Wall clock time and date at job start Sun Mar 29 2020 21:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.52996 * 109.47473 * 120.00038 * 2 1 3 5 5 C 1.53000 * 109.47328 * 60.00001 * 4 2 1 6 6 C 1.52997 * 109.47060 * 60.00126 * 5 4 2 7 7 C 1.53006 * 109.47127 * 300.00449 * 6 5 4 8 8 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 9 9 N 1.46898 * 109.47006 * 179.97438 * 7 6 5 10 10 C 1.46906 * 110.99961 * 84.99970 * 9 7 6 11 11 C 1.52998 * 109.46913 * 179.97438 * 10 9 7 12 12 C 1.50707 * 109.47089 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99665 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00423 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99547 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00267 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47114 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47364 * 120.00158 * 16 14 12 19 19 H 1.48506 * 109.47141 * 239.99792 * 16 14 12 20 20 C 1.52997 * 109.47164 * 59.99836 * 7 6 5 21 21 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 22 22 H 1.09002 * 109.47722 * 60.00050 * 1 2 3 23 23 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47368 * 300.00213 * 4 2 1 25 25 H 1.09001 * 109.47372 * 180.02562 * 4 2 1 26 26 H 1.09002 * 109.47398 * 180.02562 * 5 4 2 27 27 H 1.09001 * 109.47194 * 300.00476 * 5 4 2 28 28 H 1.08998 * 109.47533 * 59.99948 * 6 5 4 29 29 H 1.08996 * 109.47853 * 180.02562 * 6 5 4 30 30 H 1.00893 * 111.00338 * 321.04590 * 9 7 6 31 31 H 1.08996 * 109.46971 * 299.99790 * 10 9 7 32 32 H 1.08994 * 109.47376 * 59.99710 * 10 9 7 33 33 H 1.09005 * 109.47167 * 299.99475 * 11 10 9 34 34 H 1.08996 * 109.47723 * 60.00027 * 11 10 9 35 35 H 0.97003 * 119.99545 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.47045 * 180.02562 * 20 7 6 37 37 H 1.09001 * 109.47375 * 59.99966 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5301 -2.1637 1.2492 6 6 2.0401 -2.8850 0.0000 7 6 1.5300 -2.1637 -1.2493 8 1 0.4400 -2.1638 -1.2493 9 7 2.0202 -2.8558 -2.4487 10 6 1.1370 -3.9728 -2.8099 11 6 1.6785 -4.6671 -4.0610 12 6 0.7728 -5.8134 -4.4312 13 1 -0.1014 -6.0256 -3.8335 14 6 1.0601 -6.5911 -5.5328 15 7 2.1244 -6.3323 -6.2609 16 14 -0.0630 -8.0114 -5.9920 17 1 -1.1831 -8.0908 -5.0204 18 1 -0.6055 -7.7922 -7.3569 19 1 0.7073 -9.2807 -5.9636 20 6 2.0400 -0.7212 -1.2493 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6767 -0.2074 2.1392 25 1 3.1300 -0.7208 1.2494 26 1 1.8931 -2.6775 2.1394 27 1 0.4401 -2.1638 1.2492 28 1 3.1300 -2.8850 -0.0001 29 1 1.6765 -3.9125 -0.0003 30 1 2.9696 -3.1724 -2.3209 31 1 1.0977 -4.6858 -1.9864 32 1 0.1350 -3.5936 -3.0101 33 1 1.7174 -3.9538 -4.8844 34 1 2.6806 -5.0464 -3.8612 35 1 2.3267 -6.8797 -7.0357 36 1 1.6763 -0.2073 -2.1390 37 1 3.1300 -0.7212 -1.2492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037255629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:13 Heat of formation + Delta-G solvation = -39.109028 kcal Electronic energy + Delta-G solvation = -14261.234874 eV Core-core repulsion = 12036.651965 eV Total energy + Delta-G solvation = -2224.582909 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.25057 -35.34152 -32.93197 -31.53471 -30.29837 -27.46922 -26.71263 -23.93550 -22.19795 -21.31138 -20.59176 -18.47864 -16.38422 -15.85135 -14.82562 -14.48106 -14.38860 -14.08341 -13.80481 -13.12618 -12.83307 -12.69380 -12.40647 -12.00821 -11.64174 -11.56883 -11.09797 -10.98018 -10.93136 -10.85676 -10.57725 -10.37066 -10.21471 -9.94789 -9.88490 -9.28041 -9.08171 -8.33229 -7.68498 -5.97563 -3.99914 3.32484 3.39715 3.43902 4.44702 4.62981 4.73559 4.82326 5.12964 5.22445 5.28752 5.38218 5.38456 5.46453 5.64980 5.69911 5.71464 5.84030 5.93189 5.99885 6.03688 6.20514 6.22471 6.24501 6.31436 6.42893 6.45184 6.56501 6.62199 7.03050 7.57161 7.78055 7.88071 8.03460 8.13193 8.47077 9.07758 9.63808 11.13985 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.060106 B = 0.005420 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.734465 B = 5164.895380 C = 5226.598460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.149 4.149 7 C 0.085 3.915 8 H 0.075 0.925 9 N -0.688 5.688 10 C 0.067 3.933 11 C 0.024 3.976 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.101 4.101 21 H 0.048 0.952 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.335 0.665 31 H 0.014 0.986 32 H 0.056 0.944 33 H 0.025 0.975 34 H 0.013 0.987 35 H 0.260 0.740 36 H 0.067 0.933 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.695 10.746 13.890 17.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 H 0.084 0.916 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.188 4.188 7 C -0.025 4.025 8 H 0.093 0.907 9 N -0.317 5.317 10 C -0.061 4.061 11 C -0.013 4.013 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.139 4.139 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.152 0.848 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.910 11.117 13.272 17.337 hybrid contribution -0.300 -1.541 0.375 1.614 sum -1.211 9.576 13.647 16.715 Atomic orbital electron populations 1.21940 0.95513 1.02186 1.01168 1.21107 0.95884 0.98858 0.95171 0.91568 1.21562 1.00408 0.95733 0.97382 1.21509 1.00901 0.95479 0.97569 1.22293 1.00873 0.99720 0.95949 1.21607 0.99525 0.93465 0.87901 0.90729 1.60690 1.06148 1.30754 1.34142 1.22156 0.95837 0.89672 0.98473 1.19079 0.96033 0.94581 0.91635 1.21227 1.09938 1.13552 1.11162 0.92760 1.25005 0.95339 0.97706 0.96348 1.69992 1.26168 1.39632 1.17517 0.86540 0.80805 0.82312 0.78358 1.19786 1.20968 1.21044 1.21529 1.00359 0.95156 0.96878 0.93260 0.92723 0.92017 0.92470 0.92196 0.92575 0.91821 0.92116 0.92076 0.84774 0.96755 0.92566 0.95693 0.96878 0.93078 0.91428 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.50 37.15 0.32 -1.26 16 2 C -0.09 -0.97 3.19 -90.62 -0.29 -1.26 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.11 -1.14 5.45 -26.73 -0.15 -1.29 16 5 C -0.12 -1.29 5.65 -26.73 -0.15 -1.44 16 6 C -0.15 -1.98 5.17 -26.73 -0.14 -2.12 16 7 C 0.09 1.27 2.19 -67.71 -0.15 1.12 16 8 H 0.07 1.16 6.09 -51.93 -0.32 0.84 16 9 N -0.69 -12.61 6.25 -106.73 -0.67 -13.28 16 10 C 0.07 1.44 5.42 -3.82 -0.02 1.42 16 11 C 0.02 0.64 5.23 -27.88 -0.15 0.50 16 12 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 13 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 16 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 C -0.10 -1.31 5.06 -26.73 -0.14 -1.44 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.69 4.81 -51.93 -0.25 0.44 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 28 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 29 H 0.06 0.89 7.45 -51.93 -0.39 0.50 16 30 H 0.33 5.99 8.47 -39.30 -0.33 5.66 16 31 H 0.01 0.30 7.43 -51.93 -0.39 -0.08 16 32 H 0.06 1.23 8.06 -51.93 -0.42 0.81 16 33 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 285.17 15.07 4.30 4.30 Total: -1.00 -29.78 285.17 -8.54 -38.32 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -6.61 Total: -0.11 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -1.27 Total: -19.55 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.07 Total: -39.87 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.78 -8.54 -38.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037255629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.788 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds