Wall clock time and date at job start Sun Mar 29 2020 21:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86803 * 119.99825 * 2 1 4 4 H 1.48491 * 109.47151 * 270.00264 * 3 2 1 5 5 H 1.48505 * 109.47148 * 30.00610 * 3 2 1 6 6 H 1.48498 * 109.46978 * 150.00224 * 3 2 1 7 7 C 1.39585 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00387 * 179.97438 * 7 2 1 9 9 N 1.36121 * 119.99957 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00174 * 180.02562 * 9 7 2 11 11 O 1.21507 * 119.99921 * 359.97438 * 10 9 7 12 12 C 1.48827 * 120.00052 * 180.02562 * 10 9 7 13 13 O 1.21435 * 120.00200 * 359.97438 * 12 10 9 14 14 N 1.34784 * 120.00046 * 180.02562 * 12 10 9 15 15 C 1.46493 * 119.99864 * 179.72701 * 14 12 10 16 16 C 1.53001 * 109.47084 * 180.02562 * 15 14 12 17 17 C 1.52998 * 117.49650 * 243.62172 * 16 15 14 18 18 C 1.52995 * 117.50059 * 174.99811 * 16 15 14 19 19 H 0.96991 * 119.99866 * 359.97438 * 1 2 3 20 20 H 0.97005 * 119.99985 * 0.02562 * 9 7 2 21 21 H 0.97000 * 119.99339 * 0.02562 * 14 12 10 22 22 H 1.09007 * 109.47196 * 299.99538 * 15 14 12 23 23 H 1.09006 * 109.47678 * 59.99732 * 15 14 12 24 24 H 1.09000 * 115.55299 * 29.32287 * 16 15 14 25 25 H 1.09003 * 117.50441 * 359.97438 * 17 16 15 26 26 H 1.08997 * 117.50181 * 145.01905 * 17 16 15 27 27 H 1.09004 * 117.50332 * 214.97326 * 18 16 15 28 28 H 1.09001 * 117.50181 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.4916 2.0465 -1.4000 5 1 1.4416 2.6527 0.7002 6 1 3.5417 1.4402 0.7000 7 6 2.0082 -1.2088 -0.0005 8 1 3.0881 -1.2088 -0.0010 9 7 1.3276 -2.3877 -0.0005 10 6 2.0015 -3.5549 -0.0005 11 8 3.2166 -3.5548 -0.0010 12 6 1.2574 -4.8437 -0.0011 13 8 0.0430 -4.8438 -0.0011 14 7 1.9313 -6.0110 -0.0006 15 6 1.1988 -7.2797 0.0049 16 6 2.1931 -8.4426 0.0050 17 6 2.1902 -9.3745 -1.2084 18 6 1.6250 -9.8578 0.1287 19 1 -0.4849 0.8400 0.0004 20 1 0.3576 -2.3877 -0.0005 21 1 2.9013 -6.0109 0.0005 22 1 0.5752 -7.3353 0.8972 23 1 0.5691 -7.3396 -0.8828 24 1 3.1517 -8.2416 0.4832 25 1 1.4797 -9.1594 -2.0067 26 1 3.1470 -9.7867 -1.5288 27 1 2.2100 -10.5879 0.6879 28 1 0.5428 -9.9604 0.2096 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037242554.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:12 Heat of formation + Delta-G solvation = -77.501232 kcal Electronic energy + Delta-G solvation = -13447.131848 eV Core-core repulsion = 10883.792028 eV Total energy + Delta-G solvation = -2563.339820 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.30565 -39.31816 -38.32709 -36.42670 -35.09046 -33.44184 -28.96476 -27.41447 -24.31136 -23.22106 -22.01036 -21.01206 -20.31980 -18.79179 -17.70021 -17.08086 -16.74221 -16.47526 -15.75123 -15.53149 -15.07170 -14.83737 -14.49029 -13.94645 -13.67603 -12.97129 -12.59019 -12.41545 -12.35196 -12.34576 -12.10281 -11.67175 -11.36083 -11.15721 -10.28786 -10.25140 -10.15773 -8.66715 -6.11797 0.58551 1.41088 1.47231 1.55970 1.80708 2.29070 2.36091 2.86990 3.14647 3.29719 3.67336 3.96745 4.02313 4.10329 4.26181 4.62697 4.68397 4.81791 5.03706 5.14927 5.24610 5.28149 5.36648 5.67220 6.15392 6.38180 6.80402 7.00644 7.26886 7.78796 8.49216 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.086251 B = 0.005647 C = 0.005386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.555791 B = 4957.543796 C = 5197.136183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.005 4.005 3 Si 1.011 2.989 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.346 4.346 8 H 0.099 0.901 9 N -0.510 5.510 10 C 0.389 3.611 11 O -0.617 6.617 12 C 0.517 3.483 13 O -0.568 6.568 14 N -0.691 5.691 15 C 0.148 3.852 16 C -0.182 4.182 17 C -0.175 4.175 18 C -0.157 4.157 19 H 0.289 0.711 20 H 0.401 0.599 21 H 0.417 0.583 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.119 0.881 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.114 0.886 28 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.650 -13.147 -0.355 13.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.210 4.210 3 Si 0.832 3.168 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.117 0.883 9 N -0.144 5.144 10 C 0.174 3.826 11 O -0.507 6.507 12 C 0.300 3.700 13 O -0.448 6.448 14 N -0.344 5.344 15 C 0.026 3.974 16 C -0.201 4.201 17 C -0.212 4.212 18 C -0.195 4.195 19 H 0.099 0.901 20 H 0.235 0.765 21 H 0.254 0.746 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.136 0.864 25 H 0.113 0.887 26 H 0.127 0.873 27 H 0.132 0.868 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.394 -13.044 -0.355 13.267 hybrid contribution 0.047 0.795 -0.005 0.796 sum 2.441 -12.249 -0.360 12.495 Atomic orbital electron populations 1.69551 1.07856 1.30864 1.45092 1.26568 0.96520 1.03534 0.94336 0.84679 0.77995 0.74929 0.79214 1.18922 1.19077 1.18749 1.19997 0.93724 0.83061 1.50792 0.88270 1.41661 1.10249 1.04804 1.57697 1.19602 0.87868 0.85235 0.89908 1.90544 1.13781 1.87288 1.59074 1.20090 0.87007 0.86010 0.76903 1.90675 1.14614 1.88362 1.51137 1.45641 1.11580 1.04409 1.72769 1.21074 0.93920 0.80337 1.02084 1.22386 1.00969 0.90903 1.05811 1.23185 1.03788 1.02612 0.91644 1.23069 1.01859 0.94553 0.99990 0.90057 0.76466 0.74607 0.91284 0.91571 0.86351 0.88717 0.87302 0.86760 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.46 13.03 21.77 0.28 -48.18 15 2 C -0.01 -0.28 5.51 85.14 0.47 0.19 15 3 Si 1.01 40.87 29.56 68.60 2.03 42.90 15 4 H -0.26 -10.27 7.11 99.48 0.71 -9.57 15 5 H -0.27 -10.12 7.11 99.48 0.71 -9.42 15 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 15 7 C -0.35 -19.63 9.67 84.35 0.82 -18.82 15 8 H 0.10 5.77 7.15 -2.91 -0.02 5.74 15 9 N -0.51 -28.38 5.25 -308.88 -1.62 -30.00 15 10 C 0.39 20.26 7.82 87.08 0.68 20.94 15 11 O -0.62 -33.89 16.03 -3.74 -0.06 -33.95 15 12 C 0.52 23.03 7.87 87.08 0.69 23.72 15 13 O -0.57 -27.36 16.47 -3.51 -0.06 -27.42 15 14 N -0.69 -23.67 5.55 -465.00 -2.58 -26.25 15 15 C 0.15 3.99 5.95 86.38 0.51 4.50 15 16 C -0.18 -3.54 5.85 -10.80 -0.06 -3.60 15 17 C -0.18 -2.84 10.18 30.59 0.31 -2.53 15 18 C -0.16 -2.33 10.25 30.59 0.31 -2.01 15 19 H 0.29 14.28 8.30 -92.72 -0.77 13.52 15 20 H 0.40 22.52 7.35 -92.70 -0.68 21.84 15 21 H 0.42 13.30 7.86 -92.71 -0.73 12.57 15 22 H 0.07 1.89 8.14 -2.38 -0.02 1.87 15 23 H 0.07 1.82 7.88 -2.38 -0.02 1.81 15 24 H 0.12 2.17 8.04 -2.39 -0.02 2.16 15 25 H 0.09 1.59 8.03 -2.39 -0.02 1.57 15 26 H 0.11 1.48 8.14 -2.39 -0.02 1.46 15 27 H 0.11 1.32 8.14 -2.39 -0.02 1.30 15 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 15 Total: -1.00 -65.55 257.47 1.51 -64.05 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: -0.21 Total: 36.47 kcal Atomic # 6 Polarization: 18.66 SS G_CDS: 3.73 Total: 22.39 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -3.92 Total: -104.43 kcal Atomic # 8 Polarization: -61.25 SS G_CDS: -0.12 Total: -61.37 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -65.55 1.51 -64.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037242554.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.454 kcal (2) G-P(sol) polarization free energy of solvation -65.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds