Wall clock time and date at job start Sun Mar 29 2020 21:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29028 * 124.91855 * 2 1 4 4 C 1.31771 * 117.12878 * 180.02562 * 3 2 1 5 5 C 1.33644 * 114.50041 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.03938 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47280 * 90.00130 * 6 5 4 8 8 C 1.46897 * 111.00314 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46997 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99997 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99715 * 180.02562 * 9 8 7 12 12 N 1.31523 * 119.99904 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00214 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.46515 * 90.00668 * 13 11 9 15 15 H 1.48501 * 109.47047 * 210.00408 * 13 11 9 16 16 H 1.48498 * 109.46832 * 330.00703 * 13 11 9 17 17 S 1.70979 * 124.91569 * 180.02562 * 2 1 3 18 18 H 1.08997 * 109.47106 * 269.99927 * 1 2 3 19 19 H 1.08995 * 109.46993 * 30.00161 * 1 2 3 20 20 H 1.08999 * 109.46860 * 149.99764 * 1 2 3 21 21 H 1.08002 * 122.75353 * 180.27327 * 4 3 2 22 22 H 1.08996 * 109.47247 * 210.00530 * 6 5 4 23 23 H 1.09005 * 109.47214 * 330.00706 * 6 5 4 24 24 H 1.00905 * 110.99822 * 56.04494 * 7 6 5 25 25 H 1.08992 * 109.47509 * 300.00108 * 8 7 6 26 26 H 1.09000 * 109.46927 * 60.00352 * 8 7 6 27 27 H 0.96999 * 119.99929 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 3.9354 -0.4006 -0.0004 6 6 5.3575 -0.8994 -0.0004 7 7 5.8196 -1.0614 1.3846 8 6 7.2050 -1.5481 1.4238 9 6 7.6428 -1.7022 2.8576 10 1 6.9603 -1.4623 3.6594 11 6 8.9151 -2.1486 3.1456 12 7 9.2974 -2.2827 4.3969 13 14 10.0960 -2.5629 1.7587 14 1 10.8725 -1.3515 1.3914 15 1 11.0265 -3.6314 2.2035 16 1 9.3276 -3.0351 0.5790 17 16 2.4856 -1.4020 -0.0006 18 1 -0.3633 0.0000 1.0276 19 1 -0.3633 0.8899 -0.5138 20 1 -0.3633 -0.8900 -0.5139 21 1 4.2532 1.7001 0.0038 22 1 5.4058 -1.8594 -0.5143 23 1 5.9950 -0.1798 -0.5142 24 1 5.2065 -1.6745 1.9009 25 1 7.2658 -2.5127 0.9201 26 1 7.8555 -0.8333 0.9198 27 1 10.1924 -2.5971 4.5995 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037505253.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:14 Heat of formation + Delta-G solvation = 16.138285 kcal Electronic energy + Delta-G solvation = -11323.379589 eV Core-core repulsion = 9206.853154 eV Total energy + Delta-G solvation = -2116.526435 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.65725 -37.41107 -34.77080 -33.17090 -30.85199 -28.48605 -25.63477 -24.19158 -23.09693 -20.43858 -19.10460 -18.79800 -17.03706 -16.27840 -16.00179 -15.64302 -15.33702 -14.83270 -14.54344 -14.37721 -13.62535 -13.45504 -13.33626 -12.97863 -12.57756 -12.49507 -12.12876 -11.87172 -11.55357 -10.82644 -10.62112 -10.27465 -9.72704 -9.23478 -8.31538 -6.37241 -0.27057 0.37281 0.76916 1.35857 1.37482 1.48296 1.84049 2.33363 3.02524 3.27083 3.54415 3.90355 4.13555 4.21671 4.58750 4.64022 4.69346 4.73653 4.87338 5.02121 5.04423 5.27779 5.47824 5.86537 6.44623 6.55023 6.70953 6.76144 7.27602 8.85295 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.070283 B = 0.005896 C = 0.005814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.292814 B = 4747.786807 C = 4814.427380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.039 3.961 3 N -0.504 5.504 4 C 0.040 3.960 5 C -0.225 4.225 6 C 0.135 3.865 7 N -0.685 5.685 8 C 0.174 3.826 9 C -0.532 4.532 10 H 0.034 0.966 11 C 0.007 3.993 12 N -0.948 5.948 13 Si 0.955 3.045 14 H -0.265 1.265 15 H -0.281 1.281 16 H -0.247 1.247 17 S 0.136 5.864 18 H 0.097 0.903 19 H 0.094 0.906 20 H 0.103 0.897 21 H 0.179 0.821 22 H 0.045 0.955 23 H 0.096 0.904 24 H 0.335 0.665 25 H -0.007 1.007 26 H 0.032 0.968 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.121 1.152 -13.291 20.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.238 4.238 3 N -0.219 5.219 4 C -0.111 4.111 5 C -0.346 4.346 6 C 0.004 3.996 7 N -0.316 5.316 8 C 0.046 3.954 9 C -0.570 4.570 10 H 0.052 0.948 11 C -0.191 4.191 12 N -0.588 5.588 13 Si 0.777 3.223 14 H -0.190 1.190 15 H -0.207 1.207 16 H -0.170 1.170 17 S 0.390 5.610 18 H 0.116 0.884 19 H 0.113 0.887 20 H 0.121 0.879 21 H 0.196 0.804 22 H 0.063 0.937 23 H 0.114 0.886 24 H 0.152 0.848 25 H 0.011 0.989 26 H 0.050 0.950 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.279 1.212 -13.123 20.177 hybrid contribution 1.379 -0.259 -0.085 1.406 sum -13.900 0.953 -13.208 19.198 Atomic orbital electron populations 1.20631 0.82499 1.05481 1.05050 1.27738 1.03322 0.90638 1.02109 1.66338 1.05131 1.32692 1.17781 1.21838 0.91182 0.96405 1.01656 1.25909 0.99826 0.96706 1.12208 1.20292 0.88470 1.00082 0.90764 1.60468 1.03914 1.55404 1.11814 1.19794 0.86996 0.93317 0.95279 1.21313 0.99183 1.44149 0.92360 0.94767 1.25926 1.00016 0.94712 0.98404 1.70062 1.20231 1.48196 1.20331 0.85609 0.78505 0.78661 0.79492 1.18980 1.20690 1.17018 1.83788 0.96986 1.12014 1.68242 0.88425 0.88708 0.87870 0.80379 0.93692 0.88566 0.84783 0.98887 0.95041 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.46 71.24 0.75 -0.34 15 2 C 0.04 0.93 7.39 88.52 0.65 1.58 15 3 N -0.50 -14.62 10.54 -191.44 -2.02 -16.64 15 4 C 0.04 1.20 11.25 83.66 0.94 2.14 15 5 C -0.23 -6.62 6.11 24.64 0.15 -6.47 15 6 C 0.13 4.31 6.22 85.56 0.53 4.84 15 7 N -0.69 -28.09 6.48 -522.00 -3.38 -31.47 15 8 C 0.17 8.22 4.51 85.56 0.39 8.61 15 9 C -0.53 -31.01 9.87 25.60 0.25 -30.76 15 10 H 0.03 2.23 8.06 -2.91 -0.02 2.21 15 11 C 0.01 0.41 5.47 84.65 0.46 0.87 15 12 N -0.95 -59.52 13.96 21.45 0.30 -59.22 15 13 Si 0.95 43.52 27.47 68.60 1.88 45.40 15 14 H -0.26 -11.60 7.11 99.48 0.71 -10.90 15 15 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 16 H -0.25 -10.33 6.54 99.48 0.65 -9.68 15 17 S 0.14 3.26 23.18 -56.49 -1.31 1.95 15 18 H 0.10 1.19 8.14 -2.39 -0.02 1.17 15 19 H 0.09 1.24 8.14 -2.39 -0.02 1.22 15 20 H 0.10 0.96 8.14 -2.39 -0.02 0.94 15 21 H 0.18 4.94 8.06 -2.91 -0.02 4.92 15 22 H 0.05 1.34 8.14 -2.39 -0.02 1.32 15 23 H 0.10 2.88 8.14 -2.38 -0.02 2.86 15 24 H 0.34 13.79 8.71 -89.69 -0.78 13.01 15 25 H -0.01 -0.30 7.20 -2.39 -0.02 -0.31 15 26 H 0.03 1.45 7.57 -2.39 -0.02 1.43 15 27 H 0.27 15.62 8.31 -92.71 -0.77 14.85 15 Total: -1.00 -68.24 252.28 -0.07 -68.31 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.33 Total: 11.20 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 4.12 Total: -19.53 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -5.10 Total: -107.33 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.88 Total: 45.40 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.31 Total: 1.95 kcal Total: -68.24 -0.07 -68.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037505253.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.443 kcal (2) G-P(sol) polarization free energy of solvation -68.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds