Wall clock time and date at job start Sun Mar 29 2020 21:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.52996 * 109.47473 * 120.00038 * 2 1 3 5 5 C 1.53000 * 109.47328 * 60.00001 * 4 2 1 6 6 C 1.52997 * 109.47060 * 60.00126 * 5 4 2 7 7 C 1.53006 * 109.47127 * 300.00449 * 6 5 4 8 8 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 9 9 N 1.46898 * 109.47006 * 179.97438 * 7 6 5 10 10 C 1.46906 * 110.99961 * 84.99970 * 9 7 6 11 11 C 1.52998 * 109.46913 * 179.97438 * 10 9 7 12 12 C 1.50707 * 109.47089 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99665 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00423 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99547 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00267 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47114 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47364 * 120.00158 * 16 14 12 19 19 H 1.48506 * 109.47141 * 239.99792 * 16 14 12 20 20 C 1.52997 * 109.47164 * 59.99836 * 7 6 5 21 21 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 22 22 H 1.09002 * 109.47722 * 60.00050 * 1 2 3 23 23 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47368 * 300.00213 * 4 2 1 25 25 H 1.09001 * 109.47372 * 180.02562 * 4 2 1 26 26 H 1.09002 * 109.47398 * 180.02562 * 5 4 2 27 27 H 1.09001 * 109.47194 * 300.00476 * 5 4 2 28 28 H 1.08998 * 109.47533 * 59.99948 * 6 5 4 29 29 H 1.08996 * 109.47853 * 180.02562 * 6 5 4 30 30 H 1.00893 * 111.00338 * 321.04590 * 9 7 6 31 31 H 1.08996 * 109.46971 * 299.99790 * 10 9 7 32 32 H 1.08994 * 109.47376 * 59.99710 * 10 9 7 33 33 H 1.09005 * 109.47167 * 299.99475 * 11 10 9 34 34 H 1.08996 * 109.47723 * 60.00027 * 11 10 9 35 35 H 0.97003 * 119.99545 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.47045 * 180.02562 * 20 7 6 37 37 H 1.09001 * 109.47375 * 59.99966 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5301 -2.1637 1.2492 6 6 2.0401 -2.8850 0.0000 7 6 1.5300 -2.1637 -1.2493 8 1 0.4400 -2.1638 -1.2493 9 7 2.0202 -2.8558 -2.4487 10 6 1.1370 -3.9728 -2.8099 11 6 1.6785 -4.6671 -4.0610 12 6 0.7728 -5.8134 -4.4312 13 1 -0.1014 -6.0256 -3.8335 14 6 1.0601 -6.5911 -5.5328 15 7 2.1244 -6.3323 -6.2609 16 14 -0.0630 -8.0114 -5.9920 17 1 -1.1831 -8.0908 -5.0204 18 1 -0.6055 -7.7922 -7.3569 19 1 0.7073 -9.2807 -5.9636 20 6 2.0400 -0.7212 -1.2493 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6767 -0.2074 2.1392 25 1 3.1300 -0.7208 1.2494 26 1 1.8931 -2.6775 2.1394 27 1 0.4401 -2.1638 1.2492 28 1 3.1300 -2.8850 -0.0001 29 1 1.6765 -3.9125 -0.0003 30 1 2.9696 -3.1724 -2.3209 31 1 1.0977 -4.6858 -1.9864 32 1 0.1350 -3.5936 -3.0101 33 1 1.7174 -3.9538 -4.8844 34 1 2.6806 -5.0464 -3.8612 35 1 2.3267 -6.8797 -7.0357 36 1 1.6763 -0.2073 -2.1390 37 1 3.1300 -0.7212 -1.2492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037255629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:12 Heat of formation + Delta-G solvation = -57.217501 kcal Electronic energy + Delta-G solvation = -14262.020117 eV Core-core repulsion = 12036.651965 eV Total energy + Delta-G solvation = -2225.368152 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.31144 -36.88895 -34.94856 -32.58881 -31.91180 -29.08598 -27.59362 -25.89753 -23.15630 -22.57871 -22.42810 -19.46355 -18.53937 -17.10207 -16.45160 -16.12671 -15.66198 -15.28713 -14.79436 -14.56194 -14.38362 -13.93588 -13.84755 -13.32295 -13.11174 -12.92003 -12.65848 -12.54189 -12.40780 -12.01312 -11.90318 -11.83526 -11.55058 -11.37984 -11.17594 -11.06791 -10.76737 -10.57938 -9.18214 -8.21498 -6.33305 1.39537 1.40228 1.53652 2.39797 3.11859 3.33554 3.76719 3.87995 4.09277 4.23978 4.31108 4.43506 4.46003 4.53630 4.59956 4.63783 4.74656 4.84899 4.93965 5.02540 5.07011 5.12334 5.13341 5.21111 5.27489 5.34980 5.43836 5.46444 5.51049 5.63631 5.67493 5.79070 6.15628 6.32308 6.57974 6.84115 7.36194 8.91036 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.060106 B = 0.005420 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.734465 B = 5164.895380 C = 5226.598460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 H 0.081 0.919 4 C -0.110 4.110 5 C -0.113 4.113 6 C -0.145 4.145 7 C 0.085 3.915 8 H 0.068 0.932 9 N -0.696 5.696 10 C 0.087 3.913 11 C 0.031 3.969 12 C -0.545 4.545 13 H 0.059 0.941 14 C 0.000 4.000 15 N -0.932 5.932 16 Si 0.968 3.032 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.276 1.276 20 C -0.097 4.097 21 H 0.066 0.934 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.336 0.664 31 H 0.017 0.983 32 H 0.053 0.947 33 H -0.007 1.007 34 H -0.009 1.009 35 H 0.264 0.736 36 H 0.054 0.946 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.487 10.982 15.353 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 H 0.099 0.901 4 C -0.147 4.147 5 C -0.151 4.151 6 C -0.184 4.184 7 C -0.024 4.024 8 H 0.086 0.914 9 N -0.325 5.325 10 C -0.042 4.042 11 C -0.006 4.006 12 C -0.583 4.583 13 H 0.077 0.923 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.793 3.207 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.135 4.135 21 H 0.085 0.915 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.154 0.846 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.012 0.988 34 H 0.009 0.991 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.703 11.371 14.757 18.707 hybrid contribution -0.015 -1.571 -0.090 1.573 sum -1.719 9.800 14.667 17.723 Atomic orbital electron populations 1.21936 0.95308 1.01690 1.01855 1.21099 0.96015 0.99358 0.94124 0.90070 1.21557 1.00638 0.94876 0.97676 1.21497 1.00964 0.96099 0.96553 1.22217 1.00942 0.98871 0.96376 1.21691 0.99177 0.94424 0.87139 0.91422 1.60632 1.05787 1.29346 1.36737 1.21749 0.95827 0.90398 0.96212 1.18932 0.94950 0.93880 0.92858 1.21638 1.10483 1.14443 1.11743 0.92258 1.25991 0.96923 1.00716 0.96115 1.70124 1.28003 1.41038 1.18072 0.85351 0.78759 0.78368 0.78260 1.18598 1.20245 1.20202 1.21490 1.00371 0.93749 0.97894 0.91502 0.93169 0.93083 0.90525 0.91856 0.91342 0.91735 0.91889 0.93701 0.84599 0.96491 0.92865 0.98849 0.99110 0.92702 0.92673 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.50 71.98 0.61 -2.22 16 2 C -0.09 -1.66 3.19 -10.80 -0.03 -1.69 16 3 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 4 C -0.11 -1.89 5.45 30.59 0.17 -1.72 16 5 C -0.11 -2.24 5.65 30.59 0.17 -2.07 16 6 C -0.14 -3.71 5.17 30.60 0.16 -3.55 16 7 C 0.09 2.49 2.19 44.92 0.10 2.59 16 8 H 0.07 2.08 6.09 -2.39 -0.01 2.07 16 9 N -0.70 -25.87 6.25 -491.57 -3.07 -28.95 16 10 C 0.09 3.84 5.42 86.30 0.47 4.31 16 11 C 0.03 1.73 5.23 29.85 0.16 1.88 16 12 C -0.54 -31.94 9.11 25.60 0.23 -31.71 16 13 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 14 C 0.00 0.02 5.46 84.65 0.46 0.49 16 15 N -0.93 -57.95 13.29 21.45 0.28 -57.66 16 16 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 C -0.10 -2.41 5.06 30.59 0.15 -2.25 16 21 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.05 1.07 4.81 -2.38 -0.01 1.05 16 24 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.28 6.43 -2.39 -0.02 1.27 16 28 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 29 H 0.04 1.28 7.45 -2.39 -0.02 1.27 16 30 H 0.34 12.27 8.47 -89.70 -0.76 11.51 16 31 H 0.02 0.73 7.43 -2.39 -0.02 0.72 16 32 H 0.05 2.36 8.06 -2.39 -0.02 2.34 16 33 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 34 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 35 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -63.98 285.17 2.15 -61.83 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.26 Total: 13.75 kcal Atomic # 6 Polarization: -38.60 SS G_CDS: 2.65 Total: -35.95 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -2.79 Total: -86.61 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -63.98 2.15 -61.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037255629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.613 kcal (2) G-P(sol) polarization free energy of solvation -63.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds