Wall clock time and date at job start Sun Mar 29 2020 21:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47472 * 2 1 4 4 C 1.50703 * 109.46942 * 119.99481 * 2 1 3 5 5 H 1.08002 * 119.99797 * 120.00269 * 4 2 1 6 6 C 1.37878 * 120.00397 * 300.00022 * 4 2 1 7 7 N 1.31520 * 119.99797 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00220 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46941 * 60.00282 * 8 6 4 10 10 H 1.48503 * 109.47126 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47182 * 300.00146 * 8 6 4 12 12 N 1.46901 * 109.47559 * 239.99642 * 2 1 3 13 13 C 1.46896 * 110.99913 * 84.99842 * 12 2 1 14 14 H 1.09002 * 109.47220 * 325.00418 * 13 12 2 15 15 C 1.52997 * 109.46848 * 85.00348 * 13 12 2 16 16 C 1.52999 * 109.47317 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 13 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 19 19 H 1.08993 * 109.47194 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.47127 * 59.99878 * 18 17 16 21 21 C 1.53000 * 109.47053 * 205.00062 * 13 12 2 22 22 H 1.09001 * 109.47409 * 300.00565 * 1 2 3 23 23 H 1.09007 * 109.46927 * 60.00188 * 1 2 3 24 24 H 1.08997 * 109.47472 * 180.02562 * 1 2 3 25 25 H 0.96989 * 120.00023 * 179.97438 * 7 6 4 26 26 H 1.00896 * 111.00002 * 208.96112 * 12 2 1 27 27 H 1.08996 * 109.47853 * 300.00000 * 15 13 12 28 28 H 1.09002 * 109.47153 * 60.00028 * 15 13 12 29 29 H 1.09000 * 109.47486 * 180.02562 * 16 15 13 30 30 H 1.09002 * 109.46716 * 60.00091 * 16 15 13 31 31 H 1.09002 * 109.46935 * 299.99411 * 17 16 15 32 32 H 1.09001 * 109.46812 * 179.97438 * 17 16 15 33 33 H 1.09001 * 109.46801 * 300.00272 * 20 18 17 34 34 H 1.08998 * 109.46505 * 59.99871 * 20 18 17 35 35 H 1.09000 * 109.47050 * 180.02562 * 20 18 17 36 36 H 1.08992 * 109.47399 * 300.00238 * 21 13 12 37 37 H 1.09004 * 109.46724 * 60.00724 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9426 0.8298 2.6034 8 14 2.3212 -1.1201 4.0081 9 1 3.8062 -1.1207 4.0083 10 1 1.8258 -0.4203 5.2206 11 1 1.8257 -2.5200 4.0079 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2224 -2.3468 14 1 1.2577 0.9328 -2.2907 15 6 3.4111 0.9807 -2.3223 16 6 3.4769 1.9333 -3.5177 17 6 3.3717 1.1305 -4.8160 18 6 2.0431 0.3722 -4.8405 19 1 1.9679 -0.1993 -5.7656 20 6 0.8852 1.3694 -4.7623 21 6 1.9772 -0.5799 -3.6453 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 0.7080 1.1610 3.4843 26 1 2.9173 -1.1206 -1.0285 27 1 3.4863 1.5523 -1.3973 28 1 4.2360 0.2704 -2.3784 29 1 4.4237 2.4732 -3.5005 30 1 2.6521 2.6437 -3.4620 31 1 4.1965 0.4201 -4.8717 32 1 3.4181 1.8092 -5.6676 33 1 0.9602 1.9413 -3.8374 34 1 0.9321 2.0480 -5.6139 35 1 -0.0613 0.8291 -4.7793 36 1 2.8020 -1.2902 -3.7014 37 1 1.0305 -1.1201 -3.6627 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871390.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:28 Heat of formation + Delta-G solvation = -48.323845 kcal Electronic energy + Delta-G solvation = -14809.902105 eV Core-core repulsion = 12584.919611 eV Total energy + Delta-G solvation = -2224.982494 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.28163 -37.09200 -34.46100 -32.49189 -31.39366 -28.31388 -27.57926 -27.19661 -23.13815 -22.93741 -21.47675 -19.61323 -18.43133 -16.88597 -16.74330 -15.80217 -15.39684 -14.99571 -14.86648 -14.62264 -14.13655 -13.66799 -13.45953 -13.37913 -12.85754 -12.80291 -12.62209 -12.52661 -12.24068 -12.20059 -12.04863 -11.86980 -11.75774 -11.23713 -11.04456 -10.91379 -10.73341 -10.55977 -8.93587 -8.13607 -6.27969 1.40944 1.43218 1.50799 2.40824 3.14513 3.59286 3.81602 3.93262 4.16885 4.30518 4.37246 4.47422 4.53080 4.69100 4.73757 4.82618 4.87395 4.93860 5.04907 5.08700 5.13052 5.14959 5.23051 5.25579 5.31022 5.36867 5.46899 5.50588 5.57217 5.66436 5.72010 5.88173 6.22300 6.52091 6.82310 7.04241 7.42650 8.92000 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.052348 B = 0.007336 C = 0.007101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.749628 B = 3815.804723 C = 3942.354720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.219 3.781 3 H -0.032 1.032 4 C -0.540 4.540 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.963 3.037 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.686 5.686 13 C 0.087 3.913 14 H 0.053 0.947 15 C -0.141 4.141 16 C -0.113 4.113 17 C -0.107 4.107 18 C -0.087 4.087 19 H 0.086 0.914 20 C -0.150 4.150 21 C -0.093 4.093 22 H 0.056 0.944 23 H 0.018 0.982 24 H 0.026 0.974 25 H 0.262 0.738 26 H 0.330 0.670 27 H 0.029 0.971 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.736 0.753 -13.595 14.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.111 3.889 3 H -0.014 1.014 4 C -0.578 4.578 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.788 3.212 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.315 5.315 13 C -0.023 4.023 14 H 0.071 0.929 15 C -0.181 4.181 16 C -0.151 4.151 17 C -0.144 4.144 18 C -0.105 4.105 19 H 0.104 0.896 20 C -0.207 4.207 21 C -0.131 4.131 22 H 0.075 0.925 23 H 0.037 0.963 24 H 0.045 0.955 25 H 0.072 0.928 26 H 0.147 0.853 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.015 0.613 -13.611 13.954 hybrid contribution 0.819 0.320 1.546 1.778 sum 3.833 0.932 -12.065 12.694 Atomic orbital electron populations 1.21548 0.98101 0.98662 0.98763 1.18836 0.92337 0.90762 0.86996 1.01442 1.21599 1.31716 1.12692 0.91790 0.92382 1.25752 0.95168 0.95679 1.02071 1.70023 1.37457 1.24122 1.24207 0.85546 0.78727 0.78675 0.78281 1.19565 1.20835 1.19624 1.60757 1.32001 1.33269 1.05520 1.21621 0.95786 0.93285 0.91576 0.92854 1.22177 0.98609 0.99187 0.98078 1.21506 1.01720 0.97591 0.94314 1.21539 0.97029 0.98969 0.96871 1.21103 0.95327 0.96292 0.97826 0.89604 1.21926 0.97902 0.99280 1.01610 1.21461 1.01520 0.97435 0.92714 0.92522 0.96316 0.95486 0.92845 0.85317 0.95179 0.91900 0.91473 0.92354 0.91581 0.90333 0.93826 0.91319 0.93145 0.92052 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.87 9.17 71.98 0.66 -5.21 16 2 C 0.22 11.59 2.41 44.17 0.11 11.69 16 3 H -0.03 -1.87 7.11 -2.39 -0.02 -1.89 16 4 C -0.54 -30.50 8.59 25.60 0.22 -30.28 16 5 H 0.06 3.20 7.62 -2.91 -0.02 3.18 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -54.13 11.32 21.45 0.24 -53.89 16 8 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 N -0.69 -30.21 6.05 -473.33 -2.86 -33.07 16 13 C 0.09 3.18 2.00 44.92 0.09 3.27 16 14 H 0.05 2.14 5.40 -2.39 -0.01 2.13 16 15 C -0.14 -4.71 5.16 30.59 0.16 -4.55 16 16 C -0.11 -2.93 5.65 30.60 0.17 -2.75 16 17 C -0.11 -2.25 5.45 30.60 0.17 -2.08 16 18 C -0.09 -1.98 3.19 -10.81 -0.03 -2.01 16 19 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 20 C -0.15 -3.50 8.50 71.98 0.61 -2.89 16 21 C -0.09 -2.73 5.05 30.58 0.15 -2.57 16 22 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 23 H 0.02 0.87 7.43 -2.38 -0.02 0.85 16 24 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.26 14.67 8.31 -92.72 -0.77 13.90 16 26 H 0.33 14.26 7.96 -89.70 -0.71 13.54 16 27 H 0.03 1.17 7.43 -2.39 -0.02 1.16 16 28 H 0.06 1.98 8.13 -2.39 -0.02 1.96 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.56 6.43 -2.39 -0.02 1.55 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.04 1.18 4.81 -2.39 -0.01 1.17 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -60.44 278.69 2.47 -57.96 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.31 Total: 18.99 kcal Atomic # 6 Polarization: -38.99 SS G_CDS: 2.76 Total: -36.24 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -2.62 Total: -86.96 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -60.44 2.47 -57.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871390.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.639 kcal (2) G-P(sol) polarization free energy of solvation -60.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds