Wall clock time and date at job start Sun Mar 29 2020 21:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31512 * 120.00357 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99802 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.46841 * 89.99881 * 8 6 4 10 10 H 1.48494 * 109.47129 * 210.00104 * 8 6 4 11 11 H 1.48501 * 109.47268 * 330.00196 * 8 6 4 12 12 N 1.46902 * 109.46626 * 239.99653 * 2 1 3 13 13 C 1.46904 * 110.99949 * 85.00566 * 12 2 1 14 14 H 1.08998 * 109.46740 * 324.99371 * 13 12 2 15 15 C 1.52999 * 109.47439 * 84.99497 * 13 12 2 16 16 C 1.53001 * 109.47005 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.46803 * 299.99926 * 16 15 13 18 18 C 1.52999 * 109.47280 * 60.00242 * 17 16 15 19 19 H 1.09003 * 109.46927 * 59.99870 * 18 17 16 20 20 C 1.53006 * 109.47096 * 179.97438 * 18 17 16 21 21 C 1.52992 * 109.47301 * 299.99941 * 18 17 16 22 22 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 23 23 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 25 25 H 0.97001 * 120.00117 * 180.02562 * 7 6 4 26 26 H 1.00896 * 111.00544 * 321.04473 * 12 2 1 27 27 H 1.09000 * 109.47120 * 300.00288 * 15 13 12 28 28 H 1.09003 * 109.46927 * 59.99878 * 15 13 12 29 29 H 1.08994 * 109.46758 * 180.02562 * 16 15 13 30 30 H 1.08998 * 109.47051 * 59.99950 * 16 15 13 31 31 H 1.08998 * 109.47336 * 299.99848 * 17 16 15 32 32 H 1.09002 * 109.46872 * 179.97438 * 17 16 15 33 33 H 1.09002 * 109.46936 * 180.02562 * 20 18 17 34 34 H 1.08999 * 109.46764 * 299.99734 * 20 18 17 35 35 H 1.08998 * 109.47137 * 59.99840 * 20 18 17 36 36 H 1.09003 * 109.47072 * 299.99840 * 21 18 17 37 37 H 1.08998 * 109.47498 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 2.1381 -0.8590 3.5566 8 14 0.6260 1.2800 2.6541 9 1 -0.8019 0.8746 2.6993 10 1 0.9774 1.9955 3.9070 11 1 0.8493 2.1774 1.4922 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3469 14 1 1.2577 0.9328 -2.2907 15 6 3.4111 0.9807 -2.3225 16 6 3.4762 1.9342 -3.5173 17 6 3.3705 1.1323 -4.8160 18 6 2.0418 0.3741 -4.8404 19 1 1.2170 1.0844 -4.7838 20 6 1.9358 -0.4274 -6.1395 21 6 1.9766 -0.5793 -3.6457 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.9035 -0.5277 4.4376 26 1 1.4495 -1.4980 -1.4100 27 1 3.4863 1.5523 -1.3974 28 1 4.2360 0.2703 -2.3786 29 1 4.4229 2.4740 -3.5001 30 1 2.6514 2.6445 -3.4606 31 1 4.1953 0.4220 -4.8726 32 1 3.4164 1.8116 -5.6672 33 1 0.9890 -0.9672 -6.1571 34 1 1.9820 0.2522 -6.9904 35 1 2.7606 -1.1376 -6.1965 36 1 2.8014 -1.2897 -3.7023 37 1 1.0303 -1.1199 -3.6633 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871389.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:26 Heat of formation + Delta-G solvation = -25.543860 kcal Electronic energy + Delta-G solvation = -14693.783250 eV Core-core repulsion = 12469.788570 eV Total energy + Delta-G solvation = -2223.994680 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.84166 -35.67969 -32.63316 -31.87285 -30.37631 -27.02332 -26.23513 -25.00886 -22.01061 -21.10109 -19.59984 -19.49176 -16.66577 -15.13023 -15.07319 -14.64502 -14.09980 -14.06661 -13.70561 -12.97356 -12.86915 -12.32212 -12.24909 -12.14531 -11.80990 -11.57363 -11.28271 -11.11834 -10.85595 -10.69344 -10.61089 -10.30002 -10.08984 -9.94219 -9.72320 -9.39944 -9.06233 -8.53123 -7.34778 -6.00755 -3.97366 3.27582 3.37869 3.40367 4.43679 4.71318 4.82979 4.92647 5.23264 5.29889 5.35566 5.50113 5.59645 5.66883 5.70691 5.74989 5.84138 5.94047 5.95949 6.08873 6.13718 6.23915 6.27635 6.33664 6.40200 6.47708 6.50966 6.57315 6.67598 6.79586 6.89472 7.17550 7.78154 8.00985 8.42885 8.75619 9.11186 9.62562 11.12975 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.049496 B = 0.007539 C = 0.007389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.563829 B = 3713.147661 C = 3788.347010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.183 3.817 3 H 0.034 0.966 4 C -0.495 4.495 5 H 0.081 0.919 6 C 0.066 3.934 7 N -0.903 5.903 8 Si 0.885 3.115 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.670 5.670 13 C 0.086 3.914 14 H 0.032 0.968 15 C -0.106 4.106 16 C -0.120 4.120 17 C -0.111 4.111 18 C -0.090 4.090 19 H 0.065 0.935 20 C -0.145 4.145 21 C -0.113 4.113 22 H 0.025 0.975 23 H 0.053 0.947 24 H 0.044 0.956 25 H 0.262 0.738 26 H 0.330 0.670 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.831 4.005 -16.445 16.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.074 3.926 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.099 0.901 6 C -0.135 4.135 7 N -0.542 5.542 8 Si 0.716 3.284 9 H -0.209 1.209 10 H -0.225 1.225 11 H -0.195 1.195 12 N -0.299 5.299 13 C -0.024 4.024 14 H 0.050 0.950 15 C -0.144 4.144 16 C -0.158 4.158 17 C -0.149 4.149 18 C -0.110 4.110 19 H 0.084 0.916 20 C -0.203 4.203 21 C -0.151 4.151 22 H 0.044 0.956 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.148 0.852 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.156 4.079 -16.070 16.581 hybrid contribution -1.704 0.941 0.121 1.951 sum -1.860 5.020 -15.950 16.824 Atomic orbital electron populations 1.22863 1.01738 1.00780 0.98726 1.19663 0.88332 0.95129 0.89520 0.94867 1.21011 1.30958 1.13637 0.87786 0.90086 1.24947 0.96037 0.96585 0.95919 1.69886 1.46057 1.40431 0.97794 0.86905 0.80579 0.84081 0.76815 1.20865 1.22460 1.19523 1.60622 1.57864 1.08687 1.02767 1.21460 0.96411 0.94321 0.90211 0.95023 1.21516 0.97977 0.97779 0.97139 1.21559 1.01180 0.98058 0.94998 1.21580 0.97301 0.98692 0.97314 1.21109 0.97932 0.97272 0.94642 0.91650 1.21823 1.01600 0.99923 0.96930 1.21762 1.01747 0.97902 0.93712 0.95600 0.92795 0.93772 0.92766 0.85240 0.91868 0.91511 0.92278 0.92559 0.91982 0.92664 0.92913 0.93074 0.92708 0.91264 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.02 8.63 37.16 0.32 -3.69 16 2 C 0.18 4.37 1.98 -68.86 -0.14 4.24 16 3 H 0.03 0.84 6.17 -51.93 -0.32 0.52 16 4 C -0.50 -14.20 9.42 -34.44 -0.32 -14.52 16 5 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 6 C 0.07 1.93 5.45 -17.82 -0.10 1.84 16 7 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 8 Si 0.89 22.35 24.37 -169.99 -4.14 18.21 16 9 H -0.28 -6.93 6.87 56.52 0.39 -6.54 16 10 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 11 H -0.27 -6.56 6.53 56.52 0.37 -6.19 16 12 N -0.67 -13.79 6.04 -100.95 -0.61 -14.40 16 13 C 0.09 1.47 2.30 -67.71 -0.16 1.31 16 14 H 0.03 0.57 7.11 -51.93 -0.37 0.20 16 15 C -0.11 -1.74 5.41 -26.73 -0.14 -1.88 16 16 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 17 C -0.11 -1.28 5.20 -26.73 -0.14 -1.42 16 18 C -0.09 -1.06 2.72 -90.62 -0.25 -1.31 16 19 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 20 C -0.15 -1.44 9.20 37.16 0.34 -1.10 16 21 C -0.11 -1.57 4.48 -26.74 -0.12 -1.69 16 22 H 0.02 0.49 7.43 -51.93 -0.39 0.11 16 23 H 0.05 1.15 8.13 -51.93 -0.42 0.72 16 24 H 0.04 1.02 3.27 -51.93 -0.17 0.85 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.33 6.43 8.09 -39.29 -0.32 6.11 16 27 H 0.06 1.17 7.43 -51.93 -0.39 0.78 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 LS Contribution 279.11 15.07 4.21 4.21 Total: -1.00 -29.89 279.11 -7.26 -37.15 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.62 Total: 2.08 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -0.86 Total: -19.94 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.16 Total: -41.70 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.14 Total: 18.21 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.89 -7.26 -37.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871389.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.604 kcal (2) G-P(sol) polarization free energy of solvation -29.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds