Wall clock time and date at job start Sun Mar 29 2020 21:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47472 * 2 1 4 4 C 1.50703 * 109.46942 * 119.99481 * 2 1 3 5 5 H 1.08002 * 119.99797 * 120.00269 * 4 2 1 6 6 C 1.37878 * 120.00397 * 300.00022 * 4 2 1 7 7 N 1.31520 * 119.99797 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00220 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46941 * 60.00282 * 8 6 4 10 10 H 1.48503 * 109.47126 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47182 * 300.00146 * 8 6 4 12 12 N 1.46901 * 109.47559 * 239.99642 * 2 1 3 13 13 C 1.46896 * 110.99913 * 84.99842 * 12 2 1 14 14 H 1.09002 * 109.47220 * 325.00418 * 13 12 2 15 15 C 1.52997 * 109.46848 * 85.00348 * 13 12 2 16 16 C 1.52999 * 109.47317 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 13 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 19 19 H 1.08993 * 109.47194 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.47127 * 59.99878 * 18 17 16 21 21 C 1.53000 * 109.47053 * 205.00062 * 13 12 2 22 22 H 1.09001 * 109.47409 * 300.00565 * 1 2 3 23 23 H 1.09007 * 109.46927 * 60.00188 * 1 2 3 24 24 H 1.08997 * 109.47472 * 180.02562 * 1 2 3 25 25 H 0.96989 * 120.00023 * 179.97438 * 7 6 4 26 26 H 1.00896 * 111.00002 * 208.96112 * 12 2 1 27 27 H 1.08996 * 109.47853 * 300.00000 * 15 13 12 28 28 H 1.09002 * 109.47153 * 60.00028 * 15 13 12 29 29 H 1.09000 * 109.47486 * 180.02562 * 16 15 13 30 30 H 1.09002 * 109.46716 * 60.00091 * 16 15 13 31 31 H 1.09002 * 109.46935 * 299.99411 * 17 16 15 32 32 H 1.09001 * 109.46812 * 179.97438 * 17 16 15 33 33 H 1.09001 * 109.46801 * 300.00272 * 20 18 17 34 34 H 1.08998 * 109.46505 * 59.99871 * 20 18 17 35 35 H 1.09000 * 109.47050 * 180.02562 * 20 18 17 36 36 H 1.08992 * 109.47399 * 300.00238 * 21 13 12 37 37 H 1.09004 * 109.46724 * 60.00724 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9426 0.8298 2.6034 8 14 2.3212 -1.1201 4.0081 9 1 3.8062 -1.1207 4.0083 10 1 1.8258 -0.4203 5.2206 11 1 1.8257 -2.5200 4.0079 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2224 -2.3468 14 1 1.2577 0.9328 -2.2907 15 6 3.4111 0.9807 -2.3223 16 6 3.4769 1.9333 -3.5177 17 6 3.3717 1.1305 -4.8160 18 6 2.0431 0.3722 -4.8405 19 1 1.9679 -0.1993 -5.7656 20 6 0.8852 1.3694 -4.7623 21 6 1.9772 -0.5799 -3.6453 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 0.7080 1.1610 3.4843 26 1 2.9173 -1.1206 -1.0285 27 1 3.4863 1.5523 -1.3973 28 1 4.2360 0.2704 -2.3784 29 1 4.4237 2.4732 -3.5005 30 1 2.6521 2.6437 -3.4620 31 1 4.1965 0.4201 -4.8717 32 1 3.4181 1.8092 -5.6676 33 1 0.9602 1.9413 -3.8374 34 1 0.9321 2.0480 -5.6139 35 1 -0.0613 0.8291 -4.7793 36 1 2.8020 -1.2902 -3.7014 37 1 1.0305 -1.1201 -3.6627 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871390.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:28 Heat of formation + Delta-G solvation = -31.757932 kcal Electronic energy + Delta-G solvation = -14809.183753 eV Core-core repulsion = 12584.919611 eV Total energy + Delta-G solvation = -2224.264142 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.99031 -35.32282 -32.56738 -31.25510 -29.67901 -26.63411 -26.46420 -25.07404 -21.92711 -21.43130 -19.58932 -18.37887 -16.49444 -15.36170 -14.93349 -14.35356 -13.97434 -13.59109 -13.44065 -13.04749 -12.64735 -12.18162 -12.10141 -11.67958 -11.32281 -11.22944 -10.95252 -10.81201 -10.74088 -10.59002 -10.36684 -10.31123 -10.09333 -9.89281 -9.78118 -9.40613 -8.78858 -8.43709 -7.13867 -5.99456 -4.05593 3.32544 3.36861 3.39791 4.42416 4.92427 4.97338 5.06166 5.31618 5.49291 5.50011 5.56814 5.60916 5.74151 5.91562 5.94309 5.98923 6.08514 6.16467 6.23478 6.30600 6.47127 6.48223 6.50955 6.63651 6.81361 6.85894 6.96648 7.20884 7.30433 7.59146 7.82197 7.95969 8.32402 8.47961 8.75650 9.06590 9.60210 11.06845 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.052348 B = 0.007336 C = 0.007101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.749628 B = 3815.804723 C = 3942.354720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.518 4.518 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.686 5.686 13 C 0.088 3.912 14 H 0.072 0.928 15 C -0.147 4.147 16 C -0.117 4.117 17 C -0.112 4.112 18 C -0.091 4.091 19 H 0.062 0.938 20 C -0.150 4.150 21 C -0.100 4.100 22 H 0.079 0.921 23 H 0.003 0.997 24 H 0.030 0.970 25 H 0.261 0.739 26 H 0.329 0.671 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 1.278 -12.231 12.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.105 3.895 3 H 0.019 0.981 4 C -0.557 4.557 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.315 5.315 13 C -0.023 4.023 14 H 0.090 0.910 15 C -0.186 4.186 16 C -0.155 4.155 17 C -0.149 4.149 18 C -0.110 4.110 19 H 0.081 0.919 20 C -0.207 4.207 21 C -0.138 4.138 22 H 0.098 0.902 23 H 0.022 0.978 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.146 0.854 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.151 1.139 -12.224 12.464 hybrid contribution 1.101 0.130 1.149 1.597 sum 3.252 1.269 -11.075 11.612 Atomic orbital electron populations 1.21722 0.98091 0.99233 0.99197 1.19071 0.92391 0.92388 0.85668 0.98141 1.21259 1.31360 1.12439 0.90596 0.92379 1.24918 0.95093 0.95005 0.98989 1.69889 1.36663 1.22939 1.23479 0.86605 0.79045 0.79816 0.82179 1.20379 1.21321 1.20220 1.60799 1.31914 1.32750 1.06077 1.21548 0.95584 0.93545 0.91581 0.90974 1.22282 0.99417 0.98915 0.97979 1.21525 1.01092 0.98083 0.94795 1.21550 0.97322 0.98717 0.97330 1.21096 0.94849 0.96630 0.98399 0.91908 1.21933 0.97978 0.99116 1.01700 1.21525 1.01799 0.97181 0.93314 0.90224 0.97799 0.95084 0.92934 0.85395 0.91853 0.92541 0.92855 0.91928 0.92365 0.92724 0.91853 0.93462 0.92865 0.92651 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.17 37.16 0.34 -2.82 16 2 C 0.21 5.45 2.41 -68.87 -0.17 5.28 16 3 H 0.00 0.03 7.11 -51.93 -0.37 -0.34 16 4 C -0.52 -14.41 8.59 -34.44 -0.30 -14.71 16 5 H 0.06 1.59 7.62 -52.49 -0.40 1.19 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.76 11.32 55.43 0.63 -25.13 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.69 -14.88 6.05 -100.96 -0.61 -15.49 16 13 C 0.09 1.60 2.00 -67.72 -0.14 1.46 16 14 H 0.07 1.41 5.40 -51.93 -0.28 1.13 16 15 C -0.15 -2.44 5.16 -26.73 -0.14 -2.58 16 16 C -0.12 -1.60 5.65 -26.73 -0.15 -1.76 16 17 C -0.11 -1.36 5.45 -26.73 -0.15 -1.51 16 18 C -0.09 -1.16 3.19 -90.64 -0.29 -1.45 16 19 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 20 C -0.15 -1.90 8.50 37.16 0.32 -1.58 16 21 C -0.10 -1.54 5.05 -26.75 -0.14 -1.67 16 22 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 23 H 0.00 0.07 7.43 -51.93 -0.39 -0.31 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.33 7.04 7.96 -39.29 -0.31 6.72 16 27 H 0.06 1.20 7.43 -51.93 -0.39 0.81 16 28 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.87 6.43 -51.93 -0.33 0.53 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.88 4.81 -51.93 -0.25 0.64 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 278.69 15.07 4.20 4.20 Total: -1.00 -28.06 278.69 -8.09 -36.15 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.39 Total: 3.50 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -0.89 Total: -19.71 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.02 Total: -40.62 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.06 -8.09 -36.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871390.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.393 kcal (2) G-P(sol) polarization free energy of solvation -28.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds