Wall clock time and date at job start Sun Mar 29 2020 21:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08988 * 109.47315 * 2 1 4 4 C 1.50698 * 109.47142 * 120.00895 * 2 1 3 5 5 H 1.07996 * 120.00438 * 119.99855 * 4 2 1 6 6 C 1.37880 * 119.99671 * 299.99319 * 4 2 1 7 7 N 1.31519 * 119.99975 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00015 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46897 * 89.99991 * 8 6 4 10 10 H 1.48491 * 109.47271 * 209.99875 * 8 6 4 11 11 H 1.48498 * 109.47413 * 330.00341 * 8 6 4 12 12 N 1.46908 * 109.46896 * 240.00333 * 2 1 3 13 13 C 1.46893 * 111.00142 * 151.72063 * 12 2 1 14 14 H 1.09001 * 109.47180 * 34.84283 * 13 12 2 15 15 C 1.53001 * 109.46684 * 274.84375 * 13 12 2 16 16 C 1.53006 * 109.46953 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46769 * 60.00267 * 16 15 13 18 18 C 1.52999 * 109.47112 * 299.99991 * 17 16 15 19 19 H 1.09003 * 109.46753 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.46822 * 299.99694 * 18 17 16 21 21 C 1.52998 * 109.47468 * 60.00186 * 18 17 16 22 22 H 1.09007 * 109.46891 * 303.09097 * 1 2 3 23 23 H 1.09004 * 109.47125 * 183.09719 * 1 2 3 24 24 H 1.08997 * 109.47219 * 63.08805 * 1 2 3 25 25 H 0.96999 * 119.99830 * 179.97438 * 7 6 4 26 26 H 1.00904 * 110.99545 * 275.67583 * 12 2 1 27 27 H 1.09001 * 109.47237 * 299.99873 * 15 13 12 28 28 H 1.09005 * 109.47232 * 60.00531 * 15 13 12 29 29 H 1.09005 * 109.47111 * 179.97438 * 16 15 13 30 30 H 1.09001 * 109.47316 * 300.00157 * 16 15 13 31 31 H 1.09001 * 109.47291 * 59.99874 * 17 16 15 32 32 H 1.08999 * 109.46948 * 179.97438 * 17 16 15 33 33 H 1.09003 * 109.46975 * 60.00726 * 20 18 17 34 34 H 1.09005 * 109.47197 * 179.97438 * 20 18 17 35 35 H 1.08999 * 109.47522 * 300.00280 * 20 18 17 36 36 H 1.08995 * 109.47215 * 180.02562 * 21 18 17 37 37 H 1.09001 * 109.47112 * 60.00008 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3226 -1.1199 4.0078 9 1 3.6306 -0.5445 4.4117 10 1 1.3446 -0.9494 5.1122 11 1 2.4881 -2.5657 3.7120 12 7 2.0197 -0.6925 -1.1996 13 6 3.3338 -0.1767 -1.6056 14 1 3.9096 0.0890 -0.7191 15 6 3.1462 1.0631 -2.4824 16 6 4.5150 1.6007 -2.9049 17 6 5.2633 0.5255 -3.6954 18 6 5.4508 -0.7143 -2.8186 19 1 5.9843 -1.4801 -3.3817 20 6 6.2587 -0.3412 -1.5740 21 6 4.0821 -1.2519 -2.3961 22 1 -0.3633 0.5611 0.8610 23 1 -0.3633 -1.0262 0.0555 24 1 -0.3633 0.4651 -0.9163 25 1 0.7083 1.1606 3.4845 26 1 2.0523 -1.6903 -1.0530 27 1 2.5703 0.7974 -3.3690 28 1 2.6134 1.8293 -1.9191 29 1 4.3813 2.4837 -3.5300 30 1 5.0905 1.8665 -2.0182 31 1 4.6878 0.2598 -4.5821 32 1 6.2382 0.9087 -3.9967 33 1 5.7255 0.4247 -1.0108 34 1 6.3919 -1.2244 -0.9491 35 1 7.2338 0.0418 -1.8750 36 1 4.2157 -2.1348 -1.7711 37 1 3.5066 -1.5177 -3.2828 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871391.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:29 Heat of formation + Delta-G solvation = -32.736622 kcal Electronic energy + Delta-G solvation = -14894.908178 eV Core-core repulsion = 12670.601597 eV Total energy + Delta-G solvation = -2224.306581 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.88836 -35.29045 -32.45476 -31.25453 -29.79711 -26.48234 -26.47728 -24.99922 -22.00328 -21.09465 -19.77774 -18.14268 -16.48566 -15.50447 -14.79057 -14.33573 -14.10957 -13.63477 -13.37546 -12.89546 -12.47501 -12.20788 -12.10824 -11.30825 -11.24691 -11.17593 -11.02075 -10.91626 -10.69465 -10.65537 -10.41197 -10.26769 -10.02575 -9.85289 -9.58133 -9.30844 -8.99502 -8.37320 -7.18268 -5.97192 -4.08912 3.27730 3.34921 3.37806 4.41485 4.97072 5.03604 5.05807 5.29302 5.48072 5.59489 5.67450 5.75131 5.88081 5.89903 5.95441 6.08389 6.14690 6.22464 6.28310 6.39889 6.54598 6.58757 6.61730 6.72533 6.86493 6.96796 7.04055 7.20852 7.38973 7.58594 7.78850 8.13527 8.22983 8.39908 8.74342 9.05382 9.58560 11.04172 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034889 B = 0.009024 C = 0.008037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.341317 B = 3102.023262 C = 3482.894282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.208 3.792 3 H 0.031 0.969 4 C -0.541 4.541 5 H 0.052 0.948 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.888 3.112 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.691 5.691 13 C 0.092 3.908 14 H 0.049 0.951 15 C -0.104 4.104 16 C -0.121 4.121 17 C -0.111 4.111 18 C -0.088 4.088 19 H 0.061 0.939 20 C -0.152 4.152 21 C -0.114 4.114 22 H 0.078 0.922 23 H 0.024 0.976 24 H 0.012 0.988 25 H 0.260 0.740 26 H 0.327 0.673 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.056 0.944 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.398 -0.864 -9.245 11.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.100 3.900 3 H 0.049 0.951 4 C -0.581 4.581 5 H 0.070 0.930 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.320 5.320 13 C -0.018 4.018 14 H 0.067 0.933 15 C -0.142 4.142 16 C -0.159 4.159 17 C -0.148 4.148 18 C -0.107 4.107 19 H 0.080 0.920 20 C -0.209 4.209 21 C -0.152 4.152 22 H 0.096 0.904 23 H 0.043 0.957 24 H 0.031 0.969 25 H 0.070 0.930 26 H 0.144 0.856 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.945 -0.333 -9.532 11.798 hybrid contribution 0.884 -0.872 1.714 2.117 sum 7.829 -1.206 -7.817 11.129 Atomic orbital electron populations 1.21678 0.98005 0.99245 0.99261 1.19149 0.92232 0.94029 0.84562 0.95125 1.21852 1.31603 1.12654 0.91945 0.92956 1.24937 0.94886 0.94896 0.98893 1.69897 1.36444 1.22841 1.23351 0.86667 0.78607 0.80118 0.83026 1.20784 1.21163 1.20016 1.60929 1.23941 1.08412 1.38766 1.21355 0.90594 0.93692 0.96200 0.93315 1.21506 0.95453 0.97696 0.99561 1.21588 0.97144 0.97402 0.99755 1.21538 0.99527 0.95684 0.98077 1.21052 0.96244 0.97011 0.96369 0.92010 1.21954 0.99126 1.01978 0.97843 1.21733 0.95058 0.98198 1.00180 0.90361 0.95729 0.96902 0.92964 0.85636 0.92298 0.92206 0.92703 0.91949 0.92319 0.92772 0.91483 0.92999 0.93458 0.92546 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.11 9.25 37.16 0.34 -2.77 16 2 C 0.21 5.31 2.38 -68.86 -0.16 5.14 16 3 H 0.03 0.86 7.13 -51.94 -0.37 0.49 16 4 C -0.54 -14.85 8.42 -34.44 -0.29 -15.14 16 5 H 0.05 1.43 7.69 -52.49 -0.40 1.02 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.89 -25.50 11.35 55.43 0.63 -24.87 16 8 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.69 -14.95 6.07 -100.96 -0.61 -15.56 16 13 C 0.09 1.73 2.02 -67.72 -0.14 1.60 16 14 H 0.05 1.04 6.04 -51.93 -0.31 0.73 16 15 C -0.10 -1.79 5.41 -26.73 -0.14 -1.94 16 16 C -0.12 -1.72 5.65 -26.73 -0.15 -1.87 16 17 C -0.11 -1.40 5.45 -26.73 -0.15 -1.55 16 18 C -0.09 -1.18 3.19 -90.62 -0.29 -1.47 16 19 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 20 C -0.15 -2.09 8.50 37.16 0.32 -1.78 16 21 C -0.11 -1.79 4.72 -26.73 -0.13 -1.91 16 22 H 0.08 2.13 6.16 -51.93 -0.32 1.81 16 23 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.33 7.01 7.95 -39.29 -0.31 6.70 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 1.15 7.48 -51.93 -0.39 0.76 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.92 6.43 -51.93 -0.33 0.58 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.04 4.81 -51.93 -0.25 0.79 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 280.11 15.07 4.22 4.22 Total: -1.00 -27.77 280.11 -8.14 -35.91 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.48 Total: 3.87 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -0.88 Total: -19.94 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.02 Total: -40.43 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.77 -8.14 -35.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871391.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.171 kcal (2) G-P(sol) polarization free energy of solvation -27.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds