Wall clock time and date at job start Sun Mar 29 2020 21:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86803 * 119.99825 * 2 1 4 4 H 1.48491 * 109.47151 * 270.00264 * 3 2 1 5 5 H 1.48505 * 109.47148 * 30.00610 * 3 2 1 6 6 H 1.48498 * 109.46978 * 150.00224 * 3 2 1 7 7 C 1.39585 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00387 * 179.97438 * 7 2 1 9 9 N 1.36121 * 119.99957 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00174 * 180.02562 * 9 7 2 11 11 O 1.21507 * 119.99921 * 359.97438 * 10 9 7 12 12 C 1.48827 * 120.00052 * 180.02562 * 10 9 7 13 13 O 1.21435 * 120.00200 * 359.97438 * 12 10 9 14 14 N 1.34784 * 120.00046 * 180.02562 * 12 10 9 15 15 C 1.46493 * 119.99864 * 179.72701 * 14 12 10 16 16 C 1.53001 * 109.47084 * 180.02562 * 15 14 12 17 17 C 1.52998 * 117.49650 * 243.62172 * 16 15 14 18 18 C 1.52995 * 117.50059 * 174.99811 * 16 15 14 19 19 H 0.96991 * 119.99866 * 359.97438 * 1 2 3 20 20 H 0.97005 * 119.99985 * 0.02562 * 9 7 2 21 21 H 0.97000 * 119.99339 * 0.02562 * 14 12 10 22 22 H 1.09007 * 109.47196 * 299.99538 * 15 14 12 23 23 H 1.09006 * 109.47678 * 59.99732 * 15 14 12 24 24 H 1.09000 * 115.55299 * 29.32287 * 16 15 14 25 25 H 1.09003 * 117.50441 * 359.97438 * 17 16 15 26 26 H 1.08997 * 117.50181 * 145.01905 * 17 16 15 27 27 H 1.09004 * 117.50332 * 214.97326 * 18 16 15 28 28 H 1.09001 * 117.50181 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.4916 2.0465 -1.4000 5 1 1.4416 2.6527 0.7002 6 1 3.5417 1.4402 0.7000 7 6 2.0082 -1.2088 -0.0005 8 1 3.0881 -1.2088 -0.0010 9 7 1.3276 -2.3877 -0.0005 10 6 2.0015 -3.5549 -0.0005 11 8 3.2166 -3.5548 -0.0010 12 6 1.2574 -4.8437 -0.0011 13 8 0.0430 -4.8438 -0.0011 14 7 1.9313 -6.0110 -0.0006 15 6 1.1988 -7.2797 0.0049 16 6 2.1931 -8.4426 0.0050 17 6 2.1902 -9.3745 -1.2084 18 6 1.6250 -9.8578 0.1287 19 1 -0.4849 0.8400 0.0004 20 1 0.3576 -2.3877 -0.0005 21 1 2.9013 -6.0109 0.0005 22 1 0.5752 -7.3353 0.8972 23 1 0.5691 -7.3396 -0.8828 24 1 3.1517 -8.2416 0.4832 25 1 1.4797 -9.1594 -2.0067 26 1 3.1470 -9.7867 -1.5288 27 1 2.2100 -10.5879 0.6879 28 1 0.5428 -9.9604 0.2096 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037242554.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:13 Heat of formation + Delta-G solvation = -54.638107 kcal Electronic energy + Delta-G solvation = -13446.140429 eV Core-core repulsion = 10883.792028 eV Total energy + Delta-G solvation = -2562.348401 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.51089 -37.80533 -36.91890 -34.47485 -33.50631 -31.38141 -27.50475 -25.53198 -22.61485 -22.43805 -20.93550 -19.27214 -18.30124 -17.06143 -16.11405 -15.58007 -15.02834 -14.74211 -14.23425 -13.97075 -13.72422 -13.39750 -12.71101 -12.27857 -11.76648 -11.68057 -11.46763 -11.19360 -10.69766 -10.51892 -10.41393 -10.32523 -10.23531 -9.71335 -8.70200 -8.26534 -8.21814 -6.66424 -3.98762 2.46182 3.15446 3.16079 3.21498 3.35986 3.70771 4.07278 4.29652 4.56658 4.77076 4.82088 5.06799 5.19408 5.23193 5.47302 5.61649 5.73794 5.79803 5.95784 6.03477 6.13641 6.80271 7.31679 7.70340 7.89493 8.33824 8.63729 8.96911 9.32693 9.85934 10.48534 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.086251 B = 0.005647 C = 0.005386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.555791 B = 4957.543796 C = 5197.136183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.030 3.970 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.306 4.306 8 H 0.113 0.887 9 N -0.499 5.499 10 C 0.394 3.606 11 O -0.598 6.598 12 C 0.512 3.488 13 O -0.548 6.548 14 N -0.713 5.713 15 C 0.151 3.849 16 C -0.168 4.168 17 C -0.178 4.178 18 C -0.173 4.173 19 H 0.280 0.720 20 H 0.405 0.595 21 H 0.410 0.590 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.112 0.888 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.123 -12.473 -0.343 12.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.437 4.437 8 H 0.130 0.870 9 N -0.133 5.133 10 C 0.179 3.821 11 O -0.487 6.487 12 C 0.297 3.703 13 O -0.425 6.425 14 N -0.367 5.367 15 C 0.027 3.973 16 C -0.186 4.186 17 C -0.215 4.215 18 C -0.210 4.210 19 H 0.091 0.909 20 H 0.240 0.760 21 H 0.246 0.754 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.130 0.870 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.859 -12.324 -0.341 12.468 hybrid contribution 0.221 0.710 -0.004 0.743 sum 2.080 -11.614 -0.345 11.804 Atomic orbital electron populations 1.69485 1.06523 1.29354 1.45359 1.25593 0.95633 1.00482 0.95922 0.85716 0.79366 0.79659 0.78779 1.19900 1.20516 1.18901 1.19885 0.93984 0.81889 1.47900 0.86970 1.41564 1.10498 1.04222 1.57054 1.18955 0.87811 0.84225 0.91139 1.90578 1.12892 1.86644 1.58568 1.20688 0.87492 0.85916 0.76211 1.90685 1.14085 1.88154 1.49583 1.45648 1.11153 1.04527 1.75379 1.20846 0.93178 0.81079 1.02189 1.22485 1.01282 0.91191 1.03652 1.23085 1.03028 1.03591 0.91748 1.22947 1.01299 0.96182 1.00579 0.90917 0.75985 0.75380 0.91216 0.91448 0.86994 0.88499 0.88668 0.88561 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.45 13.03 55.53 0.72 -22.73 15 2 C 0.03 0.80 5.51 -17.40 -0.10 0.70 15 3 Si 0.94 20.18 29.56 -169.99 -5.02 15.15 15 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 6 H -0.26 -5.64 7.11 56.52 0.40 -5.24 15 7 C -0.31 -8.50 9.67 -15.15 -0.15 -8.65 15 8 H 0.11 3.18 7.15 -52.49 -0.38 2.80 15 9 N -0.50 -13.52 5.25 -11.59 -0.06 -13.58 15 10 C 0.39 10.09 7.82 -11.88 -0.09 10.00 15 11 O -0.60 -16.21 16.03 5.36 0.09 -16.12 15 12 C 0.51 11.37 7.87 -11.87 -0.09 11.28 15 13 O -0.55 -13.10 16.47 5.42 0.09 -13.01 15 14 N -0.71 -12.47 5.55 -60.93 -0.34 -12.80 15 15 C 0.15 2.12 5.95 -4.04 -0.02 2.10 15 16 C -0.17 -1.81 5.85 -90.62 -0.53 -2.34 15 17 C -0.18 -1.67 10.18 -26.73 -0.27 -1.94 15 18 C -0.17 -1.53 10.25 -26.73 -0.27 -1.80 15 19 H 0.28 7.00 8.30 -40.82 -0.34 6.66 15 20 H 0.40 11.04 7.35 -40.82 -0.30 10.74 15 21 H 0.41 6.74 7.86 -40.82 -0.32 6.42 15 22 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.07 0.97 7.88 -51.93 -0.41 0.56 15 24 H 0.11 1.16 8.04 -51.93 -0.42 0.74 15 25 H 0.10 0.91 8.03 -51.93 -0.42 0.50 15 26 H 0.09 0.79 8.14 -51.93 -0.42 0.37 15 27 H 0.10 0.73 8.14 -51.93 -0.42 0.31 15 28 H 0.10 0.82 8.14 -51.93 -0.42 0.40 15 LS Contribution 257.47 15.07 3.88 3.88 Total: -1.00 -30.64 257.47 -5.24 -35.88 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -3.06 Total: 13.99 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -1.53 Total: 9.35 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.32 Total: -49.12 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: 0.18 Total: -29.13 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.64 -5.24 -35.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037242554.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.757 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds