Wall clock time and date at job start Sun Mar 29 2020 21:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30941 * 123.03760 * 2 1 4 4 C 1.29369 * 117.46630 * 180.02562 * 3 2 1 5 5 S 1.70924 * 110.59542 * 359.76238 * 4 3 2 6 6 C 1.36773 * 123.03889 * 180.02562 * 2 1 3 7 7 C 1.46564 * 126.18024 * 359.94239 * 6 2 1 8 8 O 1.21723 * 120.00101 * 359.97438 * 7 6 2 9 9 N 1.34777 * 119.99718 * 179.97438 * 7 6 2 10 10 C 1.36893 * 119.99873 * 179.72331 * 9 7 6 11 11 H 1.08002 * 119.99571 * 0.27715 * 10 9 7 12 12 C 1.39004 * 120.00417 * 180.27676 * 10 9 7 13 13 N 1.31404 * 119.99645 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00255 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47294 * 90.00255 * 14 12 10 16 16 H 1.48499 * 109.47218 * 210.00115 * 14 12 10 17 17 H 1.48496 * 109.47166 * 329.99947 * 14 12 10 18 18 H 1.09003 * 109.47239 * 269.97474 * 1 2 3 19 19 H 1.09002 * 109.47533 * 29.97768 * 1 2 3 20 20 H 1.08999 * 109.47475 * 149.97904 * 1 2 3 21 21 H 1.08001 * 124.70196 * 179.97438 * 4 3 2 22 22 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 23 23 H 0.96999 * 119.99869 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2209 1.0977 0.0000 4 6 3.5085 0.9721 -0.0005 5 16 3.9516 -0.6787 0.0056 6 6 2.2527 -1.1466 -0.0005 7 6 1.7327 -2.5169 0.0001 8 8 0.5312 -2.7119 0.0016 9 7 2.5849 -3.5610 -0.0011 10 6 2.0993 -4.8409 0.0052 11 1 1.0332 -5.0139 0.0065 12 6 2.9782 -5.9178 0.0098 13 7 4.2752 -5.7072 0.0087 14 14 2.3155 -7.6642 0.0177 15 1 2.1397 -8.1333 -1.3803 16 1 3.2735 -8.5541 0.7215 17 1 1.0064 -7.6937 0.7180 18 1 -0.3634 -0.0005 1.0277 19 1 -0.3634 0.8902 -0.5135 20 1 -0.3634 -0.8898 -0.5141 21 1 4.2066 1.7961 -0.0010 22 1 3.5424 -3.4056 -0.0019 23 1 4.8886 -6.4587 0.0116 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037714281.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:20 Heat of formation + Delta-G solvation = -21.664003 kcal Electronic energy + Delta-G solvation = -11578.539561 eV Core-core repulsion = 9324.540801 eV Total energy + Delta-G solvation = -2253.998760 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.04671 -39.69075 -36.16051 -33.47744 -32.66649 -29.56431 -26.88385 -25.84534 -22.70775 -20.63511 -19.56628 -19.22400 -17.40392 -16.91470 -16.25291 -16.06424 -15.46226 -14.98390 -14.58200 -14.47730 -13.66150 -13.45040 -13.27209 -12.97851 -12.55694 -12.24302 -12.11450 -11.64268 -10.87548 -10.49843 -10.48638 -10.16798 -9.75377 -8.59534 -6.04557 -0.64899 0.31331 0.71793 1.35711 1.41511 1.54721 1.58632 2.23902 2.27593 2.99163 3.16844 3.32633 4.07383 4.22266 4.37011 4.74664 4.85457 4.91491 5.30196 5.42301 5.84131 6.40595 6.64298 6.95552 7.32601 7.87544 8.57597 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.051566 B = 0.009044 C = 0.007727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.858753 B = 3095.238079 C = 3622.945085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.107 3.893 3 N -0.490 5.490 4 C 0.036 3.964 5 S 0.176 5.824 6 C -0.295 4.295 7 C 0.500 3.500 8 O -0.613 6.613 9 N -0.551 5.551 10 C -0.336 4.336 11 H 0.090 0.910 12 C -0.009 4.009 13 N -0.909 5.909 14 Si 1.002 2.998 15 H -0.268 1.268 16 H -0.267 1.267 17 H -0.269 1.269 18 H 0.077 0.923 19 H 0.088 0.912 20 H 0.075 0.925 21 H 0.251 0.749 22 H 0.395 0.605 23 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.945 8.780 -0.023 9.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.031 4.031 3 N -0.204 5.204 4 C -0.259 4.259 5 S 0.431 5.569 6 C -0.419 4.419 7 C 0.288 3.712 8 O -0.502 6.502 9 N -0.185 5.185 10 C -0.465 4.465 11 H 0.108 0.892 12 C -0.211 4.211 13 N -0.548 5.548 14 Si 0.824 3.176 15 H -0.193 1.193 16 H -0.192 1.192 17 H -0.194 1.194 18 H 0.096 0.904 19 H 0.107 0.893 20 H 0.094 0.906 21 H 0.267 0.733 22 H 0.229 0.771 23 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.156 8.531 -0.013 9.096 hybrid contribution -0.534 -0.764 0.015 0.932 sum 2.622 7.768 0.002 8.198 Atomic orbital electron populations 1.20466 0.86047 1.03698 1.03358 1.21114 0.99131 0.85060 0.97829 1.66068 1.06008 1.30592 1.17726 1.29347 0.95024 1.00933 1.00639 1.83905 1.03824 1.03548 1.65629 1.25880 0.97951 0.98692 1.19400 1.16831 0.86361 0.83176 0.84803 1.90566 1.15583 1.85210 1.58842 1.41889 1.08597 1.05385 1.62645 1.19856 0.94544 0.82122 1.50022 0.89176 1.26243 0.95146 1.04336 0.95352 1.69665 1.02402 1.34851 1.47856 0.84793 0.78195 0.75617 0.78948 1.19269 1.19164 1.19389 0.90411 0.89304 0.90605 0.73306 0.77076 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.71 9.72 71.24 0.69 -2.01 14 2 C 0.11 4.04 6.83 42.35 0.29 4.33 14 3 N -0.49 -15.72 10.49 -189.65 -1.99 -17.71 14 4 C 0.04 0.89 12.21 130.61 1.59 2.49 14 5 S 0.18 5.40 22.35 -56.49 -1.26 4.14 14 6 C -0.30 -12.28 6.51 24.10 0.16 -12.12 14 7 C 0.50 25.72 7.73 86.41 0.67 26.39 14 8 O -0.61 -34.65 13.90 -4.42 -0.06 -34.71 14 9 N -0.55 -29.37 5.28 -310.72 -1.64 -31.01 14 10 C -0.34 -19.01 9.68 84.09 0.81 -18.19 14 11 H 0.09 5.34 7.15 -2.91 -0.02 5.32 14 12 C -0.01 -0.47 5.50 84.94 0.47 -0.01 14 13 N -0.91 -47.96 13.05 21.67 0.28 -47.67 14 14 Si 1.00 41.52 29.55 68.60 2.03 43.55 14 15 H -0.27 -10.72 7.11 99.48 0.71 -10.01 14 16 H -0.27 -10.39 7.11 99.48 0.71 -9.69 14 17 H -0.27 -11.19 7.11 99.48 0.71 -10.48 14 18 H 0.08 2.61 8.14 -2.39 -0.02 2.59 14 19 H 0.09 2.60 8.14 -2.39 -0.02 2.58 14 20 H 0.08 3.09 6.06 -2.39 -0.01 3.07 14 21 H 0.25 3.36 8.06 -2.91 -0.02 3.34 14 22 H 0.39 20.05 7.08 -92.71 -0.66 19.40 14 23 H 0.28 13.84 8.31 -92.71 -0.77 13.07 14 Total: -1.00 -66.01 227.05 2.64 -63.37 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.60 Total: 19.18 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 4.68 Total: 0.87 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -3.35 Total: -96.40 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -0.06 Total: -34.71 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 16 Polarization: 5.40 SS G_CDS: -1.26 Total: 4.14 kcal Total: -66.01 2.64 -63.37 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037714281.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.706 kcal (2) G-P(sol) polarization free energy of solvation -66.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds