Wall clock time and date at job start Sun Mar 29 2020 21:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47004 * 2 1 4 4 C 1.50700 * 109.47072 * 120.00196 * 2 1 3 5 5 H 1.07999 * 120.00055 * 119.99391 * 4 2 1 6 6 C 1.37872 * 119.99746 * 299.99616 * 4 2 1 7 7 N 1.31518 * 119.99879 * 179.97438 * 6 4 2 8 8 Si 1.86808 * 120.00286 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.47004 * 89.99996 * 8 6 4 10 10 H 1.48497 * 109.46952 * 209.99978 * 8 6 4 11 11 H 1.48493 * 109.46832 * 330.00120 * 8 6 4 12 12 N 1.46904 * 109.46784 * 240.00048 * 2 1 3 13 13 C 1.46898 * 111.00246 * 86.49164 * 12 2 1 14 14 H 1.09003 * 109.46827 * 325.76937 * 13 12 2 15 15 C 1.53000 * 109.47142 * 205.77442 * 13 12 2 16 16 C 1.52998 * 109.47213 * 179.97438 * 15 13 12 17 17 C 1.53010 * 109.46879 * 59.99940 * 16 15 13 18 18 C 1.52999 * 109.46876 * 300.00077 * 17 16 15 19 19 H 1.09000 * 109.47126 * 299.99753 * 18 17 16 20 20 C 1.53000 * 109.46962 * 179.97438 * 18 17 16 21 21 C 1.52998 * 109.47430 * 60.00260 * 18 17 16 22 22 H 1.09007 * 109.46738 * 65.84035 * 1 2 3 23 23 H 1.08991 * 109.47560 * 185.84389 * 1 2 3 24 24 H 1.08997 * 109.46570 * 305.84566 * 1 2 3 25 25 H 0.97008 * 119.99592 * 179.97438 * 7 6 4 26 26 H 1.00900 * 110.99747 * 322.53353 * 12 2 1 27 27 H 1.09000 * 109.46972 * 299.99988 * 15 13 12 28 28 H 1.09005 * 109.47210 * 59.99958 * 15 13 12 29 29 H 1.09001 * 109.47039 * 300.00445 * 16 15 13 30 30 H 1.08999 * 109.47520 * 179.97438 * 16 15 13 31 31 H 1.08997 * 109.46610 * 180.02562 * 17 16 15 32 32 H 1.09000 * 109.47041 * 59.99882 * 17 16 15 33 33 H 1.09003 * 109.47504 * 299.99989 * 20 18 17 34 34 H 1.09003 * 109.46980 * 59.99988 * 20 18 17 35 35 H 1.09003 * 109.47527 * 179.97438 * 20 18 17 36 36 H 1.09001 * 109.47112 * 180.02562 * 21 18 17 37 37 H 1.09000 * 109.47380 * 59.99649 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4826 7 7 2.1373 -0.8597 3.5565 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9761 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0197 -0.6925 -1.1995 13 6 2.1160 0.2307 -2.3380 14 1 1.3138 0.9664 -2.2781 15 6 1.9902 -0.5556 -3.6444 16 6 2.0899 0.4060 -4.8302 17 6 3.4417 1.1219 -4.7939 18 6 3.5674 1.9083 -3.4875 19 1 2.7651 2.6437 -3.4274 20 6 4.9194 2.6236 -3.4510 21 6 3.4677 0.9466 -2.3017 22 1 -0.3633 0.4206 -0.9377 23 1 -0.3634 -1.0222 0.1046 24 1 -0.3632 0.6018 0.8330 25 1 1.9032 -0.5279 4.4375 26 1 1.4352 -1.4838 -1.4240 27 1 2.7923 -1.2913 -3.7043 28 1 1.0270 -1.0653 -3.6704 29 1 1.2876 1.1414 -4.7700 30 1 2.0007 -0.1542 -5.7609 31 1 3.5125 1.8073 -5.6385 32 1 4.2440 0.3865 -4.8540 33 1 5.7215 1.8880 -3.5109 34 1 4.9909 3.3087 -4.2958 35 1 5.0089 3.1842 -2.5205 36 1 3.5568 1.5069 -1.3710 37 1 4.2700 0.2112 -2.3618 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:31 Heat of formation + Delta-G solvation = -25.652528 kcal Electronic energy + Delta-G solvation = -14734.174141 eV Core-core repulsion = 12510.174750 eV Total energy + Delta-G solvation = -2223.999392 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.82024 -35.64680 -32.72716 -31.85571 -30.23768 -27.07513 -26.19509 -25.01459 -22.08986 -20.78319 -19.83766 -19.46051 -16.63828 -15.16099 -15.00992 -14.50195 -14.27848 -14.01895 -13.65488 -13.06467 -12.60495 -12.42501 -12.24014 -12.18908 -11.67507 -11.59245 -11.25670 -11.14050 -10.82000 -10.71015 -10.53207 -10.26377 -10.10361 -9.99054 -9.70267 -9.39551 -9.06136 -8.52972 -7.34791 -6.00574 -3.97113 3.28043 3.37784 3.40353 4.43942 4.74419 4.87256 4.95610 5.26430 5.30076 5.32553 5.47725 5.62050 5.69261 5.75639 5.81967 5.88651 5.93828 6.02130 6.10336 6.19929 6.23817 6.28945 6.33529 6.41750 6.43624 6.50866 6.58438 6.69861 6.81377 6.89470 7.17917 7.78475 8.01108 8.42873 8.75932 9.11514 9.62860 11.13187 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039527 B = 0.008268 C = 0.007777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.210762 B = 3385.740883 C = 3599.680078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.183 3.817 3 H 0.033 0.967 4 C -0.495 4.495 5 H 0.081 0.919 6 C 0.066 3.934 7 N -0.903 5.903 8 Si 0.885 3.115 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.670 5.670 13 C 0.086 3.914 14 H 0.032 0.968 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.111 4.111 18 C -0.094 4.094 19 H 0.063 0.937 20 C -0.145 4.145 21 C -0.099 4.099 22 H 0.026 0.974 23 H 0.055 0.945 24 H 0.042 0.958 25 H 0.262 0.738 26 H 0.330 0.670 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.251 5.015 -15.534 16.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.074 3.926 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.099 0.901 6 C -0.135 4.135 7 N -0.542 5.542 8 Si 0.716 3.284 9 H -0.209 1.209 10 H -0.224 1.224 11 H -0.196 1.196 12 N -0.299 5.299 13 C -0.024 4.024 14 H 0.050 0.950 15 C -0.158 4.158 16 C -0.154 4.154 17 C -0.149 4.149 18 C -0.113 4.113 19 H 0.082 0.918 20 C -0.202 4.202 21 C -0.137 4.137 22 H 0.045 0.955 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.148 0.852 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.924 5.073 -15.149 16.003 hybrid contribution -1.700 0.970 0.112 1.960 sum -0.776 6.043 -15.037 16.225 Atomic orbital electron populations 1.22867 1.01688 1.01110 0.98462 1.19666 0.88356 0.95051 0.89547 0.94945 1.21018 1.30941 1.13618 0.87776 0.90070 1.24938 0.96024 0.96576 0.95922 1.69893 1.46125 1.40380 0.97788 0.86912 0.80659 0.84111 0.76760 1.20859 1.22446 1.19555 1.60610 1.56921 1.09402 1.03011 1.21467 0.96417 0.94310 0.90207 0.95010 1.21724 1.01599 0.98169 0.94304 1.21496 0.97551 0.98458 0.97881 1.21581 0.97463 0.98871 0.96982 1.21167 0.97457 0.97338 0.95356 0.91816 1.21806 0.97132 1.00027 1.01255 1.21564 0.97664 0.97608 0.96902 0.95537 0.92609 0.93938 0.92779 0.85249 0.91283 0.92590 0.92406 0.92371 0.92657 0.91984 0.92714 0.93288 0.92682 0.91824 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.02 8.55 37.16 0.32 -3.70 16 2 C 0.18 4.38 1.97 -68.86 -0.14 4.24 16 3 H 0.03 0.82 6.23 -51.93 -0.32 0.49 16 4 C -0.49 -14.19 9.42 -34.44 -0.32 -14.52 16 5 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 6 C 0.07 1.94 5.45 -17.82 -0.10 1.85 16 7 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 8 Si 0.88 22.35 24.31 -169.99 -4.13 18.22 16 9 H -0.28 -6.94 6.92 56.52 0.39 -6.55 16 10 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 11 H -0.27 -6.57 6.53 56.52 0.37 -6.20 16 12 N -0.67 -13.79 6.05 -100.95 -0.61 -14.40 16 13 C 0.09 1.47 2.28 -67.71 -0.15 1.32 16 14 H 0.03 0.57 7.21 -51.93 -0.37 0.20 16 15 C -0.12 -1.66 5.19 -26.73 -0.14 -1.80 16 16 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 17 C -0.11 -1.28 5.20 -26.73 -0.14 -1.42 16 18 C -0.09 -1.23 2.72 -90.62 -0.25 -1.48 16 19 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 20 C -0.14 -1.70 9.19 37.16 0.34 -1.36 16 21 C -0.10 -1.63 4.70 -26.73 -0.13 -1.75 16 22 H 0.03 0.50 7.50 -51.93 -0.39 0.11 16 23 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.04 0.98 3.45 -51.93 -0.18 0.80 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.33 6.40 8.06 -39.29 -0.32 6.09 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 1.18 7.50 -51.93 -0.39 0.79 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 279.47 15.07 4.21 4.21 Total: -1.00 -29.91 279.47 -7.26 -37.18 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.65 Total: 2.23 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -0.86 Total: -20.13 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.16 Total: -41.71 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.13 Total: 18.22 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.91 -7.26 -37.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.523 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds