Wall clock time and date at job start Sun Mar 29 2020 21:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47452 * 59.99878 * 5 4 2 7 7 C 1.53006 * 109.46542 * 300.00026 * 6 5 4 8 8 H 1.09001 * 109.47369 * 299.99416 * 7 6 5 9 9 N 1.46907 * 109.46536 * 180.02562 * 7 6 5 10 10 C 1.46903 * 111.00014 * 85.00068 * 9 7 6 11 11 C 1.52993 * 109.46773 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46959 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00327 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99961 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99681 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00123 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.46943 * 89.99969 * 16 14 12 18 18 H 1.48498 * 109.47113 * 210.00266 * 16 14 12 19 19 H 1.48501 * 109.47186 * 330.00099 * 16 14 12 20 20 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 25 25 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 26 26 H 1.09001 * 109.47289 * 299.99953 * 5 4 2 27 27 H 1.09002 * 109.47153 * 179.97438 * 5 4 2 28 28 H 1.09000 * 109.47360 * 180.02562 * 6 5 4 29 29 H 1.08998 * 109.47061 * 59.99332 * 6 5 4 30 30 H 1.00901 * 110.99703 * 208.95396 * 9 7 6 31 31 H 1.08994 * 109.46838 * 299.99419 * 10 9 7 32 32 H 1.08994 * 109.46939 * 60.00043 * 10 9 7 33 33 H 1.09007 * 109.47359 * 299.99675 * 11 10 9 34 34 H 1.09001 * 109.47331 * 60.00060 * 11 10 9 35 35 H 0.97006 * 119.99689 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.47103 * 300.00247 * 20 2 1 37 37 H 1.09001 * 109.47066 * 60.00169 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5700 -0.7206 -1.2497 6 6 4.0806 -1.4416 -0.0005 7 6 3.5705 -0.7203 1.2488 8 1 3.9335 0.3075 1.2487 9 7 4.0613 -1.4122 2.4482 10 6 5.4085 -0.9501 2.8083 11 6 5.8842 -1.6911 4.0594 12 6 7.2665 -1.2176 4.4285 13 1 7.7564 -0.4633 3.8308 14 6 7.9056 -1.7474 5.5294 15 7 9.1117 -1.3338 5.8517 16 14 7.0580 -3.0517 6.5638 17 1 7.3906 -4.3979 6.0327 18 1 7.5214 -2.9461 7.9706 19 1 5.5880 -2.8477 6.5102 20 6 2.0400 -0.7212 1.2491 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.6767 -1.7489 -1.2494 25 1 1.6767 -0.2073 -2.1392 26 1 3.9330 0.3072 -1.2498 27 1 3.9333 -1.2348 -2.1395 28 1 5.1706 -1.4408 -0.0005 29 1 3.7176 -2.4693 -0.0002 30 1 3.4212 -1.2967 3.2196 31 1 6.0935 -1.1504 1.9845 32 1 5.3838 0.1210 3.0083 33 1 5.1990 -1.4905 4.8832 34 1 5.9088 -2.7624 3.8599 35 1 9.5612 -1.7063 6.6265 36 1 1.6767 -0.2074 2.1392 37 1 1.6768 -1.7489 1.2491 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037255627.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:11 Heat of formation + Delta-G solvation = -58.709023 kcal Electronic energy + Delta-G solvation = -14139.498195 eV Core-core repulsion = 11914.065366 eV Total energy + Delta-G solvation = -2225.432829 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.03209 -36.92238 -34.93343 -33.17592 -32.26893 -29.41147 -27.24049 -25.75648 -23.18261 -22.32801 -21.51547 -20.57306 -18.94972 -16.81271 -16.33090 -16.12207 -15.79025 -15.27892 -15.17997 -14.79650 -14.59742 -14.01944 -13.59387 -13.23756 -13.19779 -13.02809 -12.68964 -12.40338 -12.21750 -11.92787 -11.89806 -11.79413 -11.66086 -11.43717 -11.34499 -10.99438 -10.91050 -10.78259 -9.32787 -8.31430 -6.36399 1.36836 1.38075 1.50978 2.35928 3.04091 3.21513 3.78692 3.81331 4.08551 4.26023 4.28088 4.40956 4.46214 4.51279 4.58783 4.63232 4.70289 4.80274 4.90533 4.93539 5.03095 5.08276 5.14779 5.19453 5.28196 5.36564 5.38509 5.40918 5.44730 5.48210 5.61737 5.62142 6.17862 6.25032 6.55754 6.72442 7.28635 8.85425 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.056723 B = 0.005615 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.508882 B = 4985.852937 C = 5226.954243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 H 0.064 0.936 4 C -0.109 4.109 5 C -0.116 4.116 6 C -0.106 4.106 7 C 0.085 3.915 8 H 0.028 0.972 9 N -0.691 5.691 10 C 0.089 3.911 11 C -0.003 4.003 12 C -0.536 4.536 13 H 0.030 0.970 14 C 0.006 3.994 15 N -0.951 5.951 16 Si 0.956 3.044 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.247 1.247 20 C -0.107 4.107 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.342 0.658 31 H 0.052 0.948 32 H 0.012 0.988 33 H 0.020 0.980 34 H 0.021 0.979 35 H 0.267 0.733 36 H 0.061 0.939 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.603 0.594 -12.590 22.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 H 0.083 0.917 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.144 4.144 7 C -0.025 4.025 8 H 0.046 0.954 9 N -0.323 5.323 10 C -0.040 4.040 11 C -0.041 4.041 12 C -0.575 4.575 13 H 0.048 0.952 14 C -0.191 4.191 15 N -0.591 5.591 16 Si 0.779 3.221 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.170 1.170 20 C -0.145 4.145 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.160 0.840 31 H 0.070 0.930 32 H 0.031 0.969 33 H 0.038 0.962 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.241 0.034 -12.819 22.295 hybrid contribution 0.448 0.572 1.078 1.300 sum -17.794 0.606 -11.741 21.327 Atomic orbital electron populations 1.21788 0.93926 1.02167 1.02096 1.21099 0.96357 0.99114 0.94205 0.91737 1.21584 0.94496 1.00979 0.97610 1.21525 0.96520 1.00319 0.97020 1.21509 0.99324 0.99797 0.93808 1.21613 0.95551 0.94709 0.90622 0.95389 1.60557 1.03443 1.60444 1.07818 1.21633 0.89699 0.95463 0.97238 1.19433 0.94137 0.96372 0.94180 1.21413 1.01343 1.22900 1.11834 0.95210 1.26018 0.95309 0.99122 0.98663 1.70070 1.15140 1.45448 1.28488 0.85568 0.80162 0.78982 0.77351 1.19229 1.20772 1.17038 1.21728 0.92734 1.01565 0.98500 0.92662 0.92386 0.91733 0.91671 0.90686 0.92461 0.91011 0.94141 0.91762 0.84012 0.92987 0.96942 0.96152 0.96051 0.92372 0.91995 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.19 71.98 0.66 -1.37 16 2 C -0.09 -1.58 2.72 -10.79 -0.03 -1.60 16 3 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.11 -1.85 5.20 30.60 0.16 -1.69 16 5 C -0.12 -2.36 5.92 30.60 0.18 -2.18 16 6 C -0.11 -2.82 5.43 30.60 0.17 -2.66 16 7 C 0.08 2.36 2.50 44.93 0.11 2.47 16 8 H 0.03 0.85 7.80 -2.39 -0.02 0.83 16 9 N -0.69 -23.40 6.31 -491.48 -3.10 -26.50 16 10 C 0.09 3.73 5.42 86.30 0.47 4.20 16 11 C 0.00 -0.17 4.30 29.85 0.13 -0.04 16 12 C -0.54 -32.08 9.66 25.60 0.25 -31.83 16 13 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 14 C 0.01 0.35 5.47 84.66 0.46 0.81 16 15 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 16 Si 0.96 45.40 27.47 68.60 1.88 47.29 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 20 C -0.11 -2.33 4.48 30.61 0.14 -2.20 16 21 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 22 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 24 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.04 1.23 7.45 -2.39 -0.02 1.21 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.34 10.71 8.35 -89.69 -0.75 9.96 16 31 H 0.05 2.29 7.43 -2.39 -0.02 2.27 16 32 H 0.01 0.53 8.05 -2.39 -0.02 0.52 16 33 H 0.02 0.96 7.20 -2.38 -0.02 0.94 16 34 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 35 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 36 H 0.06 1.30 8.12 -2.39 -0.02 1.29 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -65.56 288.48 1.98 -63.59 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.20 Total: 12.24 kcal Atomic # 6 Polarization: -38.77 SS G_CDS: 2.69 Total: -36.08 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -2.80 Total: -87.04 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.29 kcal Total: -65.56 1.98 -63.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037255627.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.877 kcal (2) G-P(sol) polarization free energy of solvation -65.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds