Wall clock time and date at job start Sun Mar 29 2020 21:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08988 * 109.47315 * 2 1 4 4 C 1.50698 * 109.47142 * 120.00895 * 2 1 3 5 5 H 1.07996 * 120.00438 * 119.99855 * 4 2 1 6 6 C 1.37880 * 119.99671 * 299.99319 * 4 2 1 7 7 N 1.31519 * 119.99975 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00015 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46897 * 89.99991 * 8 6 4 10 10 H 1.48491 * 109.47271 * 209.99875 * 8 6 4 11 11 H 1.48498 * 109.47413 * 330.00341 * 8 6 4 12 12 N 1.46908 * 109.46896 * 240.00333 * 2 1 3 13 13 C 1.46893 * 111.00142 * 151.72063 * 12 2 1 14 14 H 1.09001 * 109.47180 * 34.84283 * 13 12 2 15 15 C 1.53001 * 109.46684 * 274.84375 * 13 12 2 16 16 C 1.53006 * 109.46953 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46769 * 60.00267 * 16 15 13 18 18 C 1.52999 * 109.47112 * 299.99991 * 17 16 15 19 19 H 1.09003 * 109.46753 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.46822 * 299.99694 * 18 17 16 21 21 C 1.52998 * 109.47468 * 60.00186 * 18 17 16 22 22 H 1.09007 * 109.46891 * 303.09097 * 1 2 3 23 23 H 1.09004 * 109.47125 * 183.09719 * 1 2 3 24 24 H 1.08997 * 109.47219 * 63.08805 * 1 2 3 25 25 H 0.96999 * 119.99830 * 179.97438 * 7 6 4 26 26 H 1.00904 * 110.99545 * 275.67583 * 12 2 1 27 27 H 1.09001 * 109.47237 * 299.99873 * 15 13 12 28 28 H 1.09005 * 109.47232 * 60.00531 * 15 13 12 29 29 H 1.09005 * 109.47111 * 179.97438 * 16 15 13 30 30 H 1.09001 * 109.47316 * 300.00157 * 16 15 13 31 31 H 1.09001 * 109.47291 * 59.99874 * 17 16 15 32 32 H 1.08999 * 109.46948 * 179.97438 * 17 16 15 33 33 H 1.09003 * 109.46975 * 60.00726 * 20 18 17 34 34 H 1.09005 * 109.47197 * 179.97438 * 20 18 17 35 35 H 1.08999 * 109.47522 * 300.00280 * 20 18 17 36 36 H 1.08995 * 109.47215 * 180.02562 * 21 18 17 37 37 H 1.09001 * 109.47112 * 60.00008 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3226 -1.1199 4.0078 9 1 3.6306 -0.5445 4.4117 10 1 1.3446 -0.9494 5.1122 11 1 2.4881 -2.5657 3.7120 12 7 2.0197 -0.6925 -1.1996 13 6 3.3338 -0.1767 -1.6056 14 1 3.9096 0.0890 -0.7191 15 6 3.1462 1.0631 -2.4824 16 6 4.5150 1.6007 -2.9049 17 6 5.2633 0.5255 -3.6954 18 6 5.4508 -0.7143 -2.8186 19 1 5.9843 -1.4801 -3.3817 20 6 6.2587 -0.3412 -1.5740 21 6 4.0821 -1.2519 -2.3961 22 1 -0.3633 0.5611 0.8610 23 1 -0.3633 -1.0262 0.0555 24 1 -0.3633 0.4651 -0.9163 25 1 0.7083 1.1606 3.4845 26 1 2.0523 -1.6903 -1.0530 27 1 2.5703 0.7974 -3.3690 28 1 2.6134 1.8293 -1.9191 29 1 4.3813 2.4837 -3.5300 30 1 5.0905 1.8665 -2.0182 31 1 4.6878 0.2598 -4.5821 32 1 6.2382 0.9087 -3.9967 33 1 5.7255 0.4247 -1.0108 34 1 6.3919 -1.2244 -0.9491 35 1 7.2338 0.0418 -1.8750 36 1 4.2157 -2.1348 -1.7711 37 1 3.5066 -1.5177 -3.2828 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871391.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:29 Heat of formation + Delta-G solvation = -48.986192 kcal Electronic energy + Delta-G solvation = -14895.612812 eV Core-core repulsion = 12670.601597 eV Total energy + Delta-G solvation = -2225.011215 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.20902 -37.09416 -34.36164 -32.51074 -31.54355 -28.15812 -27.62192 -27.15640 -23.25396 -22.63094 -21.64886 -19.37507 -18.57569 -16.91920 -16.74310 -15.76001 -15.37279 -15.34983 -14.63729 -14.47969 -14.13494 -13.79280 -13.44346 -13.18303 -12.99528 -12.85750 -12.47912 -12.45170 -12.28213 -12.13817 -12.03677 -11.85110 -11.78955 -11.24764 -11.11269 -10.90269 -10.66888 -10.52117 -9.04023 -8.08653 -6.30104 1.36226 1.37478 1.47304 2.38180 3.12443 3.58355 3.86073 3.90094 4.20150 4.36744 4.50080 4.52568 4.55559 4.66419 4.76458 4.84565 4.87529 5.00076 5.03612 5.12747 5.14985 5.20850 5.24012 5.32072 5.36996 5.41193 5.48557 5.50442 5.52176 5.66352 5.72325 6.05186 6.17125 6.41121 6.84070 7.02806 7.41601 8.89842 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034889 B = 0.009024 C = 0.008037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.341317 B = 3102.023262 C = 3482.894282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.215 3.785 3 H -0.003 1.003 4 C -0.555 4.555 5 H 0.050 0.950 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.952 3.048 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.269 1.269 12 N -0.686 5.686 13 C 0.091 3.909 14 H 0.018 0.982 15 C -0.100 4.100 16 C -0.117 4.117 17 C -0.106 4.106 18 C -0.085 4.085 19 H 0.087 0.913 20 C -0.151 4.151 21 C -0.107 4.107 22 H 0.054 0.946 23 H 0.025 0.975 24 H 0.025 0.975 25 H 0.262 0.738 26 H 0.328 0.672 27 H 0.064 0.936 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.802 -1.746 -10.361 13.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 H 0.015 0.985 4 C -0.595 4.595 5 H 0.068 0.932 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.778 3.222 9 H -0.204 1.204 10 H -0.206 1.206 11 H -0.193 1.193 12 N -0.315 5.315 13 C -0.019 4.019 14 H 0.036 0.964 15 C -0.138 4.138 16 C -0.155 4.155 17 C -0.143 4.143 18 C -0.104 4.104 19 H 0.105 0.895 20 C -0.209 4.209 21 C -0.145 4.145 22 H 0.073 0.927 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.072 0.928 26 H 0.145 0.855 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.356 -1.219 -10.663 13.601 hybrid contribution 0.436 -0.567 2.044 2.166 sum 8.792 -1.787 -8.619 12.441 Atomic orbital electron populations 1.21527 0.97846 0.98955 0.98854 1.18912 0.92342 0.92434 0.85692 0.98495 1.22106 1.31665 1.12695 0.92993 0.93222 1.25716 0.95071 0.95610 1.01874 1.70024 1.37264 1.23978 1.24072 0.85646 0.78077 0.79144 0.79324 1.20358 1.20634 1.19337 1.60896 1.25880 1.08206 1.36545 1.21431 0.89073 0.95562 0.95833 0.96433 1.21459 0.97402 0.96116 0.98862 1.21563 0.95142 0.98753 1.00040 1.21529 1.00631 0.94422 0.97717 1.21079 0.94666 0.98123 0.96487 0.89477 1.21940 1.00051 1.01033 0.97830 1.21682 0.96309 0.96743 0.99779 0.92674 0.95554 0.95557 0.92850 0.85513 0.91697 0.95290 0.90955 0.92882 0.91213 0.90375 0.93986 0.93581 0.91240 0.93084 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.82 9.25 71.98 0.67 -5.15 16 2 C 0.22 11.28 2.38 44.17 0.11 11.38 16 3 H 0.00 -0.17 7.13 -2.39 -0.02 -0.19 16 4 C -0.56 -31.01 8.42 25.60 0.22 -30.80 16 5 H 0.05 2.74 7.69 -2.91 -0.02 2.71 16 6 C 0.02 0.96 5.30 84.65 0.45 1.41 16 7 N -0.91 -53.58 11.35 21.45 0.24 -53.34 16 8 Si 0.95 44.12 29.54 68.60 2.03 46.14 16 9 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 N -0.69 -30.06 6.07 -473.32 -2.87 -32.93 16 13 C 0.09 3.46 2.02 44.92 0.09 3.55 16 14 H 0.02 0.78 6.04 -2.39 -0.01 0.77 16 15 C -0.10 -3.46 5.41 30.60 0.17 -3.29 16 16 C -0.12 -3.16 5.65 30.60 0.17 -2.98 16 17 C -0.11 -2.32 5.45 30.59 0.17 -2.15 16 18 C -0.08 -2.05 3.19 -10.79 -0.03 -2.08 16 19 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 20 C -0.15 -3.93 8.50 71.98 0.61 -3.32 16 21 C -0.11 -3.21 4.72 30.59 0.14 -3.06 16 22 H 0.05 3.08 6.16 -2.38 -0.01 3.06 16 23 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 26 H 0.33 14.12 7.95 -89.69 -0.71 13.40 16 27 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.03 1.15 7.48 -2.38 -0.02 1.13 16 29 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.05 1.53 6.43 -2.39 -0.02 1.52 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.04 1.30 4.81 -2.39 -0.01 1.28 16 34 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.05 1.57 8.12 -2.39 -0.02 1.55 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -59.90 280.11 2.46 -57.44 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.31 Total: 19.19 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 2.75 Total: -36.50 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -2.63 Total: -86.28 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -59.90 2.46 -57.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871391.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.456 kcal (2) G-P(sol) polarization free energy of solvation -59.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds