Wall clock time and date at job start Sun Mar 29 2020 21:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46997 * 2 1 4 4 N 1.46901 * 109.46958 * 240.00782 * 2 1 3 5 5 C 1.46892 * 111.00557 * 84.99786 * 4 2 1 6 6 C 1.50702 * 109.47527 * 179.97438 * 5 4 2 7 7 H 1.08007 * 119.99686 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00256 * 179.97438 * 6 5 4 9 9 N 1.31505 * 119.99900 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99952 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47301 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46906 * 120.00017 * 10 8 6 13 13 H 1.48493 * 109.47188 * 240.00264 * 10 8 6 14 14 C 1.52992 * 109.47224 * 119.99917 * 2 1 3 15 15 C 1.52997 * 109.47482 * 300.00294 * 14 2 1 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 2 17 17 C 1.53002 * 109.47233 * 299.99657 * 16 15 14 18 18 C 1.52997 * 109.46817 * 60.00194 * 17 16 15 19 19 C 1.52999 * 109.46961 * 60.00654 * 14 2 1 20 20 H 1.09004 * 109.47552 * 299.99728 * 1 2 3 21 21 H 1.09004 * 109.47298 * 59.99857 * 1 2 3 22 22 H 1.09001 * 109.46993 * 179.97438 * 1 2 3 23 23 H 1.00898 * 110.99704 * 321.03532 * 4 2 1 24 24 H 1.08996 * 109.46935 * 299.99799 * 5 4 2 25 25 H 1.09007 * 109.47471 * 59.99807 * 5 4 2 26 26 H 0.97010 * 120.00084 * 180.02562 * 9 8 6 27 27 H 1.09002 * 109.47103 * 180.02562 * 14 2 1 28 28 H 1.09002 * 109.47153 * 59.99783 * 15 14 2 29 29 H 1.09001 * 109.46832 * 299.99974 * 15 14 2 30 30 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 31 31 H 1.09004 * 109.46724 * 180.02562 * 16 15 14 32 32 H 1.08993 * 109.47662 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.47075 * 300.00932 * 17 16 15 34 34 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 35 35 H 1.09001 * 109.47289 * 180.02562 * 18 17 16 36 36 H 1.09000 * 109.47486 * 59.99547 * 19 14 2 37 37 H 1.09002 * 109.46716 * 299.99630 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6923 -1.1996 5 6 2.0824 0.2227 -2.3469 6 6 2.5884 -0.5213 -3.5558 7 1 2.8388 -1.5691 -3.4793 8 6 2.7317 0.1356 -4.7595 9 7 2.4273 1.4116 -4.8525 10 14 3.3597 -0.7865 -6.2578 11 1 3.6291 -2.2003 -5.8920 12 1 2.3358 -0.7403 -7.3324 13 1 4.6126 -0.1521 -6.7402 14 6 2.0400 -0.7212 1.2492 15 6 1.5300 0.0000 2.4984 16 6 2.0406 -0.7210 3.7476 17 6 1.5311 -2.1637 3.7479 18 6 2.0411 -2.8848 2.4987 19 6 1.5301 -2.1637 1.2491 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.4496 -1.4978 -1.4101 24 1 1.0870 0.6164 -2.5525 25 1 2.7588 1.0464 -2.1183 26 1 2.5278 1.8737 -5.6995 27 1 3.1300 -0.7208 1.2494 28 1 0.4400 -0.0001 2.4985 29 1 1.8933 1.0276 2.4984 30 1 3.1305 -0.7206 3.7474 31 1 1.6768 -0.2074 4.6376 32 1 1.8944 -2.6772 4.6380 33 1 0.4411 -2.1641 3.7481 34 1 3.1311 -2.8844 2.4984 35 1 1.6778 -3.9125 2.4986 36 1 1.8934 -2.6775 0.3591 37 1 0.4401 -2.1637 1.2491 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037240242.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:32 Heat of formation + Delta-G solvation = -55.951215 kcal Electronic energy + Delta-G solvation = -14454.841325 eV Core-core repulsion = 12229.528084 eV Total energy + Delta-G solvation = -2225.313241 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.14664 -37.11759 -34.88183 -32.44988 -31.51626 -29.40914 -27.95260 -24.86992 -23.88674 -22.97921 -21.43280 -19.88772 -18.53369 -16.85527 -16.23445 -15.96486 -15.53536 -15.29438 -14.97945 -14.89712 -14.37925 -13.68187 -13.45530 -13.26618 -13.08695 -12.90104 -12.80676 -12.67057 -12.43825 -12.18222 -11.88155 -11.72974 -11.60043 -11.40053 -11.16037 -10.75720 -10.69679 -10.66983 -9.00982 -8.22912 -6.34251 1.40172 1.41086 1.55125 2.39640 3.10193 3.56084 3.86037 3.92539 4.04403 4.21306 4.39123 4.46182 4.55125 4.58195 4.68305 4.73355 4.78880 4.84823 4.93086 4.96911 5.12363 5.15468 5.20962 5.25671 5.33861 5.35055 5.39947 5.48859 5.50540 5.61523 5.65007 5.73527 6.04367 6.50045 6.77026 6.92979 7.37110 8.88925 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.055817 B = 0.006164 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.517382 B = 4541.521199 C = 4794.160325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.082 3.918 3 H 0.045 0.955 4 N -0.682 5.682 5 C 0.210 3.790 6 C -0.535 4.535 7 H 0.063 0.937 8 C 0.000 4.000 9 N -0.935 5.935 10 Si 0.974 3.026 11 H -0.262 1.262 12 H -0.277 1.277 13 H -0.278 1.278 14 C -0.064 4.064 15 C -0.114 4.114 16 C -0.115 4.115 17 C -0.115 4.115 18 C -0.117 4.117 19 C -0.111 4.111 20 H 0.078 0.922 21 H 0.027 0.973 22 H 0.067 0.933 23 H 0.333 0.667 24 H -0.039 1.039 25 H -0.007 1.007 26 H 0.265 0.735 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.312 -6.336 15.857 17.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.028 4.028 3 H 0.064 0.936 4 N -0.312 5.312 5 C 0.082 3.918 6 C -0.573 4.573 7 H 0.082 0.918 8 C -0.198 4.198 9 N -0.576 5.576 10 Si 0.798 3.202 11 H -0.186 1.186 12 H -0.202 1.202 13 H -0.204 1.204 14 C -0.083 4.083 15 C -0.151 4.151 16 C -0.153 4.153 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.148 4.148 20 H 0.097 0.903 21 H 0.046 0.954 22 H 0.086 0.914 23 H 0.151 0.849 24 H -0.021 1.021 25 H 0.011 0.989 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.642 -6.110 15.900 17.237 hybrid contribution -0.557 0.299 -1.409 1.544 sum -3.199 -5.811 14.491 15.937 Atomic orbital electron populations 1.22476 0.96829 1.02354 1.01393 1.21625 0.93234 0.96680 0.91306 0.93644 1.60636 1.56439 1.09887 1.04221 1.19184 0.92711 0.91569 0.88302 1.21601 1.43702 0.97206 0.94782 0.91848 1.25972 0.95583 0.95792 1.02449 1.70104 1.49854 1.10758 1.26874 0.85264 0.77899 0.78851 0.78142 1.18642 1.20210 1.20378 1.21009 0.99341 0.95397 0.92544 1.21632 1.01124 0.98565 0.93821 1.21512 1.00507 0.96010 0.97270 1.21520 1.00866 0.95326 0.97521 1.21530 1.00384 0.99029 0.94462 1.21552 1.00461 0.94739 0.98053 0.90313 0.95374 0.91379 0.84909 1.02146 0.98898 0.92643 0.92877 0.91111 0.92681 0.92584 0.90850 0.91086 0.91684 0.92791 0.91426 0.93004 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.44 8.46 71.98 0.61 -4.84 16 2 C 0.08 2.97 2.42 44.91 0.11 3.08 16 3 H 0.05 1.83 7.80 -2.39 -0.02 1.81 16 4 N -0.68 -30.29 5.75 -495.60 -2.85 -33.15 16 5 C 0.21 11.69 5.24 85.56 0.45 12.13 16 6 C -0.53 -31.38 9.32 25.60 0.24 -31.15 16 7 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 8 C 0.00 0.00 5.46 84.66 0.46 0.46 16 9 N -0.94 -57.80 13.29 21.44 0.28 -57.52 16 10 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 11 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 14 C -0.06 -1.86 2.21 -10.80 -0.02 -1.89 16 15 C -0.11 -2.64 4.85 30.59 0.15 -2.49 16 16 C -0.12 -2.22 5.92 30.60 0.18 -2.04 16 17 C -0.11 -2.05 5.92 30.59 0.18 -1.87 16 18 C -0.12 -2.47 5.92 30.61 0.18 -2.29 16 19 C -0.11 -2.88 4.59 30.61 0.14 -2.74 16 20 H 0.08 2.06 6.43 -2.39 -0.02 2.05 16 21 H 0.03 1.02 7.45 -2.38 -0.02 1.00 16 22 H 0.07 1.96 6.42 -2.39 -0.02 1.94 16 23 H 0.33 14.12 7.72 -89.70 -0.69 13.42 16 24 H -0.04 -2.32 7.44 -2.39 -0.02 -2.34 16 25 H -0.01 -0.43 8.06 -2.38 -0.02 -0.45 16 26 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 27 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 1.53 6.43 -2.39 -0.02 1.52 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.05 1.54 7.21 -2.39 -0.02 1.53 16 37 H 0.06 1.59 6.43 -2.39 -0.02 1.57 16 Total: -1.00 -64.05 282.84 2.46 -61.59 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.33 Total: 15.55 kcal Atomic # 6 Polarization: -36.30 SS G_CDS: 2.68 Total: -33.62 kcal Atomic # 7 Polarization: -88.10 SS G_CDS: -2.57 Total: -90.66 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -64.05 2.46 -61.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037240242.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.634 kcal (2) G-P(sol) polarization free energy of solvation -64.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds