Wall clock time and date at job start Sun Mar 29 2020 21:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31512 * 120.00357 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99802 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.46841 * 89.99881 * 8 6 4 10 10 H 1.48494 * 109.47129 * 210.00104 * 8 6 4 11 11 H 1.48501 * 109.47268 * 330.00196 * 8 6 4 12 12 N 1.46902 * 109.46626 * 239.99653 * 2 1 3 13 13 C 1.46904 * 110.99949 * 85.00566 * 12 2 1 14 14 H 1.08998 * 109.46740 * 324.99371 * 13 12 2 15 15 C 1.52999 * 109.47439 * 84.99497 * 13 12 2 16 16 C 1.53001 * 109.47005 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.46803 * 299.99926 * 16 15 13 18 18 C 1.52999 * 109.47280 * 60.00242 * 17 16 15 19 19 H 1.09003 * 109.46927 * 59.99870 * 18 17 16 20 20 C 1.53006 * 109.47096 * 179.97438 * 18 17 16 21 21 C 1.52992 * 109.47301 * 299.99941 * 18 17 16 22 22 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 23 23 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 25 25 H 0.97001 * 120.00117 * 180.02562 * 7 6 4 26 26 H 1.00896 * 111.00544 * 321.04473 * 12 2 1 27 27 H 1.09000 * 109.47120 * 300.00288 * 15 13 12 28 28 H 1.09003 * 109.46927 * 59.99878 * 15 13 12 29 29 H 1.08994 * 109.46758 * 180.02562 * 16 15 13 30 30 H 1.08998 * 109.47051 * 59.99950 * 16 15 13 31 31 H 1.08998 * 109.47336 * 299.99848 * 17 16 15 32 32 H 1.09002 * 109.46872 * 179.97438 * 17 16 15 33 33 H 1.09002 * 109.46936 * 180.02562 * 20 18 17 34 34 H 1.08999 * 109.46764 * 299.99734 * 20 18 17 35 35 H 1.08998 * 109.47137 * 59.99840 * 20 18 17 36 36 H 1.09003 * 109.47072 * 299.99840 * 21 18 17 37 37 H 1.08998 * 109.47498 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 2.1381 -0.8590 3.5566 8 14 0.6260 1.2800 2.6541 9 1 -0.8019 0.8746 2.6993 10 1 0.9774 1.9955 3.9070 11 1 0.8493 2.1774 1.4922 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3469 14 1 1.2577 0.9328 -2.2907 15 6 3.4111 0.9807 -2.3225 16 6 3.4762 1.9342 -3.5173 17 6 3.3705 1.1323 -4.8160 18 6 2.0418 0.3741 -4.8404 19 1 1.2170 1.0844 -4.7838 20 6 1.9358 -0.4274 -6.1395 21 6 1.9766 -0.5793 -3.6457 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.9035 -0.5277 4.4376 26 1 1.4495 -1.4980 -1.4100 27 1 3.4863 1.5523 -1.3974 28 1 4.2360 0.2703 -2.3786 29 1 4.4229 2.4740 -3.5001 30 1 2.6514 2.6445 -3.4606 31 1 4.1953 0.4220 -4.8726 32 1 3.4164 1.8116 -5.6672 33 1 0.9890 -0.9672 -6.1571 34 1 1.9820 0.2522 -6.9904 35 1 2.7606 -1.1376 -6.1965 36 1 2.8014 -1.2897 -3.7023 37 1 1.0303 -1.1199 -3.6633 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871389.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:26 Heat of formation + Delta-G solvation = -45.367899 kcal Electronic energy + Delta-G solvation = -14694.642885 eV Core-core repulsion = 12469.788570 eV Total energy + Delta-G solvation = -2224.854314 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.06330 -37.28911 -34.52131 -33.11935 -31.96792 -28.50392 -27.24555 -27.07735 -23.13149 -22.66980 -21.13142 -20.61078 -18.77917 -16.98345 -16.45810 -15.94038 -15.56644 -15.15701 -15.10809 -14.69776 -14.28667 -14.12180 -13.60365 -13.29308 -13.18286 -13.01744 -12.67585 -12.57661 -12.15110 -12.10458 -12.00291 -11.76980 -11.54553 -11.32817 -11.26026 -10.93420 -10.85195 -10.75316 -9.00459 -8.27948 -6.29836 1.26915 1.33037 1.43100 2.30725 3.06019 3.39828 3.84291 3.85863 4.13320 4.30776 4.33400 4.42691 4.51149 4.55173 4.59621 4.65270 4.66958 4.76268 4.83281 4.92216 4.95665 5.06033 5.12315 5.22081 5.25507 5.34965 5.39240 5.41046 5.46819 5.48691 5.63306 5.69672 6.08522 6.72421 6.76340 6.82508 7.35300 8.89675 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.049496 B = 0.007539 C = 0.007389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.563829 B = 3713.147661 C = 3788.347010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.189 3.811 3 H 0.024 0.976 4 C -0.503 4.503 5 H 0.034 0.966 6 C 0.008 3.992 7 N -0.951 5.951 8 Si 0.952 3.048 9 H -0.266 1.266 10 H -0.297 1.297 11 H -0.253 1.253 12 N -0.684 5.684 13 C 0.086 3.914 14 H 0.030 0.970 15 C -0.106 4.106 16 C -0.114 4.114 17 C -0.108 4.108 18 C -0.088 4.088 19 H 0.068 0.932 20 C -0.141 4.141 21 C -0.107 4.107 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.035 0.965 25 H 0.265 0.735 26 H 0.335 0.665 27 H 0.033 0.967 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.089 5.492 -18.871 19.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.079 3.921 3 H 0.042 0.958 4 C -0.541 4.541 5 H 0.053 0.947 6 C -0.189 4.189 7 N -0.592 5.592 8 Si 0.779 3.221 9 H -0.192 1.192 10 H -0.225 1.225 11 H -0.178 1.178 12 N -0.314 5.314 13 C -0.024 4.024 14 H 0.048 0.952 15 C -0.145 4.145 16 C -0.152 4.152 17 C -0.146 4.146 18 C -0.107 4.107 19 H 0.086 0.914 20 C -0.199 4.199 21 C -0.144 4.144 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.153 0.847 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.415 5.561 -18.533 19.401 hybrid contribution -1.212 0.391 0.863 1.539 sum -2.628 5.952 -17.670 18.829 Atomic orbital electron populations 1.22719 0.99614 1.01392 0.99770 1.19393 0.89809 0.93925 0.88943 0.95840 1.21297 1.30133 1.12440 0.90255 0.94729 1.25812 0.97619 1.00025 0.95397 1.70046 1.48038 1.42648 0.98511 0.85819 0.79122 0.80028 0.77144 1.19200 1.22486 1.17773 1.60484 1.58026 1.09572 1.03310 1.21567 0.96464 0.94064 0.90286 0.95209 1.21512 0.97395 0.97937 0.97622 1.21520 1.01996 0.97488 0.94191 1.21576 0.97146 0.98862 0.96981 1.21101 0.98165 0.96980 0.94411 0.91394 1.21782 1.01857 1.00019 0.96218 1.21709 1.01878 0.97939 0.92916 0.92413 0.92520 0.94650 0.92605 0.84661 0.94768 0.92599 0.91191 0.92163 0.92034 0.90390 0.92571 0.91549 0.92645 0.91798 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.39 8.63 71.98 0.62 -6.77 16 2 C 0.19 9.01 1.98 44.17 0.09 9.10 16 3 H 0.02 1.18 6.17 -2.39 -0.01 1.16 16 4 C -0.50 -29.64 9.42 25.60 0.24 -29.40 16 5 H 0.03 2.29 8.06 -2.91 -0.02 2.27 16 6 C 0.01 0.48 5.45 84.66 0.46 0.94 16 7 N -0.95 -60.93 13.96 21.45 0.30 -60.64 16 8 Si 0.95 46.00 24.37 68.60 1.67 47.67 16 9 H -0.27 -12.14 6.87 99.48 0.68 -11.46 16 10 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 11 H -0.25 -11.48 6.53 99.48 0.65 -10.83 16 12 N -0.68 -28.11 6.04 -473.31 -2.86 -30.97 16 13 C 0.09 2.82 2.30 44.91 0.10 2.92 16 14 H 0.03 1.00 7.11 -2.39 -0.02 0.99 16 15 C -0.11 -3.44 5.41 30.59 0.17 -3.27 16 16 C -0.11 -2.73 5.92 30.59 0.18 -2.54 16 17 C -0.11 -2.14 5.20 30.59 0.16 -1.99 16 18 C -0.09 -1.78 2.72 -10.79 -0.03 -1.81 16 19 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 20 C -0.14 -2.31 9.20 71.98 0.66 -1.65 16 21 C -0.11 -2.74 4.48 30.59 0.14 -2.60 16 22 H 0.06 2.04 7.43 -2.39 -0.02 2.03 16 23 H 0.06 2.31 8.13 -2.39 -0.02 2.30 16 24 H 0.03 1.54 3.27 -2.39 -0.01 1.53 16 25 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 26 H 0.34 12.95 8.09 -89.70 -0.73 12.22 16 27 H 0.03 1.27 7.43 -2.39 -0.02 1.25 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 1.53 8.12 -2.39 -0.02 1.51 16 Total: -1.00 -65.75 279.11 2.11 -63.63 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.21 Total: 17.38 kcal Atomic # 6 Polarization: -39.86 SS G_CDS: 2.79 Total: -37.07 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -2.56 Total: -91.61 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.67 Total: 47.67 kcal Total: -65.75 2.11 -63.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871389.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.266 kcal (2) G-P(sol) polarization free energy of solvation -65.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds