Wall clock time and date at job start Sun Mar 29 2020 21:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47452 * 59.99878 * 5 4 2 7 7 C 1.53006 * 109.46542 * 300.00026 * 6 5 4 8 8 H 1.09001 * 109.47369 * 299.99416 * 7 6 5 9 9 N 1.46907 * 109.46536 * 180.02562 * 7 6 5 10 10 C 1.46903 * 111.00014 * 85.00068 * 9 7 6 11 11 C 1.52993 * 109.46773 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46959 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00327 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99961 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99681 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00123 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.46943 * 89.99969 * 16 14 12 18 18 H 1.48498 * 109.47113 * 210.00266 * 16 14 12 19 19 H 1.48501 * 109.47186 * 330.00099 * 16 14 12 20 20 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 25 25 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 26 26 H 1.09001 * 109.47289 * 299.99953 * 5 4 2 27 27 H 1.09002 * 109.47153 * 179.97438 * 5 4 2 28 28 H 1.09000 * 109.47360 * 180.02562 * 6 5 4 29 29 H 1.08998 * 109.47061 * 59.99332 * 6 5 4 30 30 H 1.00901 * 110.99703 * 208.95396 * 9 7 6 31 31 H 1.08994 * 109.46838 * 299.99419 * 10 9 7 32 32 H 1.08994 * 109.46939 * 60.00043 * 10 9 7 33 33 H 1.09007 * 109.47359 * 299.99675 * 11 10 9 34 34 H 1.09001 * 109.47331 * 60.00060 * 11 10 9 35 35 H 0.97006 * 119.99689 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.47103 * 300.00247 * 20 2 1 37 37 H 1.09001 * 109.47066 * 60.00169 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5700 -0.7206 -1.2497 6 6 4.0806 -1.4416 -0.0005 7 6 3.5705 -0.7203 1.2488 8 1 3.9335 0.3075 1.2487 9 7 4.0613 -1.4122 2.4482 10 6 5.4085 -0.9501 2.8083 11 6 5.8842 -1.6911 4.0594 12 6 7.2665 -1.2176 4.4285 13 1 7.7564 -0.4633 3.8308 14 6 7.9056 -1.7474 5.5294 15 7 9.1117 -1.3338 5.8517 16 14 7.0580 -3.0517 6.5638 17 1 7.3906 -4.3979 6.0327 18 1 7.5214 -2.9461 7.9706 19 1 5.5880 -2.8477 6.5102 20 6 2.0400 -0.7212 1.2491 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.6767 -1.7489 -1.2494 25 1 1.6767 -0.2073 -2.1392 26 1 3.9330 0.3072 -1.2498 27 1 3.9333 -1.2348 -2.1395 28 1 5.1706 -1.4408 -0.0005 29 1 3.7176 -2.4693 -0.0002 30 1 3.4212 -1.2967 3.2196 31 1 6.0935 -1.1504 1.9845 32 1 5.3838 0.1210 3.0083 33 1 5.1990 -1.4905 4.8832 34 1 5.9088 -2.7624 3.8599 35 1 9.5612 -1.7063 6.6265 36 1 1.6767 -0.2074 2.1392 37 1 1.6768 -1.7489 1.2491 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037255627.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:11 Heat of formation + Delta-G solvation = -39.629253 kcal Electronic energy + Delta-G solvation = -14138.670834 eV Core-core repulsion = 11914.065366 eV Total energy + Delta-G solvation = -2224.605468 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.00340 -35.46919 -32.95532 -32.11325 -30.64106 -27.90665 -26.41174 -23.89023 -22.20564 -20.70224 -20.24105 -19.57370 -16.72203 -15.44885 -15.12953 -14.63200 -14.31553 -14.28823 -13.90680 -13.19662 -13.00214 -12.62917 -12.40143 -12.34722 -11.83615 -11.52363 -11.30330 -11.19437 -10.97236 -10.87854 -10.55009 -10.44967 -10.02733 -9.98860 -9.75099 -9.57038 -9.19088 -8.51199 -7.87471 -6.02122 -4.00201 3.34828 3.41331 3.46539 4.44850 4.48543 4.66666 4.73250 5.00311 5.17658 5.27909 5.32635 5.40495 5.49175 5.50274 5.58588 5.66573 5.73997 5.78609 5.93888 5.98698 6.11005 6.15151 6.26128 6.27920 6.29316 6.37585 6.41053 6.57981 6.83823 7.20076 7.42820 7.67245 7.81226 7.97507 8.56109 9.02156 9.60498 11.11314 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.056723 B = 0.005615 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.508882 B = 4985.852937 C = 5226.954243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.067 0.933 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.107 4.107 7 C 0.087 3.913 8 H 0.038 0.962 9 N -0.693 5.693 10 C 0.074 3.926 11 C -0.010 4.010 12 C -0.521 4.521 13 H 0.070 0.930 14 C 0.067 3.933 15 N -0.905 5.905 16 Si 0.883 3.117 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.265 1.265 20 C -0.114 4.114 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.334 0.666 31 H 0.063 0.937 32 H 0.020 0.980 33 H 0.012 0.988 34 H 0.020 0.980 35 H 0.263 0.737 36 H 0.058 0.942 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.067 1.452 -12.224 20.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.086 0.914 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.145 4.145 7 C -0.023 4.023 8 H 0.056 0.944 9 N -0.323 5.323 10 C -0.054 4.054 11 C -0.048 4.048 12 C -0.559 4.559 13 H 0.088 0.912 14 C -0.134 4.134 15 N -0.544 5.544 16 Si 0.710 3.290 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.190 1.190 20 C -0.152 4.152 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.152 0.848 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.031 0.969 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.685 0.883 -12.433 20.034 hybrid contribution -0.407 0.239 1.021 1.125 sum -16.092 1.122 -11.412 19.760 Atomic orbital electron populations 1.21825 0.95424 1.01716 1.01386 1.21104 0.95166 0.99587 0.95079 0.91440 1.21593 0.95810 1.00555 0.97056 1.21549 0.95351 1.00744 0.98136 1.21520 1.00681 0.99572 0.92736 1.21497 0.93522 0.95555 0.91747 0.94406 1.60622 1.04936 1.60161 1.06600 1.21980 0.87752 0.96430 0.99232 1.19549 0.96598 0.96250 0.92401 1.21088 0.99191 1.23601 1.12036 0.91162 1.25011 0.94667 0.96548 0.97217 1.69922 1.13270 1.43672 1.27525 0.86725 0.80533 0.82328 0.79365 1.20240 1.21519 1.19011 1.21778 0.95156 1.01099 0.97183 0.92814 0.92718 0.92917 0.91987 0.92431 0.92289 0.92099 0.91904 0.91536 0.84812 0.91820 0.96161 0.96925 0.96133 0.92757 0.92346 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.19 37.16 0.34 -0.92 16 2 C -0.09 -0.91 2.72 -90.62 -0.25 -1.16 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.11 -1.10 5.20 -26.73 -0.14 -1.24 16 5 C -0.12 -1.32 5.92 -26.73 -0.16 -1.47 16 6 C -0.11 -1.46 5.43 -26.73 -0.15 -1.60 16 7 C 0.09 1.25 2.50 -67.68 -0.17 1.08 16 8 H 0.04 0.58 7.80 -51.93 -0.40 0.17 16 9 N -0.69 -12.03 6.31 -106.70 -0.67 -12.71 16 10 C 0.07 1.55 5.42 -3.83 -0.02 1.53 16 11 C -0.01 -0.25 4.30 -27.89 -0.12 -0.37 16 12 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 13 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -28.37 13.96 55.43 0.77 -27.59 16 16 Si 0.88 22.25 27.47 -169.99 -4.67 17.59 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 20 C -0.11 -1.35 4.48 -26.71 -0.12 -1.47 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.95 7.45 -51.93 -0.39 0.56 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.33 5.51 8.35 -39.29 -0.33 5.18 16 31 H 0.06 1.36 7.43 -51.93 -0.39 0.97 16 32 H 0.02 0.43 8.05 -51.93 -0.42 0.01 16 33 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 34 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 288.48 15.07 4.35 4.35 Total: -1.00 -30.37 288.48 -8.35 -38.72 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.93 Total: -1.06 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -1.21 Total: -19.30 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.10 Total: -40.30 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.37 -8.35 -38.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037255627.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.907 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds