Wall clock time and date at job start Sun Mar 29 2020 21:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.53006 * 109.47164 * 119.99948 * 2 1 3 5 5 C 1.52997 * 109.47164 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47415 * 300.00027 * 5 4 2 7 7 C 1.52996 * 109.46972 * 59.99860 * 6 5 4 8 8 H 1.09000 * 109.47054 * 60.00300 * 7 6 5 9 9 N 1.46905 * 109.46987 * 180.02562 * 7 6 5 10 10 C 1.46900 * 111.00049 * 275.00298 * 9 7 6 11 11 C 1.52997 * 109.46997 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47045 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00274 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99871 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00167 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99803 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46882 * 60.00033 * 16 14 12 18 18 H 1.48501 * 109.46940 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47141 * 299.99780 * 16 14 12 20 20 C 1.52997 * 109.47165 * 300.00293 * 7 6 5 21 21 H 1.09001 * 109.47375 * 300.00017 * 1 2 3 22 22 H 1.09002 * 109.46777 * 60.00573 * 1 2 3 23 23 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46998 * 299.99705 * 4 2 1 25 25 H 1.09000 * 109.47050 * 59.99996 * 4 2 1 26 26 H 1.09000 * 109.47140 * 60.00051 * 5 4 2 27 27 H 1.09001 * 109.47230 * 179.97438 * 5 4 2 28 28 H 1.08992 * 109.46974 * 180.02562 * 6 5 4 29 29 H 1.08996 * 109.46550 * 300.00288 * 6 5 4 30 30 H 1.00902 * 110.99818 * 151.04622 * 9 7 6 31 31 H 1.08996 * 109.46700 * 299.99671 * 10 9 7 32 32 H 1.08995 * 109.46934 * 59.99613 * 10 9 7 33 33 H 1.09001 * 109.46897 * 299.99774 * 11 10 9 34 34 H 1.08999 * 109.47162 * 59.99486 * 11 10 9 35 35 H 0.97006 * 120.00347 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.47140 * 299.99954 * 20 7 6 37 37 H 1.09002 * 109.47045 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7218 1.2490 6 6 4.0795 -1.4434 -0.0003 7 6 3.5695 -0.7222 -1.2495 8 1 3.9332 0.3053 -1.2497 9 7 4.0583 -1.4155 -2.4489 10 6 5.4058 -0.9556 -2.8104 11 6 5.8794 -1.6980 -4.0615 12 6 7.2621 -1.2267 -4.4320 13 1 7.7537 -0.4728 -3.8351 14 6 7.8995 -1.7580 -5.5331 15 7 7.3012 -2.6764 -6.2597 16 14 9.6131 -1.1733 -5.9927 17 1 10.5469 -1.4468 -4.8708 18 1 10.0734 -1.8948 -7.2063 19 1 9.5815 0.2859 -6.2659 20 6 2.0396 -0.7217 -1.2491 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6767 -0.2074 2.1393 25 1 1.6767 -1.7489 1.2493 26 1 3.9337 0.3057 1.2487 27 1 3.9333 -1.2353 2.1392 28 1 5.1694 -1.4442 -0.0002 29 1 3.7158 -2.4709 0.0000 30 1 3.4177 -1.2995 -3.2198 31 1 5.3825 0.1155 -3.0109 32 1 6.0912 -1.1563 -1.9870 33 1 5.9026 -2.7692 -3.8614 34 1 5.1938 -1.4969 -4.8847 35 1 7.7498 -3.0505 -7.0342 36 1 1.6758 -1.7492 -1.2489 37 1 1.6762 -0.2082 -2.1394 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037255633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:15 Heat of formation + Delta-G solvation = -60.849236 kcal Electronic energy + Delta-G solvation = -14095.531682 eV Core-core repulsion = 11870.006047 eV Total energy + Delta-G solvation = -2225.525636 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.02472 -36.87564 -34.96858 -33.12205 -31.96821 -29.14966 -27.24016 -25.91080 -23.17244 -22.55012 -21.48555 -20.57693 -18.50546 -16.81445 -16.38860 -16.18158 -15.73085 -15.34576 -15.16843 -14.59047 -14.32334 -13.97637 -13.49141 -13.20284 -13.14630 -12.90814 -12.70223 -12.48876 -12.35851 -12.18441 -11.89968 -11.76609 -11.53953 -11.40327 -11.32907 -10.94154 -10.89604 -10.57080 -9.28370 -8.21173 -6.33316 1.39500 1.43169 1.51195 2.39948 3.11928 3.26601 3.78842 3.81607 4.09592 4.26844 4.28587 4.46660 4.46903 4.55143 4.59966 4.66006 4.70405 4.80475 4.90984 5.02741 5.03973 5.09811 5.17831 5.19662 5.34408 5.37402 5.41082 5.43905 5.45855 5.61058 5.66667 5.78493 6.15009 6.30595 6.56866 6.83493 7.36047 8.90886 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.063935 B = 0.005198 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.836268 B = 5385.571676 C = 5598.561093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.067 0.933 4 C -0.110 4.110 5 C -0.114 4.114 6 C -0.105 4.105 7 C 0.085 3.915 8 H 0.031 0.969 9 N -0.696 5.696 10 C 0.087 3.913 11 C 0.032 3.968 12 C -0.548 4.548 13 H 0.059 0.941 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.968 3.032 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.266 1.266 20 C -0.108 4.108 21 H 0.066 0.934 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.338 0.662 31 H 0.015 0.985 32 H 0.054 0.946 33 H -0.007 1.007 34 H -0.009 1.009 35 H 0.265 0.735 36 H 0.066 0.934 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.545 5.786 14.199 19.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.085 0.915 4 C -0.147 4.147 5 C -0.152 4.152 6 C -0.144 4.144 7 C -0.024 4.024 8 H 0.049 0.951 9 N -0.327 5.327 10 C -0.042 4.042 11 C -0.005 4.005 12 C -0.586 4.586 13 H 0.077 0.923 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.792 3.208 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.191 1.191 20 C -0.146 4.146 21 H 0.085 0.915 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.156 0.844 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.012 0.988 34 H 0.009 0.991 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.300 5.130 14.399 19.009 hybrid contribution 0.828 0.803 -1.108 1.599 sum -10.472 5.932 13.291 17.931 Atomic orbital electron populations 1.21791 0.93978 1.02102 1.02134 1.21097 0.96331 0.99165 0.94068 0.91480 1.21590 0.94621 1.00889 0.97611 1.21517 0.96420 1.00419 0.96870 1.21501 0.99395 0.99622 0.93862 1.21608 0.95452 0.94758 0.90610 0.95120 1.60552 1.03675 1.60663 1.07765 1.21778 0.89549 0.95450 0.97451 1.18917 0.94725 0.94837 0.92040 1.21579 1.02246 1.22956 1.11840 0.92272 1.25986 1.02613 0.94938 0.96110 1.70103 1.39933 1.29021 1.18094 0.85459 0.78871 0.78681 0.77773 1.19156 1.20623 1.19088 1.21726 0.92966 1.01375 0.98561 0.91531 0.92728 0.92549 0.90462 0.91899 0.92165 0.90922 0.93973 0.92210 0.84439 0.96717 0.92735 0.98820 0.99055 0.92672 0.91512 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.19 71.98 0.66 -1.55 16 2 C -0.09 -1.66 2.72 -10.79 -0.03 -1.69 16 3 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 4 C -0.11 -1.95 5.20 30.60 0.16 -1.79 16 5 C -0.11 -2.39 5.92 30.59 0.18 -2.20 16 6 C -0.11 -2.95 5.42 30.59 0.17 -2.78 16 7 C 0.09 2.54 2.49 44.91 0.11 2.65 16 8 H 0.03 0.96 7.80 -2.39 -0.02 0.94 16 9 N -0.70 -26.13 6.31 -491.58 -3.10 -29.23 16 10 C 0.09 3.86 5.42 86.30 0.47 4.33 16 11 C 0.03 1.79 5.23 29.85 0.16 1.95 16 12 C -0.55 -32.22 9.11 25.60 0.23 -31.99 16 13 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 14 C 0.00 0.09 5.46 84.65 0.46 0.56 16 15 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 16 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 20 C -0.11 -2.59 4.47 30.59 0.14 -2.46 16 21 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.04 1.32 7.45 -2.39 -0.02 1.30 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.34 12.30 8.34 -89.69 -0.75 11.55 16 31 H 0.01 0.65 8.06 -2.39 -0.02 0.63 16 32 H 0.05 2.45 7.44 -2.39 -0.02 2.43 16 33 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 34 H -0.01 -0.53 8.14 -2.39 -0.02 -0.54 16 35 H 0.26 15.41 8.31 -92.70 -0.77 14.63 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.41 8.12 -2.39 -0.02 1.39 16 Total: -1.00 -64.24 292.07 2.17 -62.07 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.25 Total: 12.82 kcal Atomic # 6 Polarization: -37.68 SS G_CDS: 2.71 Total: -34.97 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -2.82 Total: -86.89 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.24 2.17 -62.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037255633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.221 kcal (2) G-P(sol) polarization free energy of solvation -64.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds