Wall clock time and date at job start Sun Mar 29 2020 21:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 C 1.52995 * 109.47398 * 179.97438 * 14 13 12 16 16 C 1.54263 * 110.03459 * 292.91349 * 15 14 13 17 17 C 1.54966 * 104.15826 * 217.13249 * 16 15 14 18 18 C 1.54893 * 102.77732 * 37.88857 * 17 16 15 19 19 C 1.53869 * 110.03333 * 175.69127 * 15 14 13 20 20 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 21 21 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.00892 * 110.99877 * 38.95708 * 12 2 1 25 25 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 26 26 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 27 27 H 1.08993 * 109.47298 * 300.00353 * 14 13 12 28 28 H 1.09009 * 109.46890 * 59.99830 * 14 13 12 29 29 H 1.09010 * 110.01239 * 54.30153 * 15 14 13 30 30 H 1.08999 * 110.48965 * 335.77502 * 16 15 14 31 31 H 1.08997 * 110.48873 * 98.42583 * 16 15 14 32 32 H 1.08997 * 110.72164 * 279.57324 * 17 16 15 33 33 H 1.09008 * 110.92516 * 156.28982 * 17 16 15 34 34 H 1.08998 * 110.48780 * 203.40419 * 18 17 16 35 35 H 1.08995 * 110.60189 * 80.81585 * 18 17 16 36 36 H 1.09005 * 110.03314 * 238.57282 * 19 15 14 37 37 H 1.09002 * 110.03402 * 359.95673 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 6 2.6609 0.4203 4.7694 16 6 3.7458 1.4910 4.5321 17 6 4.3760 1.7086 5.9310 18 6 4.3931 0.2784 6.5253 19 6 3.0718 -0.3502 6.0364 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7088 1.1611 -3.4845 24 1 1.4496 -1.4978 1.4101 25 1 2.7588 1.0463 2.1182 26 1 1.0870 0.6164 2.5525 27 1 1.9183 -1.3563 3.8031 28 1 3.5904 -0.9270 3.3692 29 1 1.6923 0.8972 4.9201 30 1 4.4947 1.1260 3.8292 31 1 3.2968 2.4147 4.1672 32 1 3.7553 2.3705 6.5349 33 1 5.3886 2.1031 5.8447 34 1 4.4166 0.3180 7.6143 35 1 5.2463 -0.2842 6.1465 36 1 2.3031 -0.2465 6.8022 37 1 3.2236 -1.4034 5.8001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037741285.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:05 Heat of formation + Delta-G solvation = -50.476667 kcal Electronic energy + Delta-G solvation = -14089.616077 eV Core-core repulsion = 11864.540230 eV Total energy + Delta-G solvation = -2225.075847 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.50320 -37.71987 -34.85161 -32.77968 -29.93552 -29.49183 -27.27619 -26.56407 -23.06658 -22.18118 -21.37109 -20.37607 -18.37362 -16.89615 -16.70985 -16.14521 -15.71331 -15.46984 -15.02023 -14.28263 -14.14553 -13.78401 -13.55813 -13.00538 -12.88820 -12.78007 -12.64051 -12.23803 -12.10603 -12.03682 -11.91267 -11.83237 -11.46916 -11.43266 -11.38304 -11.15891 -10.94067 -10.49287 -8.96219 -8.09975 -6.21735 1.43407 1.43830 1.55133 2.44288 3.18009 3.54974 3.76176 3.80169 4.01883 4.26561 4.38852 4.56980 4.61348 4.67503 4.70886 4.77138 4.82446 4.84899 4.88969 4.97147 5.03477 5.10492 5.16211 5.24496 5.25880 5.29761 5.43368 5.46257 5.53525 5.61443 5.68251 5.81639 6.26810 6.65370 6.84302 6.94626 7.48540 8.95769 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.057297 B = 0.005380 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.561089 B = 5203.641060 C = 5285.028853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.213 3.787 3 H -0.002 1.002 4 C -0.517 4.517 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.964 3.036 9 H -0.277 1.277 10 H -0.268 1.268 11 H -0.282 1.282 12 N -0.691 5.691 13 C 0.064 3.936 14 C -0.096 4.096 15 C -0.089 4.089 16 C -0.125 4.125 17 C -0.122 4.122 18 C -0.122 4.122 19 C -0.118 4.118 20 H 0.023 0.977 21 H 0.062 0.938 22 H 0.033 0.967 23 H 0.261 0.739 24 H 0.331 0.669 25 H 0.049 0.951 26 H 0.013 0.987 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.826 -0.673 16.236 16.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.105 3.895 3 H 0.015 0.985 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.789 3.211 9 H -0.203 1.203 10 H -0.193 1.193 11 H -0.208 1.208 12 N -0.320 5.320 13 C -0.066 4.066 14 C -0.134 4.134 15 C -0.108 4.108 16 C -0.163 4.163 17 C -0.160 4.160 18 C -0.160 4.160 19 C -0.156 4.156 20 H 0.042 0.958 21 H 0.081 0.919 22 H 0.052 0.948 23 H 0.070 0.930 24 H 0.148 0.852 25 H 0.068 0.932 26 H 0.031 0.969 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.416 -0.482 15.936 16.544 hybrid contribution -0.893 0.008 -0.991 1.334 sum 3.524 -0.474 14.945 15.362 Atomic orbital electron populations 1.22226 0.99982 0.99273 0.99971 1.18949 0.90099 0.92588 0.87893 0.98450 1.21472 1.30452 1.12510 0.91107 0.92720 1.25765 0.95413 0.95910 1.02013 1.70019 1.38034 1.24373 1.24017 0.85473 0.77927 0.79048 0.78649 1.20318 1.19263 1.20778 1.60686 1.57766 1.09776 1.03811 1.21947 0.97882 0.95680 0.91073 1.21602 1.01316 0.97747 0.92735 1.21746 0.98944 0.95702 0.94440 1.22484 0.97732 0.98225 0.97824 1.22508 1.00784 0.97304 0.95354 1.22354 0.97306 0.95676 1.00662 1.22201 0.97777 0.99470 0.96137 0.95818 0.91950 0.94797 0.92979 0.85228 0.93221 0.96891 0.91846 0.91991 0.91492 0.92523 0.92507 0.91029 0.91227 0.90526 0.91879 0.91084 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.72 8.94 71.98 0.64 -7.08 16 2 C 0.21 11.27 2.57 44.17 0.11 11.38 16 3 H 0.00 -0.14 7.80 -2.38 -0.02 -0.16 16 4 C -0.52 -29.63 8.84 25.60 0.23 -29.40 16 5 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 6 C 0.01 0.39 5.30 84.66 0.45 0.84 16 7 N -0.92 -54.45 11.32 21.45 0.24 -54.21 16 8 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 9 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 N -0.69 -30.47 6.23 -495.44 -3.09 -33.56 16 13 C 0.06 2.35 5.33 86.30 0.46 2.81 16 14 C -0.10 -2.76 4.60 30.59 0.14 -2.62 16 15 C -0.09 -2.12 2.93 -10.07 -0.03 -2.15 16 16 C -0.13 -2.97 5.50 31.69 0.17 -2.80 16 17 C -0.12 -2.27 6.91 31.91 0.22 -2.05 16 18 C -0.12 -2.12 6.83 31.67 0.22 -1.91 16 19 C -0.12 -2.28 6.46 31.32 0.20 -2.07 16 20 H 0.02 1.04 7.45 -2.39 -0.02 1.02 16 21 H 0.06 3.45 6.07 -2.39 -0.01 3.43 16 22 H 0.03 1.59 8.13 -2.39 -0.02 1.57 16 23 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 24 H 0.33 13.64 8.47 -89.70 -0.76 12.88 16 25 H 0.05 1.95 7.40 -2.39 -0.02 1.93 16 26 H 0.01 0.48 7.44 -2.39 -0.02 0.46 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.06 1.86 8.02 -2.38 -0.02 1.84 16 29 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.06 1.49 7.77 -2.39 -0.02 1.47 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.06 1.26 7.67 -2.39 -0.02 1.24 16 Total: -1.00 -60.64 290.11 2.25 -58.39 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.25 Total: 17.67 kcal Atomic # 6 Polarization: -37.86 SS G_CDS: 2.82 Total: -35.05 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -2.85 Total: -87.77 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -60.64 2.25 -58.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037741285.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.911 kcal (2) G-P(sol) polarization free energy of solvation -60.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds