvation = -28.782027 kcal Electronic energy + Delta-G solvation = -15176.207820 eV Core-core repulsion = 12952.072723 eV Total energy + Delta-G solvation = -2224.135097 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.01515 -37.14626 -34.33303 -32.83930 -29.89461 -28.72927 -28.19449 -25.91447 -24.19270 -21.55799 -21.02653 -20.18250 -18.15277 -17.27383 -16.65804 -16.41126 -15.60077 -14.94757 -14.46180 -14.44410 -14.09662 -13.76738 -13.36112 -13.18423 -12.85964 -12.61000 -12.45132 -12.32546 -12.05479 -11.88675 -11.77605 -11.57643 -11.56518 -11.45596 -11.29901 -11.14296 -10.87998 -10.40176 -8.85697 -8.01457 -6.23995 1.34173 1.36088 1.44458 2.38968 3.15372 3.49717 3.83911 3.93009 4.21885 4.53386 4.63183 4.67164 4.72888 4.76677 4.80459 4.86047 4.90846 4.93885 5.02849 5.13951 5.16815 5.18125 5.26426 5.32952 5.40505 5.43834 5.49326 5.55033 5.57660 5.68100 5.83792 6.09958 6.25168 6.44094 6.78369 6.99369 7.46165 8.92404 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028730 B = 0.011039 C = 0.009637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.342095 B = 2535.929094 C = 2904.899307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.107 4.107 3 C 0.218 3.782 4 H 0.010 0.990 5 C -0.549 4.549 6 H 0.046 0.954 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.943 3.057 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.275 1.275 13 N -0.528 5.528 14 C 0.036 3.964 15 C 0.082 3.918 16 C -0.111 4.111 17 C -0.115 4.115 18 C -0.112 4.112 19 C -0.113 4.113 20 H 0.031 0.969 21 H 0.045 0.955 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.030 0.970 25 H 0.261 0.739 26 H 0.073 0.927 27 H 0.007 0.993 28 H 0.054 0.946 29 H 0.010 0.990 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.041 6.728 7.334 11.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C 0.110 3.890 4 H 0.028 0.972 5 C -0.588 4.588 6 H 0.064 0.936 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.769 3.231 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.200 1.200 13 N -0.251 5.251 14 C -0.112 4.112 15 C -0.027 4.027 16 C -0.149 4.149 17 C -0.152 4.152 18 C -0.149 4.149 19 C -0.151 4.151 20 H 0.050 0.950 21 H 0.064 0.936 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.026 0.974 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.533 6.572 7.199 11.209 hybrid contribution 2.290 -0.327 -0.712 2.420 sum -3.243 6.246 6.487 9.571 Atomic orbital electron populations 1.21574 0.96253 0.99916 1.00608 1.21452 0.94527 0.98426 1.00160 1.19051 0.91238 0.91292 0.87397 0.97177 1.21984 0.94364 1.36828 1.05596 0.93630 1.25583 1.01676 0.95126 0.95500 1.70000 1.36201 1.38682 1.10135 0.85798 0.81816 0.78280 0.77181 1.20226 1.20808 1.20041 1.62624 1.56895 1.02063 1.03532 1.22201 0.96230 0.99403 0.93411 1.22167 0.95927 0.88584 0.96057 1.22433 1.00535 0.96447 0.95477 1.22438 0.99748 0.95944 0.97104 1.22280 0.98320 0.97635 0.96679 1.22099 0.97996 0.97862 0.97192 0.94963 0.93594 0.92215 0.92191 0.95170 0.93016 0.90871 0.97448 0.92679 0.97168 0.90559 0.92119 0.91570 0.89531 0.90867 0.91228 0.93954 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 9.84 71.98 0.71 -4.42 16 2 C -0.11 -5.20 5.10 30.59 0.16 -5.05 16 3 C 0.22 10.96 1.51 44.17 0.07 11.03 16 4 H 0.01 0.58 6.40 -2.38 -0.02 0.57 16 5 C -0.55 -30.23 7.07 25.60 0.18 -30.05 16 6 H 0.05 2.55 5.84 -2.91 -0.02 2.53 16 7 C 0.02 1.16 5.30 84.65 0.45 1.61 16 8 N -0.91 -52.70 11.30 21.45 0.24 -52.46 16 9 Si 0.94 44.37 29.54 68.60 2.03 46.39 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 N -0.53 -22.34 3.78 -871.95 -3.30 -25.64 16 14 C 0.04 1.41 8.61 127.69 1.10 2.51 16 15 C 0.08 3.17 2.49 45.64 0.11 3.28 16 16 C -0.11 -3.28 5.13 31.67 0.16 -3.11 16 17 C -0.11 -2.78 6.91 31.89 0.22 -2.56 16 18 C -0.11 -3.00 6.83 31.67 0.22 -2.79 16 19 C -0.11 -4.15 5.84 31.32 0.18 -3.97 16 20 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 21 H 0.04 1.64 8.14 -2.38 -0.02 1.63 16 22 H 0.06 2.30 7.57 -2.39 -0.02 2.29 16 23 H 0.06 3.29 5.99 -2.39 -0.01 3.28 16 24 H 0.03 1.43 6.33 -2.38 -0.02 1.42 16 25 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 26 H 0.07 2.38 6.53 -2.39 -0.02 2.36 16 27 H 0.01 0.30 6.25 -2.39 -0.01 0.29 16 28 H 0.05 2.17 6.28 -2.39 -0.02 2.16 16 29 H 0.01 0.46 7.04 -2.39 -0.02 0.45 16 30 H 0.08 2.20 7.40 -2.39 -0.02 2.18 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.05 2.09 6.73 -2.39 -0.02 2.08 16 Total: -1.00 -59.14 276.37 3.55 -55.60 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.02 Total: 9.61 kcal Atomic # 6 Polarization: -37.06 SS G_CDS: 3.56 Total: -33.51 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -3.05 Total: -78.09 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -59.14 3.55 -55.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037092745.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.814 kcal (2) G-P(sol) polarization free energy of solvation -59.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds