Wall clock time and date at job start Sun Mar 29 2020 21:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86789 * 120.00248 * 2 1 4 4 H 1.48506 * 109.47300 * 269.99515 * 3 2 1 5 5 H 1.48501 * 109.47161 * 29.99913 * 3 2 1 6 6 H 1.48507 * 109.47144 * 149.99954 * 3 2 1 7 7 C 1.40049 * 119.99652 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00391 * 180.02562 * 7 2 1 9 9 C 1.46377 * 120.00358 * 359.97438 * 7 2 1 10 10 O 1.21695 * 119.99804 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00281 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99683 * 180.02562 * 11 9 7 13 13 C 1.50706 * 109.46585 * 179.97438 * 12 11 9 14 14 O 1.21275 * 120.00404 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99413 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99461 * 180.02562 * 15 13 12 17 17 C 1.53001 * 117.49681 * 223.62047 * 16 15 13 18 18 C 1.52999 * 59.99986 * 252.51359 * 17 16 15 19 19 H 0.97005 * 119.99556 * 0.02562 * 1 2 3 20 20 H 0.96999 * 120.00065 * 359.97438 * 11 9 7 21 21 H 1.08994 * 109.47435 * 60.00392 * 12 11 9 22 22 H 1.08994 * 109.47204 * 299.99995 * 12 11 9 23 23 H 0.96995 * 120.00725 * 0.02562 * 15 13 12 24 24 H 1.08998 * 115.55053 * 9.32545 * 16 15 13 25 25 H 1.09004 * 117.49834 * 359.97438 * 17 16 15 26 26 H 1.08997 * 117.49999 * 145.01929 * 17 16 15 27 27 H 1.08998 * 117.49443 * 252.51298 * 18 17 16 28 28 H 1.08998 * 117.52032 * 107.48340 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6176 0.0000 4 1 2.4884 2.0463 -1.4001 5 1 1.4382 2.6526 0.7000 6 1 3.5383 1.4400 0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2750 -2.4806 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9488 -3.6478 0.0027 12 6 1.2162 -4.9165 0.0033 13 6 2.1955 -6.0620 0.0038 14 8 3.3878 -5.8404 0.0042 15 7 1.7461 -7.3326 0.0038 16 6 2.6981 -8.4462 0.0049 17 6 2.4111 -9.6219 -0.9312 18 6 2.2217 -9.7822 0.5785 19 1 -0.4850 0.8401 -0.0004 20 1 2.9188 -3.6478 0.0023 21 1 0.5899 -4.9748 -0.8869 22 1 0.5892 -4.9736 0.8930 23 1 0.7925 -7.5099 0.0032 24 1 3.7411 -8.1729 0.1650 25 1 1.5137 -9.5670 -1.5476 26 1 3.2653 -10.1222 -1.3874 27 1 2.9515 -10.3881 1.1156 28 1 1.2003 -9.8326 0.9555 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037504579.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:21 Heat of formation + Delta-G solvation = -52.549997 kcal Electronic energy + Delta-G solvation = -13400.448185 eV Core-core repulsion = 10838.190332 eV Total energy + Delta-G solvation = -2562.257854 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.73043 -37.46177 -36.72126 -33.14240 -32.75732 -32.12704 -27.76698 -25.49679 -22.61236 -22.08282 -20.63835 -19.56221 -17.87481 -16.66448 -16.17877 -15.24938 -15.18650 -14.80051 -14.38179 -13.81227 -13.17290 -13.09594 -12.77050 -12.09366 -11.83180 -11.61933 -11.31579 -11.14359 -10.90372 -10.73034 -10.43605 -10.22254 -9.68610 -8.84919 -8.81661 -7.66116 -7.56286 -6.18577 -4.62619 2.70724 3.04350 3.16951 3.23637 3.28185 3.74136 4.13773 4.58190 4.58565 4.75083 4.78956 4.92331 5.00770 5.38526 5.59259 5.71241 5.78089 5.83716 6.00145 6.12653 6.45544 7.43483 7.46510 7.97144 8.04657 8.30676 8.35623 9.03817 9.53195 10.59205 10.77097 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.087929 B = 0.005416 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.361527 B = 5168.703253 C = 5403.435872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.070 0.930 9 C 0.556 3.444 10 O -0.584 6.584 11 N -0.757 5.757 12 C 0.116 3.884 13 C 0.515 3.485 14 O -0.535 6.535 15 N -0.707 5.707 16 C 0.083 3.917 17 C -0.196 4.196 18 C -0.192 4.192 19 H 0.268 0.732 20 H 0.393 0.607 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.403 0.597 24 H 0.137 0.863 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.141 -14.825 -0.059 15.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.133 4.133 3 Si 0.735 3.265 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.578 4.578 8 H 0.088 0.912 9 C 0.360 3.640 10 O -0.467 6.467 11 N -0.416 5.416 12 C -0.013 4.013 13 C 0.303 3.697 14 O -0.411 6.411 15 N -0.358 5.358 16 C -0.024 4.024 17 C -0.235 4.235 18 C -0.230 4.230 19 H 0.079 0.921 20 H 0.228 0.772 21 H 0.098 0.902 22 H 0.099 0.901 23 H 0.238 0.762 24 H 0.155 0.845 25 H 0.115 0.885 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.932 -14.517 -0.050 14.810 hybrid contribution 0.342 0.481 -0.029 0.591 sum 3.274 -14.036 -0.078 14.413 Atomic orbital electron populations 1.70026 1.07070 1.27296 1.35373 1.25718 0.94655 1.00343 0.92569 0.86331 0.80172 0.81167 0.78853 1.19717 1.20459 1.18832 1.20870 0.93773 0.89096 1.54055 0.91196 1.18249 0.87165 0.82190 0.76364 1.90593 1.14027 1.86813 1.55280 1.46017 1.09663 1.03178 1.82760 1.20649 0.93444 0.84126 1.03054 1.21160 0.90264 0.83886 0.74401 1.90648 1.17127 1.84422 1.48878 1.45388 1.09522 1.04906 1.76027 1.21572 0.95501 0.81739 1.03559 1.23425 1.04067 1.02878 0.93085 1.23372 1.03163 1.00032 0.96442 0.92101 0.77231 0.90177 0.90149 0.76212 0.84517 0.88466 0.88105 0.87997 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.21 11.83 55.55 0.66 -22.55 15 2 C 0.09 2.46 5.50 -17.37 -0.10 2.36 15 3 Si 0.91 20.49 29.56 -169.99 -5.02 15.46 15 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 6 H -0.26 -5.79 7.11 56.52 0.40 -5.38 15 7 C -0.54 -15.72 9.54 -35.63 -0.34 -16.06 15 8 H 0.07 1.89 7.85 -52.49 -0.41 1.48 15 9 C 0.56 16.20 7.75 -12.99 -0.10 16.10 15 10 O -0.58 -18.87 15.02 5.19 0.08 -18.80 15 11 N -0.76 -18.07 5.52 -62.90 -0.35 -18.42 15 12 C 0.12 2.22 6.15 -5.19 -0.03 2.19 15 13 C 0.52 8.62 7.90 -10.98 -0.09 8.53 15 14 O -0.54 -10.62 15.23 5.56 0.08 -10.54 15 15 N -0.71 -8.72 5.57 -53.80 -0.30 -9.02 15 16 C 0.08 0.91 6.43 -67.93 -0.44 0.47 15 17 C -0.20 -1.67 10.46 -26.73 -0.28 -1.95 15 18 C -0.19 -1.55 10.45 -26.73 -0.28 -1.83 15 19 H 0.27 7.32 8.29 -40.82 -0.34 6.98 15 20 H 0.39 9.06 7.42 -40.82 -0.30 8.76 15 21 H 0.08 1.50 8.14 -51.93 -0.42 1.07 15 22 H 0.08 1.50 8.14 -51.93 -0.42 1.08 15 23 H 0.40 3.88 8.83 -40.82 -0.36 3.52 15 24 H 0.14 1.70 7.40 -51.93 -0.38 1.31 15 25 H 0.10 0.79 8.14 -51.93 -0.42 0.36 15 26 H 0.10 0.76 8.14 -51.93 -0.42 0.34 15 27 H 0.10 0.71 8.14 -51.93 -0.42 0.29 15 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 15 LS Contribution 256.87 15.07 3.87 3.87 Total: -1.00 -35.61 256.87 -5.76 -41.37 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -3.13 Total: 8.81 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -1.65 Total: 9.82 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.01 Total: -50.00 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: 0.16 Total: -29.33 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -35.61 -5.76 -41.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037504579.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.179 kcal (2) G-P(sol) polarization free energy of solvation -35.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds