Wall clock time and date at job start Sun Mar 29 2020 21:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46997 * 2 1 4 4 N 1.46901 * 109.46958 * 240.00782 * 2 1 3 5 5 C 1.46892 * 111.00557 * 84.99786 * 4 2 1 6 6 C 1.50702 * 109.47527 * 179.97438 * 5 4 2 7 7 H 1.08007 * 119.99686 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00256 * 179.97438 * 6 5 4 9 9 N 1.31505 * 119.99900 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99952 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47301 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46906 * 120.00017 * 10 8 6 13 13 H 1.48493 * 109.47188 * 240.00264 * 10 8 6 14 14 C 1.52992 * 109.47224 * 119.99917 * 2 1 3 15 15 C 1.52997 * 109.47482 * 300.00294 * 14 2 1 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 2 17 17 C 1.53002 * 109.47233 * 299.99657 * 16 15 14 18 18 C 1.52997 * 109.46817 * 60.00194 * 17 16 15 19 19 C 1.52999 * 109.46961 * 60.00654 * 14 2 1 20 20 H 1.09004 * 109.47552 * 299.99728 * 1 2 3 21 21 H 1.09004 * 109.47298 * 59.99857 * 1 2 3 22 22 H 1.09001 * 109.46993 * 179.97438 * 1 2 3 23 23 H 1.00898 * 110.99704 * 321.03532 * 4 2 1 24 24 H 1.08996 * 109.46935 * 299.99799 * 5 4 2 25 25 H 1.09007 * 109.47471 * 59.99807 * 5 4 2 26 26 H 0.97010 * 120.00084 * 180.02562 * 9 8 6 27 27 H 1.09002 * 109.47103 * 180.02562 * 14 2 1 28 28 H 1.09002 * 109.47153 * 59.99783 * 15 14 2 29 29 H 1.09001 * 109.46832 * 299.99974 * 15 14 2 30 30 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 31 31 H 1.09004 * 109.46724 * 180.02562 * 16 15 14 32 32 H 1.08993 * 109.47662 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.47075 * 300.00932 * 17 16 15 34 34 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 35 35 H 1.09001 * 109.47289 * 180.02562 * 18 17 16 36 36 H 1.09000 * 109.47486 * 59.99547 * 19 14 2 37 37 H 1.09002 * 109.46716 * 299.99630 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6923 -1.1996 5 6 2.0824 0.2227 -2.3469 6 6 2.5884 -0.5213 -3.5558 7 1 2.8388 -1.5691 -3.4793 8 6 2.7317 0.1356 -4.7595 9 7 2.4273 1.4116 -4.8525 10 14 3.3597 -0.7865 -6.2578 11 1 3.6291 -2.2003 -5.8920 12 1 2.3358 -0.7403 -7.3324 13 1 4.6126 -0.1521 -6.7402 14 6 2.0400 -0.7212 1.2492 15 6 1.5300 0.0000 2.4984 16 6 2.0406 -0.7210 3.7476 17 6 1.5311 -2.1637 3.7479 18 6 2.0411 -2.8848 2.4987 19 6 1.5301 -2.1637 1.2491 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.4496 -1.4978 -1.4101 24 1 1.0870 0.6164 -2.5525 25 1 2.7588 1.0464 -2.1183 26 1 2.5278 1.8737 -5.6995 27 1 3.1300 -0.7208 1.2494 28 1 0.4400 -0.0001 2.4985 29 1 1.8933 1.0276 2.4984 30 1 3.1305 -0.7206 3.7474 31 1 1.6768 -0.2074 4.6376 32 1 1.8944 -2.6772 4.6380 33 1 0.4411 -2.1641 3.7481 34 1 3.1311 -2.8844 2.4984 35 1 1.6778 -3.9125 2.4986 36 1 1.8934 -2.6775 0.3591 37 1 0.4401 -2.1637 1.2491 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037240242.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:32 Heat of formation + Delta-G solvation = -38.212783 kcal Electronic energy + Delta-G solvation = -14454.072129 eV Core-core repulsion = 12229.528084 eV Total energy + Delta-G solvation = -2224.544045 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.94892 -35.59879 -32.85653 -30.88849 -30.46168 -28.03429 -25.99254 -23.45003 -22.54711 -21.37272 -20.29537 -18.64791 -16.41795 -15.20566 -14.80817 -14.44693 -14.06507 -13.96681 -13.84842 -13.60225 -12.67289 -12.07087 -11.95687 -11.94165 -11.87245 -11.53184 -11.24382 -10.94100 -10.79510 -10.69906 -10.60093 -10.48025 -10.06600 -9.97485 -9.71373 -9.57905 -9.05432 -8.45680 -7.17386 -6.00145 -4.01646 3.32664 3.39793 3.45071 4.45598 4.84645 4.90796 4.95730 5.23304 5.35854 5.37321 5.53757 5.63102 5.67475 5.71731 5.77945 5.80706 5.85265 5.93847 6.03118 6.14963 6.24388 6.32372 6.34880 6.39897 6.42964 6.57415 6.64446 6.79104 6.89006 7.34496 7.50585 7.83867 8.18746 8.47994 8.69878 9.08670 9.63275 11.11005 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.055817 B = 0.006164 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.517382 B = 4541.521199 C = 4794.160325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.086 3.914 3 H 0.067 0.933 4 N -0.684 5.684 5 C 0.193 3.807 6 C -0.512 4.512 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.898 3.102 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C -0.072 4.072 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.118 4.118 18 C -0.119 4.119 19 C -0.113 4.113 20 H 0.051 0.949 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.328 0.672 24 H -0.014 1.014 25 H 0.026 0.974 26 H 0.260 0.740 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.994 -4.915 14.850 15.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.025 4.025 3 H 0.086 0.914 4 N -0.313 5.313 5 C 0.067 3.933 6 C -0.550 4.550 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.726 3.274 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.091 4.091 15 C -0.155 4.155 16 C -0.155 4.155 17 C -0.155 4.155 18 C -0.156 4.156 19 C -0.151 4.151 20 H 0.070 0.930 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.144 0.856 24 H 0.004 0.996 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.318 -4.679 14.865 15.756 hybrid contribution -0.651 -0.182 -1.139 1.325 sum -2.969 -4.861 13.726 14.861 Atomic orbital electron populations 1.22593 0.98649 1.01453 1.01362 1.21498 0.91705 0.97703 0.91581 0.91426 1.60735 1.55409 1.10386 1.04782 1.19568 0.95136 0.91847 0.86773 1.21254 1.43189 0.96940 0.93667 0.92001 1.24988 0.95720 0.94915 0.99007 1.69975 1.49116 1.09029 1.25730 0.86449 0.78418 0.80009 0.82571 1.19675 1.21145 1.21024 1.21112 1.00503 0.94418 0.93061 1.21661 1.00668 0.98823 0.94352 1.21517 1.00691 0.95620 0.97686 1.21525 1.00451 0.95865 0.97693 1.21549 1.00731 0.98417 0.94940 1.21590 1.00059 0.95824 0.97588 0.92993 0.92814 0.92773 0.85551 0.99620 0.95634 0.93038 0.90999 0.92016 0.92367 0.92182 0.92686 0.92762 0.92399 0.92175 0.92672 0.91045 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 8.46 37.16 0.31 -2.60 16 2 C 0.09 1.53 2.42 -67.72 -0.16 1.37 16 3 H 0.07 1.30 7.80 -51.93 -0.40 0.90 16 4 N -0.68 -14.74 5.75 -108.00 -0.62 -15.36 16 5 C 0.19 5.15 5.24 -4.98 -0.03 5.12 16 6 C -0.51 -14.73 9.32 -34.44 -0.32 -15.05 16 7 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 8 C 0.05 1.59 5.46 -17.83 -0.10 1.49 16 9 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 10 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 C -0.07 -1.07 2.21 -90.63 -0.20 -1.27 16 15 C -0.12 -1.47 4.85 -26.73 -0.13 -1.60 16 16 C -0.12 -1.29 5.92 -26.73 -0.16 -1.44 16 17 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 18 C -0.12 -1.39 5.92 -26.70 -0.16 -1.55 16 19 C -0.11 -1.55 4.59 -26.70 -0.12 -1.67 16 20 H 0.05 0.72 6.43 -51.93 -0.33 0.39 16 21 H 0.05 0.96 7.45 -51.93 -0.39 0.58 16 22 H 0.05 0.81 6.42 -51.93 -0.33 0.48 16 23 H 0.33 6.82 7.72 -39.29 -0.30 6.52 16 24 H -0.01 -0.39 7.44 -51.93 -0.39 -0.78 16 25 H 0.03 0.74 8.06 -51.92 -0.42 0.32 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.06 0.76 6.43 -51.93 -0.33 0.42 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 1.09 7.21 -51.93 -0.37 0.71 16 37 H 0.06 0.76 6.43 -51.93 -0.33 0.42 16 LS Contribution 282.84 15.07 4.26 4.26 Total: -1.00 -29.44 282.84 -8.40 -37.84 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.54 Total: 1.43 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -1.22 Total: -18.60 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.11 Total: -41.87 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.44 -8.40 -37.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037240242.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.373 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds