Wall clock time and date at job start Sun Mar 29 2020 21:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47034 * 2 1 4 4 C 1.50696 * 109.47334 * 120.00491 * 2 1 3 5 5 H 1.07994 * 119.99864 * 120.00014 * 4 2 1 6 6 C 1.37876 * 119.99850 * 300.00271 * 4 2 1 7 7 N 1.31519 * 120.00047 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00205 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47330 * 89.99559 * 8 6 4 10 10 H 1.48498 * 109.47444 * 209.99478 * 8 6 4 11 11 H 1.48503 * 109.46746 * 329.99856 * 8 6 4 12 12 N 1.46904 * 109.46972 * 240.00527 * 2 1 3 13 13 C 1.46896 * 111.00016 * 84.99766 * 12 2 1 14 14 C 1.53002 * 109.47181 * 179.97438 * 13 12 2 15 15 C 1.52997 * 109.46817 * 65.00049 * 14 13 12 16 16 C 1.52999 * 109.47317 * 179.97438 * 15 14 13 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 19 19 C 1.53000 * 109.47233 * 184.99855 * 14 13 12 20 20 H 1.08998 * 109.47125 * 299.99907 * 1 2 3 21 21 H 1.09004 * 109.47264 * 59.99732 * 1 2 3 22 22 H 1.09001 * 109.46952 * 179.97438 * 1 2 3 23 23 H 0.97004 * 119.99763 * 180.02562 * 7 6 4 24 24 H 1.00903 * 111.00052 * 321.04312 * 12 2 1 25 25 H 1.09008 * 109.47165 * 59.99956 * 13 12 2 26 26 H 1.08997 * 109.47437 * 299.99850 * 13 12 2 27 27 H 1.09002 * 109.47070 * 305.00230 * 14 13 12 28 28 H 1.08996 * 109.47853 * 300.00202 * 15 14 13 29 29 H 1.09002 * 109.47153 * 60.00231 * 15 14 13 30 30 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 31 31 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 32 32 H 1.09002 * 109.46935 * 299.99411 * 17 16 15 33 33 H 1.09001 * 109.46812 * 179.97438 * 17 16 15 34 34 H 1.08993 * 109.47194 * 179.97438 * 18 17 16 35 35 H 1.09002 * 109.46695 * 59.99734 * 18 17 16 36 36 H 1.08992 * 109.47399 * 300.00166 * 19 14 13 37 37 H 1.09004 * 109.46724 * 60.00652 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1311 6 6 1.6993 -0.2396 2.4826 7 7 0.9435 0.8300 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.6306 -0.5442 4.4118 10 1 1.3446 -0.9493 5.1122 11 1 2.4881 -2.5655 3.7119 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5962 -0.5326 -3.5743 15 6 1.5844 -1.6098 -3.9705 16 6 2.0978 -2.3648 -5.1982 17 6 2.2812 -1.3854 -6.3594 18 6 3.2929 -0.3082 -5.9632 19 6 2.7799 0.4464 -4.7356 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7095 1.1615 3.4845 24 1 1.4496 -1.4979 -1.4102 25 1 2.7588 1.0464 -2.1182 26 1 1.0871 0.6164 -2.5525 27 1 3.5520 -1.0008 -3.3390 28 1 1.4534 -2.3072 -3.1432 29 1 0.6286 -1.1416 -4.2058 30 1 1.3768 -3.1319 -5.4808 31 1 3.0537 -2.8329 -4.9634 32 1 1.3253 -0.9172 -6.5943 33 1 2.6474 -1.9232 -7.2339 34 1 3.4239 0.3891 -6.7905 35 1 4.2488 -0.7765 -5.7282 36 1 1.8242 0.9145 -4.9709 37 1 3.5008 1.2137 -4.4533 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871395.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:57 Heat of formation + Delta-G solvation = -37.015665 kcal Electronic energy + Delta-G solvation = -14382.870326 eV Core-core repulsion = 12158.378192 eV Total energy + Delta-G solvation = -2224.492134 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.64963 -35.72435 -32.84380 -30.95011 -30.57914 -27.75567 -25.11925 -24.09900 -22.43604 -20.75561 -19.99958 -19.47947 -16.31101 -15.29567 -14.78665 -14.66525 -14.07403 -14.00717 -13.37016 -13.11461 -12.92020 -12.21025 -11.99465 -11.88102 -11.51269 -11.12033 -10.99661 -10.96487 -10.88519 -10.68810 -10.45680 -10.21365 -10.11074 -9.99547 -9.78491 -9.60116 -8.91550 -8.31506 -7.13018 -5.93847 -3.96893 3.35788 3.41595 3.46054 4.47836 4.80418 4.86675 4.90671 5.23351 5.35687 5.37549 5.54633 5.64636 5.65687 5.66889 5.76872 5.77714 6.08291 6.10023 6.15285 6.24382 6.27094 6.38848 6.41091 6.48730 6.66800 6.75401 6.79065 6.89915 7.16560 7.45334 7.78985 7.94515 8.34489 8.62913 8.70394 9.10719 9.68392 11.13249 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058781 B = 0.006002 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.227871 B = 4663.897864 C = 4753.846689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.032 0.968 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.685 5.685 13 C 0.065 3.935 14 C -0.084 4.084 15 C -0.115 4.115 16 C -0.118 4.118 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.114 4.114 20 H 0.088 0.912 21 H 0.004 0.996 22 H 0.026 0.974 23 H 0.259 0.741 24 H 0.323 0.677 25 H 0.061 0.939 26 H 0.015 0.985 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.490 -2.717 -14.723 15.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.102 3.898 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.315 5.315 13 C -0.065 4.065 14 C -0.103 4.103 15 C -0.153 4.153 16 C -0.155 4.155 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.152 4.152 20 H 0.106 0.894 21 H 0.023 0.977 22 H 0.045 0.955 23 H 0.069 0.931 24 H 0.141 0.859 25 H 0.080 0.920 26 H 0.033 0.967 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.080 -2.517 -14.402 14.767 hybrid contribution -0.755 -0.233 0.695 1.052 sum 1.324 -2.749 -13.707 14.042 Atomic orbital electron populations 1.22420 1.00844 0.99070 1.00385 1.19166 0.89519 0.94399 0.86722 0.95035 1.21185 1.29983 1.12365 0.89684 0.91999 1.24962 0.95384 0.95253 0.99036 1.69894 1.37463 1.23294 1.23234 0.86510 0.78425 0.80022 0.82481 1.20792 1.21455 1.19958 1.60833 1.57988 1.09142 1.03543 1.21921 0.98125 0.95758 0.90714 1.21184 0.99560 0.95632 0.93939 1.21587 0.98405 0.97952 0.97337 1.21522 1.01094 0.97576 0.95340 1.21534 0.99354 0.97039 0.97676 1.21507 0.98786 0.97596 0.97624 1.21545 1.00947 0.97891 0.94783 0.89351 0.97696 0.95452 0.93145 0.85922 0.92016 0.96656 0.90621 0.91479 0.92618 0.92528 0.92062 0.92318 0.92624 0.92552 0.92107 0.92378 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.94 37.16 0.33 -3.82 16 2 C 0.21 5.43 2.57 -68.86 -0.18 5.25 16 3 H 0.03 0.90 7.80 -51.93 -0.40 0.49 16 4 C -0.49 -13.98 8.84 -34.44 -0.30 -14.29 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -26.21 11.32 55.43 0.63 -25.58 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.68 -14.94 6.23 -107.95 -0.67 -15.61 16 13 C 0.06 1.20 4.94 -3.83 -0.02 1.18 16 14 C -0.08 -1.25 2.40 -90.62 -0.22 -1.47 16 15 C -0.12 -1.57 4.97 -26.73 -0.13 -1.70 16 16 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 17 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 18 C -0.12 -1.27 5.92 -26.76 -0.16 -1.43 16 19 C -0.11 -1.43 5.20 -26.76 -0.14 -1.57 16 20 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 21 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16 22 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 24 H 0.32 6.70 6.72 -39.29 -0.26 6.44 16 25 H 0.06 1.19 8.06 -51.92 -0.42 0.77 16 26 H 0.02 0.29 7.44 -51.93 -0.39 -0.10 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 0.98 6.68 -51.93 -0.35 0.63 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 285.24 15.07 4.30 4.30 Total: -1.00 -28.54 285.24 -8.71 -37.25 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.72 Total: 2.14 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -1.23 Total: -19.31 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: -0.05 Total: -41.19 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.54 -8.71 -37.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871395.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.233 kcal (2) G-P(sol) polarization free energy of solvation -28.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds