Wall clock time and date at job start Sun Mar 29 2020 21:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.53006 * 109.47164 * 119.99948 * 2 1 3 5 5 C 1.52997 * 109.47164 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47415 * 300.00027 * 5 4 2 7 7 C 1.52996 * 109.46972 * 59.99860 * 6 5 4 8 8 H 1.09000 * 109.47054 * 60.00300 * 7 6 5 9 9 N 1.46905 * 109.46987 * 180.02562 * 7 6 5 10 10 C 1.46900 * 111.00049 * 275.00298 * 9 7 6 11 11 C 1.52997 * 109.46997 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47045 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00274 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99871 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00167 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99803 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46882 * 60.00033 * 16 14 12 18 18 H 1.48501 * 109.46940 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47141 * 299.99780 * 16 14 12 20 20 C 1.52997 * 109.47165 * 300.00293 * 7 6 5 21 21 H 1.09001 * 109.47375 * 300.00017 * 1 2 3 22 22 H 1.09002 * 109.46777 * 60.00573 * 1 2 3 23 23 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46998 * 299.99705 * 4 2 1 25 25 H 1.09000 * 109.47050 * 59.99996 * 4 2 1 26 26 H 1.09000 * 109.47140 * 60.00051 * 5 4 2 27 27 H 1.09001 * 109.47230 * 179.97438 * 5 4 2 28 28 H 1.08992 * 109.46974 * 180.02562 * 6 5 4 29 29 H 1.08996 * 109.46550 * 300.00288 * 6 5 4 30 30 H 1.00902 * 110.99818 * 151.04622 * 9 7 6 31 31 H 1.08996 * 109.46700 * 299.99671 * 10 9 7 32 32 H 1.08995 * 109.46934 * 59.99613 * 10 9 7 33 33 H 1.09001 * 109.46897 * 299.99774 * 11 10 9 34 34 H 1.08999 * 109.47162 * 59.99486 * 11 10 9 35 35 H 0.97006 * 120.00347 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.47140 * 299.99954 * 20 7 6 37 37 H 1.09002 * 109.47045 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7218 1.2490 6 6 4.0795 -1.4434 -0.0003 7 6 3.5695 -0.7222 -1.2495 8 1 3.9332 0.3053 -1.2497 9 7 4.0583 -1.4155 -2.4489 10 6 5.4058 -0.9556 -2.8104 11 6 5.8794 -1.6980 -4.0615 12 6 7.2621 -1.2267 -4.4320 13 1 7.7537 -0.4728 -3.8351 14 6 7.8995 -1.7580 -5.5331 15 7 7.3012 -2.6764 -6.2597 16 14 9.6131 -1.1733 -5.9927 17 1 10.5469 -1.4468 -4.8708 18 1 10.0734 -1.8948 -7.2063 19 1 9.5815 0.2859 -6.2659 20 6 2.0396 -0.7217 -1.2491 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6767 -0.2074 2.1393 25 1 1.6767 -1.7489 1.2493 26 1 3.9337 0.3057 1.2487 27 1 3.9333 -1.2353 2.1392 28 1 5.1694 -1.4442 -0.0002 29 1 3.7158 -2.4709 0.0000 30 1 3.4177 -1.2995 -3.2198 31 1 5.3825 0.1155 -3.0109 32 1 6.0912 -1.1563 -1.9870 33 1 5.9026 -2.7692 -3.8614 34 1 5.1938 -1.4969 -4.8847 35 1 7.7498 -3.0505 -7.0342 36 1 1.6758 -1.7492 -1.2489 37 1 1.6762 -0.2082 -2.1394 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037255633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:16 Heat of formation + Delta-G solvation = -42.835728 kcal Electronic energy + Delta-G solvation = -14094.750558 eV Core-core repulsion = 11870.006047 eV Total energy + Delta-G solvation = -2224.744511 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.94026 -35.33986 -32.98524 -32.06475 -30.32769 -27.52150 -26.36253 -23.93563 -22.14675 -20.84096 -20.19015 -19.54674 -16.28639 -15.32911 -15.06242 -14.60838 -14.35164 -14.22245 -14.02528 -13.09043 -12.76751 -12.59637 -12.35423 -11.99515 -11.76383 -11.41007 -11.19508 -10.99318 -10.89806 -10.83881 -10.59676 -10.47258 -10.24666 -9.93274 -9.84271 -9.28416 -9.10473 -8.32251 -7.73889 -5.96836 -3.99396 3.35264 3.39389 3.41922 4.43504 4.58021 4.71394 4.78635 5.07753 5.22224 5.34412 5.38911 5.45754 5.53988 5.55939 5.63506 5.71665 5.80042 5.83325 5.98807 6.02825 6.16762 6.21948 6.33630 6.35240 6.40656 6.47278 6.48606 6.65618 7.04612 7.57138 7.77963 7.88075 8.03574 8.13637 8.47489 9.07792 9.64151 11.14603 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.063935 B = 0.005198 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.836268 B = 5385.571676 C = 5598.561093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.106 4.106 7 C 0.087 3.913 8 H 0.035 0.965 9 N -0.689 5.689 10 C 0.067 3.933 11 C 0.025 3.975 12 C -0.522 4.522 13 H 0.053 0.947 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.114 4.114 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.335 0.665 31 H 0.013 0.987 32 H 0.057 0.943 33 H 0.025 0.975 34 H 0.013 0.987 35 H 0.261 0.739 36 H 0.069 0.931 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.393 4.683 13.013 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.085 0.915 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.145 4.145 7 C -0.023 4.023 8 H 0.053 0.947 9 N -0.320 5.320 10 C -0.061 4.061 11 C -0.012 4.012 12 C -0.561 4.561 13 H 0.071 0.929 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.152 4.152 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.153 0.847 31 H 0.031 0.969 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.031 0.969 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.132 4.019 13.193 17.723 hybrid contribution 0.820 1.181 -0.738 1.616 sum -10.312 5.199 12.455 16.985 Atomic orbital electron populations 1.21825 0.95446 1.01735 1.01341 1.21105 0.95154 0.99536 0.95131 0.91511 1.21592 0.95801 1.00578 0.97034 1.21547 0.95380 1.00668 0.98158 1.21510 1.00593 0.99614 0.92742 1.21482 0.93491 0.95401 0.91966 0.94659 1.60606 1.04974 1.59946 1.06493 1.22178 0.87725 0.96255 0.99971 1.19065 0.95364 0.96259 0.90537 1.21152 1.01159 1.22507 1.11249 0.92864 1.24997 0.97902 0.95057 0.96363 1.69964 1.37876 1.27885 1.17586 0.86653 0.84680 0.78783 0.77838 1.20226 1.21261 1.20309 1.21770 0.95241 1.01114 0.97095 0.92965 0.92816 0.92692 0.92482 0.91966 0.92388 0.92165 0.92020 0.91515 0.84699 0.96869 0.92441 0.95688 0.96884 0.92958 0.91202 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.19 37.16 0.34 -0.98 16 2 C -0.09 -0.96 2.72 -90.62 -0.25 -1.20 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.11 -1.15 5.20 -26.73 -0.14 -1.29 16 5 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 6 C -0.11 -1.51 5.42 -26.73 -0.15 -1.66 16 7 C 0.09 1.31 2.49 -67.71 -0.17 1.14 16 8 H 0.04 0.56 7.80 -51.93 -0.41 0.16 16 9 N -0.69 -12.76 6.31 -106.73 -0.67 -13.43 16 10 C 0.07 1.46 5.42 -3.83 -0.02 1.44 16 11 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 12 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 16 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C -0.11 -1.43 4.47 -26.73 -0.12 -1.55 16 21 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.96 7.45 -51.93 -0.39 0.57 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.34 6.00 8.34 -39.29 -0.33 5.67 16 31 H 0.01 0.29 8.06 -51.93 -0.42 -0.13 16 32 H 0.06 1.27 7.44 -51.93 -0.39 0.88 16 33 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 LS Contribution 292.07 15.07 4.40 4.40 Total: -1.00 -29.90 292.07 -8.73 -38.63 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.96 Total: -0.98 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -1.21 Total: -18.94 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.06 Total: -40.05 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.90 -8.73 -38.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037255633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.207 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds