Wall clock time and date at job start Sun Mar 29 2020 21:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47004 * 2 1 4 4 C 1.50700 * 109.47072 * 120.00196 * 2 1 3 5 5 H 1.07999 * 120.00055 * 119.99391 * 4 2 1 6 6 C 1.37872 * 119.99746 * 299.99616 * 4 2 1 7 7 N 1.31518 * 119.99879 * 179.97438 * 6 4 2 8 8 Si 1.86808 * 120.00286 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.47004 * 89.99996 * 8 6 4 10 10 H 1.48497 * 109.46952 * 209.99978 * 8 6 4 11 11 H 1.48493 * 109.46832 * 330.00120 * 8 6 4 12 12 N 1.46904 * 109.46784 * 240.00048 * 2 1 3 13 13 C 1.46898 * 111.00246 * 86.49164 * 12 2 1 14 14 H 1.09003 * 109.46827 * 325.76937 * 13 12 2 15 15 C 1.53000 * 109.47142 * 205.77442 * 13 12 2 16 16 C 1.52998 * 109.47213 * 179.97438 * 15 13 12 17 17 C 1.53010 * 109.46879 * 59.99940 * 16 15 13 18 18 C 1.52999 * 109.46876 * 300.00077 * 17 16 15 19 19 H 1.09000 * 109.47126 * 299.99753 * 18 17 16 20 20 C 1.53000 * 109.46962 * 179.97438 * 18 17 16 21 21 C 1.52998 * 109.47430 * 60.00260 * 18 17 16 22 22 H 1.09007 * 109.46738 * 65.84035 * 1 2 3 23 23 H 1.08991 * 109.47560 * 185.84389 * 1 2 3 24 24 H 1.08997 * 109.46570 * 305.84566 * 1 2 3 25 25 H 0.97008 * 119.99592 * 179.97438 * 7 6 4 26 26 H 1.00900 * 110.99747 * 322.53353 * 12 2 1 27 27 H 1.09000 * 109.46972 * 299.99988 * 15 13 12 28 28 H 1.09005 * 109.47210 * 59.99958 * 15 13 12 29 29 H 1.09001 * 109.47039 * 300.00445 * 16 15 13 30 30 H 1.08999 * 109.47520 * 179.97438 * 16 15 13 31 31 H 1.08997 * 109.46610 * 180.02562 * 17 16 15 32 32 H 1.09000 * 109.47041 * 59.99882 * 17 16 15 33 33 H 1.09003 * 109.47504 * 299.99989 * 20 18 17 34 34 H 1.09003 * 109.46980 * 59.99988 * 20 18 17 35 35 H 1.09003 * 109.47527 * 179.97438 * 20 18 17 36 36 H 1.09001 * 109.47112 * 180.02562 * 21 18 17 37 37 H 1.09000 * 109.47380 * 59.99649 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4826 7 7 2.1373 -0.8597 3.5565 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9761 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0197 -0.6925 -1.1995 13 6 2.1160 0.2307 -2.3380 14 1 1.3138 0.9664 -2.2781 15 6 1.9902 -0.5556 -3.6444 16 6 2.0899 0.4060 -4.8302 17 6 3.4417 1.1219 -4.7939 18 6 3.5674 1.9083 -3.4875 19 1 2.7651 2.6437 -3.4274 20 6 4.9194 2.6236 -3.4510 21 6 3.4677 0.9466 -2.3017 22 1 -0.3633 0.4206 -0.9377 23 1 -0.3634 -1.0222 0.1046 24 1 -0.3632 0.6018 0.8330 25 1 1.9032 -0.5279 4.4375 26 1 1.4352 -1.4838 -1.4240 27 1 2.7923 -1.2913 -3.7043 28 1 1.0270 -1.0653 -3.6704 29 1 1.2876 1.1414 -4.7700 30 1 2.0007 -0.1542 -5.7609 31 1 3.5125 1.8073 -5.6385 32 1 4.2440 0.3865 -4.8540 33 1 5.7215 1.8880 -3.5109 34 1 4.9909 3.3087 -4.2958 35 1 5.0089 3.1842 -2.5205 36 1 3.5568 1.5069 -1.3710 37 1 4.2700 0.2112 -2.3618 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:31 Heat of formation + Delta-G solvation = -45.548339 kcal Electronic energy + Delta-G solvation = -14735.036888 eV Core-core repulsion = 12510.174750 eV Total energy + Delta-G solvation = -2224.862139 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.05694 -37.27299 -34.55406 -33.22043 -31.78059 -28.58363 -27.29005 -27.05617 -23.36845 -22.01470 -21.58439 -20.59557 -18.75447 -16.94944 -16.49726 -15.80615 -15.50637 -15.41934 -15.04124 -14.73575 -14.11935 -14.04938 -13.82232 -13.24513 -13.19372 -13.02874 -12.68854 -12.52108 -12.34576 -12.06606 -11.87307 -11.76372 -11.54559 -11.33189 -11.29209 -10.95807 -10.82580 -10.75420 -9.00354 -8.28106 -6.29895 1.26816 1.32609 1.42571 2.30573 3.05940 3.39853 3.82985 3.89088 4.13198 4.27421 4.34741 4.44933 4.47548 4.52780 4.61174 4.67857 4.69159 4.75841 4.82637 4.90729 4.94655 5.03836 5.15113 5.20642 5.26479 5.34395 5.37456 5.40915 5.45895 5.50017 5.63616 5.69452 6.08803 6.72575 6.76439 6.82985 7.35268 8.89552 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039527 B = 0.008268 C = 0.007777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.210762 B = 3385.740883 C = 3599.680078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.190 3.810 3 H 0.022 0.978 4 C -0.502 4.502 5 H 0.034 0.966 6 C 0.008 3.992 7 N -0.951 5.951 8 Si 0.951 3.049 9 H -0.266 1.266 10 H -0.297 1.297 11 H -0.254 1.254 12 N -0.684 5.684 13 C 0.085 3.915 14 H 0.030 0.970 15 C -0.114 4.114 16 C -0.112 4.112 17 C -0.108 4.108 18 C -0.090 4.090 19 H 0.064 0.936 20 C -0.144 4.144 21 C -0.098 4.098 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.035 0.965 25 H 0.265 0.735 26 H 0.336 0.664 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.031 0.969 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.975 6.524 -18.047 19.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.080 3.920 3 H 0.040 0.960 4 C -0.541 4.541 5 H 0.053 0.947 6 C -0.188 4.188 7 N -0.592 5.592 8 Si 0.778 3.222 9 H -0.192 1.192 10 H -0.225 1.225 11 H -0.178 1.178 12 N -0.314 5.314 13 C -0.024 4.024 14 H 0.048 0.952 15 C -0.152 4.152 16 C -0.149 4.149 17 C -0.146 4.146 18 C -0.109 4.109 19 H 0.083 0.917 20 C -0.201 4.201 21 C -0.136 4.136 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.154 0.846 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.304 6.577 -17.696 18.882 hybrid contribution -1.218 0.409 0.881 1.558 sum -1.522 6.987 -16.816 18.273 Atomic orbital electron populations 1.22716 0.99537 1.01343 0.99887 1.19388 0.89847 0.93795 0.88983 0.96010 1.21309 1.30119 1.12424 0.90262 0.94720 1.25801 0.97605 1.00007 0.95401 1.70053 1.48102 1.42591 0.98502 0.85831 0.79209 0.80069 0.77083 1.19163 1.22453 1.17848 1.60467 1.57090 1.10335 1.03542 1.21583 0.96422 0.94012 0.90432 0.95245 1.21680 1.01923 0.98267 0.93347 1.21493 0.97726 0.98190 0.97540 1.21575 0.97435 0.99082 0.96477 1.21140 0.98277 0.96745 0.94731 0.91705 1.21797 0.96326 1.00236 1.01731 1.21547 0.97102 0.97728 0.97235 0.92247 0.92608 0.94643 0.92616 0.84605 0.91726 0.91748 0.91942 0.90131 0.90329 0.92018 0.92731 0.91035 0.93701 0.95012 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.39 8.55 71.98 0.62 -6.77 16 2 C 0.19 9.05 1.97 44.17 0.09 9.14 16 3 H 0.02 1.10 6.23 -2.39 -0.01 1.08 16 4 C -0.50 -29.70 9.42 25.60 0.24 -29.46 16 5 H 0.03 2.30 8.06 -2.91 -0.02 2.28 16 6 C 0.01 0.50 5.45 84.65 0.46 0.96 16 7 N -0.95 -61.01 13.96 21.45 0.30 -60.71 16 8 Si 0.95 46.06 24.31 68.60 1.67 47.73 16 9 H -0.27 -12.15 6.92 99.48 0.69 -11.46 16 10 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 11 H -0.25 -11.55 6.53 99.48 0.65 -10.90 16 12 N -0.68 -28.13 6.05 -473.29 -2.86 -30.99 16 13 C 0.09 2.80 2.28 44.92 0.10 2.90 16 14 H 0.03 0.99 7.21 -2.39 -0.02 0.98 16 15 C -0.11 -2.89 5.19 30.59 0.16 -2.73 16 16 C -0.11 -2.20 5.92 30.60 0.18 -2.01 16 17 C -0.11 -2.12 5.20 30.60 0.16 -1.96 16 18 C -0.09 -2.18 2.72 -10.79 -0.03 -2.21 16 19 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 20 C -0.14 -3.10 9.19 71.98 0.66 -2.44 16 21 C -0.10 -3.18 4.70 30.59 0.14 -3.04 16 22 H 0.06 2.09 7.50 -2.38 -0.02 2.07 16 23 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.03 1.53 3.45 -2.39 -0.01 1.52 16 25 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16 26 H 0.34 12.89 8.06 -89.69 -0.72 12.17 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.06 1.53 8.12 -2.38 -0.02 1.51 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.03 1.20 7.50 -2.39 -0.02 1.18 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -66.11 279.47 2.11 -64.01 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.22 Total: 17.59 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 2.78 Total: -37.63 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -2.56 Total: -91.70 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.67 Total: 47.73 kcal Total: -66.11 2.11 -64.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.460 kcal (2) G-P(sol) polarization free energy of solvation -66.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds