Wall clock time and date at job start Sun Mar 29 2020 21:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86789 * 120.00248 * 2 1 4 4 H 1.48506 * 109.47300 * 269.99515 * 3 2 1 5 5 H 1.48501 * 109.47161 * 29.99913 * 3 2 1 6 6 H 1.48507 * 109.47144 * 149.99954 * 3 2 1 7 7 C 1.40049 * 119.99652 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00391 * 180.02562 * 7 2 1 9 9 C 1.46377 * 120.00358 * 359.97438 * 7 2 1 10 10 O 1.21695 * 119.99804 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00281 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99683 * 180.02562 * 11 9 7 13 13 C 1.50706 * 109.46585 * 179.97438 * 12 11 9 14 14 O 1.21275 * 120.00404 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99413 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99461 * 180.02562 * 15 13 12 17 17 C 1.53001 * 117.49681 * 223.62047 * 16 15 13 18 18 C 1.52999 * 59.99986 * 252.51359 * 17 16 15 19 19 H 0.97005 * 119.99556 * 0.02562 * 1 2 3 20 20 H 0.96999 * 120.00065 * 359.97438 * 11 9 7 21 21 H 1.08994 * 109.47435 * 60.00392 * 12 11 9 22 22 H 1.08994 * 109.47204 * 299.99995 * 12 11 9 23 23 H 0.96995 * 120.00725 * 0.02562 * 15 13 12 24 24 H 1.08998 * 115.55053 * 9.32545 * 16 15 13 25 25 H 1.09004 * 117.49834 * 359.97438 * 17 16 15 26 26 H 1.08997 * 117.49999 * 145.01929 * 17 16 15 27 27 H 1.08998 * 117.49443 * 252.51298 * 18 17 16 28 28 H 1.08998 * 117.52032 * 107.48340 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6176 0.0000 4 1 2.4884 2.0463 -1.4001 5 1 1.4382 2.6526 0.7000 6 1 3.5383 1.4400 0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2750 -2.4806 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9488 -3.6478 0.0027 12 6 1.2162 -4.9165 0.0033 13 6 2.1955 -6.0620 0.0038 14 8 3.3878 -5.8404 0.0042 15 7 1.7461 -7.3326 0.0038 16 6 2.6981 -8.4462 0.0049 17 6 2.4111 -9.6219 -0.9312 18 6 2.2217 -9.7822 0.5785 19 1 -0.4850 0.8401 -0.0004 20 1 2.9188 -3.6478 0.0023 21 1 0.5899 -4.9748 -0.8869 22 1 0.5892 -4.9736 0.8930 23 1 0.7925 -7.5099 0.0032 24 1 3.7411 -8.1729 0.1650 25 1 1.5137 -9.5670 -1.5476 26 1 3.2653 -10.1222 -1.3874 27 1 2.9515 -10.3881 1.1156 28 1 1.2003 -9.8326 0.9555 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037504579.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:21 Heat of formation + Delta-G solvation = -81.336880 kcal Electronic energy + Delta-G solvation = -13401.696478 eV Core-core repulsion = 10838.190332 eV Total energy + Delta-G solvation = -2563.506146 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.04803 -39.23331 -38.02600 -35.08265 -34.35109 -33.88828 -29.64043 -27.43630 -23.27515 -23.20339 -21.93890 -21.49255 -19.70247 -18.00810 -17.64977 -17.18108 -16.65824 -16.22062 -15.85757 -15.33878 -14.87911 -14.72912 -14.00765 -13.69258 -13.39797 -13.11940 -12.72682 -12.63683 -12.50385 -12.35609 -12.01808 -11.49102 -11.08292 -10.93968 -9.95303 -9.83072 -9.57478 -8.32092 -6.88231 1.38813 1.40845 1.42348 1.57792 1.88644 2.26859 2.43851 2.98029 3.14182 3.57589 3.64852 3.80399 4.06681 4.07978 4.43072 4.46716 4.77199 4.78605 5.02770 5.21932 5.30928 5.44626 5.84221 6.04171 6.21078 6.41516 6.84571 7.06891 7.44364 8.42220 8.63415 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.087929 B = 0.005416 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.361527 B = 5168.703253 C = 5403.435872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.030 3.970 3 Si 1.000 3.000 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.253 1.253 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.541 3.459 10 O -0.626 6.626 11 N -0.752 5.752 12 C 0.113 3.887 13 C 0.523 3.477 14 O -0.571 6.571 15 N -0.685 5.685 16 C 0.045 3.955 17 C -0.182 4.182 18 C -0.169 4.169 19 H 0.277 0.723 20 H 0.397 0.603 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.418 0.582 24 H 0.118 0.882 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.116 0.884 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.847 -15.514 -0.072 15.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.185 4.185 3 Si 0.819 3.181 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.176 1.176 7 C -0.610 4.610 8 H 0.101 0.899 9 C 0.346 3.654 10 O -0.513 6.513 11 N -0.409 5.409 12 C -0.015 4.015 13 C 0.310 3.690 14 O -0.450 6.450 15 N -0.336 5.336 16 C -0.061 4.061 17 C -0.220 4.220 18 C -0.206 4.206 19 H 0.087 0.913 20 H 0.232 0.768 21 H 0.103 0.897 22 H 0.103 0.897 23 H 0.255 0.745 24 H 0.136 0.864 25 H 0.123 0.877 26 H 0.130 0.870 27 H 0.134 0.866 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.636 -15.302 -0.064 15.728 hybrid contribution 0.094 0.539 -0.027 0.548 sum 3.730 -14.763 -0.091 15.227 Atomic orbital electron populations 1.70163 1.09370 1.29144 1.36034 1.26958 0.95622 1.04829 0.91121 0.84991 0.78675 0.74944 0.79506 1.18498 1.19335 1.17605 1.21397 0.94682 0.90110 1.54846 0.89919 1.18544 0.86860 0.83824 0.76190 1.90544 1.15618 1.87801 1.57378 1.45716 1.09866 1.03876 1.81437 1.20780 0.93834 0.83323 1.03544 1.20597 0.89005 0.84693 0.74695 1.90633 1.18165 1.85032 1.51187 1.45151 1.10734 1.03791 1.73948 1.21715 0.94506 0.82182 1.07680 1.23515 1.04743 1.00161 0.93607 1.23482 1.04094 0.96771 0.96303 0.91325 0.76804 0.89704 0.89666 0.74464 0.86395 0.87674 0.86984 0.86560 0.87153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.16 11.83 21.84 0.26 -49.90 15 2 C 0.03 1.71 5.50 85.30 0.47 2.18 15 3 Si 1.00 41.73 29.56 68.60 2.03 43.76 15 4 H -0.26 -10.33 7.11 99.48 0.71 -9.63 15 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 15 6 H -0.25 -9.97 7.11 99.48 0.71 -9.27 15 7 C -0.57 -33.75 9.54 24.83 0.24 -33.52 15 8 H 0.08 4.48 7.85 -2.91 -0.02 4.45 15 9 C 0.54 32.33 7.75 86.36 0.67 33.00 15 10 O -0.63 -41.72 15.02 -4.33 -0.07 -41.79 15 11 N -0.75 -36.61 5.52 -471.13 -2.60 -39.21 15 12 C 0.11 4.37 6.15 85.63 0.53 4.90 15 13 C 0.52 17.41 7.90 87.66 0.69 18.11 15 14 O -0.57 -22.88 15.23 -3.01 -0.05 -22.93 15 15 N -0.69 -16.06 5.57 -442.52 -2.46 -18.52 15 16 C 0.04 0.91 6.43 44.99 0.29 1.20 15 17 C -0.18 -2.60 10.46 30.59 0.32 -2.28 15 18 C -0.17 -2.22 10.45 30.59 0.32 -1.90 15 19 H 0.28 15.25 8.29 -92.70 -0.77 14.49 15 20 H 0.40 18.64 7.42 -92.71 -0.69 17.95 15 21 H 0.09 3.20 8.14 -2.39 -0.02 3.18 15 22 H 0.09 3.21 8.14 -2.39 -0.02 3.19 15 23 H 0.42 7.26 8.83 -92.71 -0.82 6.44 15 24 H 0.12 2.90 7.40 -2.39 -0.02 2.88 15 25 H 0.10 1.37 8.14 -2.39 -0.02 1.35 15 26 H 0.11 1.38 8.14 -2.39 -0.02 1.36 15 27 H 0.12 1.24 8.14 -2.39 -0.02 1.22 15 28 H 0.11 1.21 8.14 -2.39 -0.02 1.19 15 Total: -1.00 -78.37 256.87 0.32 -78.04 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: -0.31 Total: 28.86 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: 3.52 Total: 21.69 kcal Atomic # 7 Polarization: -102.83 SS G_CDS: -4.81 Total: -107.63 kcal Atomic # 8 Polarization: -64.61 SS G_CDS: -0.11 Total: -64.72 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -78.37 0.32 -78.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037504579.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.293 kcal (2) G-P(sol) polarization free energy of solvation -78.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds