Wall clock time and date at job start Sun Mar 29 2020 21:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 C 1.52995 * 109.47398 * 179.97438 * 14 13 12 16 16 C 1.54263 * 110.03459 * 292.91349 * 15 14 13 17 17 C 1.54966 * 104.15826 * 217.13249 * 16 15 14 18 18 C 1.54893 * 102.77732 * 37.88857 * 17 16 15 19 19 C 1.53869 * 110.03333 * 175.69127 * 15 14 13 20 20 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 21 21 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.00892 * 110.99877 * 38.95708 * 12 2 1 25 25 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 26 26 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 27 27 H 1.08993 * 109.47298 * 300.00353 * 14 13 12 28 28 H 1.09009 * 109.46890 * 59.99830 * 14 13 12 29 29 H 1.09010 * 110.01239 * 54.30153 * 15 14 13 30 30 H 1.08999 * 110.48965 * 335.77502 * 16 15 14 31 31 H 1.08997 * 110.48873 * 98.42583 * 16 15 14 32 32 H 1.08997 * 110.72164 * 279.57324 * 17 16 15 33 33 H 1.09008 * 110.92516 * 156.28982 * 17 16 15 34 34 H 1.08998 * 110.48780 * 203.40419 * 18 17 16 35 35 H 1.08995 * 110.60189 * 80.81585 * 18 17 16 36 36 H 1.09005 * 110.03314 * 238.57282 * 19 15 14 37 37 H 1.09002 * 110.03402 * 359.95673 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 6 2.6609 0.4203 4.7694 16 6 3.7458 1.4910 4.5321 17 6 4.3760 1.7086 5.9310 18 6 4.3931 0.2784 6.5253 19 6 3.0718 -0.3502 6.0364 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7088 1.1611 -3.4845 24 1 1.4496 -1.4978 1.4101 25 1 2.7588 1.0463 2.1182 26 1 1.0870 0.6164 2.5525 27 1 1.9183 -1.3563 3.8031 28 1 3.5904 -0.9270 3.3692 29 1 1.6923 0.8972 4.9201 30 1 4.4947 1.1260 3.8292 31 1 3.2968 2.4147 4.1672 32 1 3.7553 2.3705 6.5349 33 1 5.3886 2.1031 5.8447 34 1 4.4166 0.3180 7.6143 35 1 5.2463 -0.2842 6.1465 36 1 2.3031 -0.2465 6.8022 37 1 3.2236 -1.4034 5.8001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037741285.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:05 Heat of formation + Delta-G solvation = -33.944246 kcal Electronic energy + Delta-G solvation = -14088.899177 eV Core-core repulsion = 11864.540230 eV Total energy + Delta-G solvation = -2224.358948 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.47150 -35.95977 -33.02006 -31.18221 -28.70629 -28.20080 -25.34745 -24.96579 -21.67922 -20.57151 -20.10493 -19.34780 -16.32116 -15.68309 -15.13271 -14.70151 -14.36734 -13.90556 -13.36186 -13.19504 -12.69116 -12.20886 -11.77903 -11.45956 -11.29052 -11.10325 -10.97574 -10.95587 -10.80629 -10.65125 -10.54171 -10.34910 -10.33943 -10.11843 -10.01612 -9.66997 -8.93627 -8.31786 -7.14305 -5.94022 -3.97078 3.35759 3.41512 3.46043 4.47446 4.62811 4.69849 4.77806 5.21462 5.37354 5.43602 5.48131 5.62921 5.65718 5.69334 5.76866 5.81572 5.89806 5.97400 6.08878 6.19980 6.25277 6.31951 6.35313 6.45662 6.65818 6.72499 6.75326 6.89650 7.16221 7.44651 7.78692 7.94204 8.33986 8.62115 8.69834 9.10461 9.68166 11.13091 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.057297 B = 0.005380 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.561089 B = 5203.641060 C = 5285.028853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.032 0.968 4 C -0.494 4.494 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.275 1.275 11 H -0.288 1.288 12 N -0.687 5.687 13 C 0.060 3.940 14 C -0.108 4.108 15 C -0.091 4.091 16 C -0.120 4.120 17 C -0.126 4.126 18 C -0.124 4.124 19 C -0.121 4.121 20 H 0.004 0.996 21 H 0.088 0.912 22 H 0.027 0.973 23 H 0.259 0.741 24 H 0.323 0.677 25 H 0.063 0.937 26 H 0.014 0.986 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.502 0.065 15.189 15.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.102 3.898 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.199 1.199 11 H -0.214 1.214 12 N -0.316 5.316 13 C -0.070 4.070 14 C -0.146 4.146 15 C -0.110 4.110 16 C -0.158 4.158 17 C -0.164 4.164 18 C -0.162 4.162 19 C -0.158 4.158 20 H 0.023 0.977 21 H 0.107 0.893 22 H 0.046 0.954 23 H 0.069 0.931 24 H 0.139 0.861 25 H 0.081 0.919 26 H 0.032 0.968 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.090 0.261 14.868 15.423 hybrid contribution -0.788 -0.257 -0.687 1.077 sum 3.302 0.004 14.181 14.560 Atomic orbital electron populations 1.22421 1.00825 0.99105 1.00396 1.19166 0.89537 0.94383 0.86693 0.95028 1.21188 1.30005 1.12372 0.89681 0.91994 1.24965 0.95376 0.95254 0.99042 1.69892 1.37416 1.23329 1.23246 0.86507 0.78426 0.80027 0.82462 1.20783 1.19946 1.21445 1.60805 1.57929 1.09158 1.03687 1.21915 0.98077 0.96103 0.90869 1.21704 1.01829 0.97461 0.93602 1.21761 0.98750 0.95951 0.94550 1.22475 0.97990 0.98643 0.96659 1.22516 1.00404 0.96651 0.96788 1.22346 0.97928 0.96295 0.99613 1.22218 0.96899 0.99749 0.96965 0.97696 0.89328 0.95413 0.93137 0.86109 0.91859 0.96808 0.92745 0.91369 0.91503 0.91085 0.91821 0.91926 0.91927 0.92265 0.91747 0.92339 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 8.94 37.16 0.33 -3.84 16 2 C 0.21 5.46 2.57 -68.87 -0.18 5.28 16 3 H 0.03 0.90 7.80 -51.92 -0.40 0.50 16 4 C -0.49 -14.03 8.84 -34.44 -0.30 -14.33 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -26.23 11.32 55.43 0.63 -25.60 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 N -0.69 -15.13 6.23 -107.95 -0.67 -15.80 16 13 C 0.06 1.11 5.33 -3.82 -0.02 1.09 16 14 C -0.11 -1.60 4.60 -26.73 -0.12 -1.73 16 15 C -0.09 -1.14 2.93 -89.51 -0.26 -1.41 16 16 C -0.12 -1.47 5.50 -25.03 -0.14 -1.61 16 17 C -0.13 -1.30 6.91 -24.69 -0.17 -1.47 16 18 C -0.12 -1.23 6.83 -25.07 -0.17 -1.40 16 19 C -0.12 -1.31 6.46 -25.62 -0.17 -1.47 16 20 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16 21 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 22 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.32 6.76 8.47 -39.30 -0.33 6.42 16 25 H 0.06 1.22 7.40 -51.93 -0.38 0.83 16 26 H 0.01 0.26 7.44 -51.93 -0.39 -0.13 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.05 8.02 -51.92 -0.42 0.64 16 29 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 30 H 0.07 0.94 7.77 -51.93 -0.40 0.53 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.70 7.67 -51.93 -0.40 0.30 16 LS Contribution 290.11 15.07 4.37 4.37 Total: -1.00 -28.70 290.11 -8.77 -37.47 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -6.78 Total: 2.19 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -1.29 Total: -19.45 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: -0.05 Total: -41.40 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.70 -8.77 -37.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037741285.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.524 kcal (2) G-P(sol) polarization free energy of solvation -28.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds