Wall clock time and date at job start Sun Mar 29 2020 21:43:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08998 * 109.47034 * 2 1
4 4 C 1.50696 * 109.47334 * 120.00491 * 2 1 3
5 5 H 1.07994 * 119.99864 * 120.00014 * 4 2 1
6 6 C 1.37876 * 119.99850 * 300.00271 * 4 2 1
7 7 N 1.31519 * 120.00047 * 359.97438 * 6 4 2
8 8 Si 1.86798 * 120.00205 * 180.02562 * 6 4 2
9 9 H 1.48507 * 109.47330 * 89.99559 * 8 6 4
10 10 H 1.48498 * 109.47444 * 209.99478 * 8 6 4
11 11 H 1.48503 * 109.46746 * 329.99856 * 8 6 4
12 12 N 1.46904 * 109.46972 * 240.00527 * 2 1 3
13 13 C 1.46896 * 111.00016 * 84.99766 * 12 2 1
14 14 C 1.53002 * 109.47181 * 179.97438 * 13 12 2
15 15 C 1.52997 * 109.46817 * 65.00049 * 14 13 12
16 16 C 1.52999 * 109.47317 * 179.97438 * 15 14 13
17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14
18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 15
19 19 C 1.53000 * 109.47233 * 184.99855 * 14 13 12
20 20 H 1.08998 * 109.47125 * 299.99907 * 1 2 3
21 21 H 1.09004 * 109.47264 * 59.99732 * 1 2 3
22 22 H 1.09001 * 109.46952 * 179.97438 * 1 2 3
23 23 H 0.97004 * 119.99763 * 180.02562 * 7 6 4
24 24 H 1.00903 * 111.00052 * 321.04312 * 12 2 1
25 25 H 1.09008 * 109.47165 * 59.99956 * 13 12 2
26 26 H 1.08997 * 109.47437 * 299.99850 * 13 12 2
27 27 H 1.09002 * 109.47070 * 305.00230 * 14 13 12
28 28 H 1.08996 * 109.47853 * 300.00202 * 15 14 13
29 29 H 1.09002 * 109.47153 * 60.00231 * 15 14 13
30 30 H 1.09000 * 109.47486 * 180.02562 * 16 15 14
31 31 H 1.09002 * 109.46716 * 60.00091 * 16 15 14
32 32 H 1.09002 * 109.46935 * 299.99411 * 17 16 15
33 33 H 1.09001 * 109.46812 * 179.97438 * 17 16 15
34 34 H 1.08993 * 109.47194 * 179.97438 * 18 17 16
35 35 H 1.09002 * 109.46695 * 59.99734 * 18 17 16
36 36 H 1.08992 * 109.47399 * 300.00166 * 19 14 13
37 37 H 1.09004 * 109.46724 * 60.00652 * 19 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7105 1.2304
5 1 2.6533 -1.5885 1.1311
6 6 1.6993 -0.2396 2.4826
7 7 0.9435 0.8300 2.6034
8 14 2.3226 -1.1197 4.0078
9 1 3.6306 -0.5442 4.4118
10 1 1.3446 -0.9493 5.1122
11 1 2.4881 -2.5655 3.7119
12 7 2.0197 -0.6924 -1.1995
13 6 2.0824 0.2227 -2.3469
14 6 2.5962 -0.5326 -3.5743
15 6 1.5844 -1.6098 -3.9705
16 6 2.0978 -2.3648 -5.1982
17 6 2.2812 -1.3854 -6.3594
18 6 3.2929 -0.3082 -5.9632
19 6 2.7799 0.4464 -4.7356
20 1 -0.3633 0.5138 0.8900
21 1 -0.3634 0.5139 -0.8900
22 1 -0.3633 -1.0277 -0.0005
23 1 0.7095 1.1615 3.4845
24 1 1.4496 -1.4979 -1.4102
25 1 2.7588 1.0464 -2.1182
26 1 1.0871 0.6164 -2.5525
27 1 3.5520 -1.0008 -3.3390
28 1 1.4534 -2.3072 -3.1432
29 1 0.6286 -1.1416 -4.2058
30 1 1.3768 -3.1319 -5.4808
31 1 3.0537 -2.8329 -4.9634
32 1 1.3253 -0.9172 -6.5943
33 1 2.6474 -1.9232 -7.2339
34 1 3.4239 0.3891 -6.7905
35 1 4.2488 -0.7765 -5.7282
36 1 1.8242 0.9145 -4.9709
37 1 3.5008 1.2137 -4.4533
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000037871395.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:43:57
Heat of formation + Delta-G solvation = -37.015665 kcal
Electronic energy + Delta-G solvation = -14382.870326 eV
Core-core repulsion = 12158.378192 eV
Total energy + Delta-G solvation = -2224.492134 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 211.163 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-38.64963 -35.72435 -32.84380 -30.95011 -30.57914 -27.75567 -25.11925 -24.09900
-22.43604 -20.75561 -19.99958 -19.47947 -16.31101 -15.29567 -14.78665 -14.66525
-14.07403 -14.00717 -13.37016 -13.11461 -12.92020 -12.21025 -11.99465 -11.88102
-11.51269 -11.12033 -10.99661 -10.96487 -10.88519 -10.68810 -10.45680 -10.21365
-10.11074 -9.99547 -9.78491 -9.60116 -8.91550 -8.31506 -7.13018 -5.93847
-3.96893 3.35788 3.41595 3.46054 4.47836 4.80418 4.86675 4.90671
5.23351 5.35687 5.37549 5.54633 5.64636 5.65687 5.66889 5.76872
5.77714 6.08291 6.10023 6.15285 6.24382 6.27094 6.38848 6.41091
6.48730 6.66800 6.75401 6.79065 6.89915 7.16560 7.45334 7.78985
7.94515 8.34489 8.62913 8.70394 9.10719 9.68392 11.13249
Molecular weight = 211.16amu
Principal moments of inertia in cm(-1)
A = 0.058781 B = 0.006002 C = 0.005889
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 476.227871 B = 4663.897864 C = 4753.846689
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.210 3.790
3 H 0.032 0.968
4 C -0.493 4.493
5 H 0.062 0.938
6 C 0.054 3.946
7 N -0.899 5.899
8 Si 0.897 3.103
9 H -0.282 1.282
10 H -0.289 1.289
11 H -0.275 1.275
12 N -0.685 5.685
13 C 0.065 3.935
14 C -0.084 4.084
15 C -0.115 4.115
16 C -0.118 4.118
17 C -0.118 4.118
18 C -0.118 4.118
19 C -0.114 4.114
20 H 0.088 0.912
21 H 0.004 0.996
22 H 0.026 0.974
23 H 0.259 0.741
24 H 0.323 0.677
25 H 0.061 0.939
26 H 0.015 0.985
27 H 0.075 0.925
28 H 0.067 0.933
29 H 0.055 0.945
30 H 0.056 0.944
31 H 0.061 0.939
32 H 0.058 0.942
33 H 0.055 0.945
34 H 0.056 0.944
35 H 0.060 0.940
36 H 0.057 0.943
37 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.490 -2.717 -14.723 15.045
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C 0.102 3.898
3 H 0.050 0.950
4 C -0.532 4.532
5 H 0.080 0.920
6 C -0.146 4.146
7 N -0.539 5.539
8 Si 0.726 3.274
9 H -0.208 1.208
10 H -0.215 1.215
11 H -0.200 1.200
12 N -0.315 5.315
13 C -0.065 4.065
14 C -0.103 4.103
15 C -0.153 4.153
16 C -0.155 4.155
17 C -0.156 4.156
18 C -0.155 4.155
19 C -0.152 4.152
20 H 0.106 0.894
21 H 0.023 0.977
22 H 0.045 0.955
23 H 0.069 0.931
24 H 0.141 0.859
25 H 0.080 0.920
26 H 0.033 0.967
27 H 0.094 0.906
28 H 0.085 0.915
29 H 0.074 0.926
30 H 0.075 0.925
31 H 0.079 0.921
32 H 0.077 0.923
33 H 0.074 0.926
34 H 0.074 0.926
35 H 0.079 0.921
36 H 0.076 0.924
37 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 2.080 -2.517 -14.402 14.767
hybrid contribution -0.755 -0.233 0.695 1.052
sum 1.324 -2.749 -13.707 14.042
Atomic orbital electron populations
1.22420 1.00844 0.99070 1.00385 1.19166 0.89519 0.94399 0.86722
0.95035 1.21185 1.29983 1.12365 0.89684 0.91999 1.24962 0.95384
0.95253 0.99036 1.69894 1.37463 1.23294 1.23234 0.86510 0.78425
0.80022 0.82481 1.20792 1.21455 1.19958 1.60833 1.57988 1.09142
1.03543 1.21921 0.98125 0.95758 0.90714 1.21184 0.99560 0.95632
0.93939 1.21587 0.98405 0.97952 0.97337 1.21522 1.01094 0.97576
0.95340 1.21534 0.99354 0.97039 0.97676 1.21507 0.98786 0.97596
0.97624 1.21545 1.00947 0.97891 0.94783 0.89351 0.97696 0.95452
0.93145 0.85922 0.92016 0.96656 0.90621 0.91479 0.92618 0.92528
0.92062 0.92318 0.92624 0.92552 0.92107 0.92378 0.92105
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.15 8.94 37.16 0.33 -3.82 16
2 C 0.21 5.43 2.57 -68.86 -0.18 5.25 16
3 H 0.03 0.90 7.80 -51.93 -0.40 0.49 16
4 C -0.49 -13.98 8.84 -34.44 -0.30 -14.29 16
5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16
6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16
7 N -0.90 -26.21 11.32 55.43 0.63 -25.58 16
8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16
9 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16
10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16
12 N -0.68 -14.94 6.23 -107.95 -0.67 -15.61 16
13 C 0.06 1.20 4.94 -3.83 -0.02 1.18 16
14 C -0.08 -1.25 2.40 -90.62 -0.22 -1.47 16
15 C -0.12 -1.57 4.97 -26.73 -0.13 -1.70 16
16 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16
17 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16
18 C -0.12 -1.27 5.92 -26.76 -0.16 -1.43 16
19 C -0.11 -1.43 5.20 -26.76 -0.14 -1.57 16
20 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16
21 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16
22 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16
23 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16
24 H 0.32 6.70 6.72 -39.29 -0.26 6.44 16
25 H 0.06 1.19 8.06 -51.92 -0.42 0.77 16
26 H 0.02 0.29 7.44 -51.93 -0.39 -0.10 16
27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16
28 H 0.07 0.98 6.68 -51.93 -0.35 0.63 16
29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16
33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16
36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16
37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
LS Contribution 285.24 15.07 4.30 4.30
Total: -1.00 -28.54 285.24 -8.71 -37.25
By element:
Atomic # 1 Polarization: 8.85 SS G_CDS: -6.72 Total: 2.14 kcal
Atomic # 6 Polarization: -18.08 SS G_CDS: -1.23 Total: -19.31 kcal
Atomic # 7 Polarization: -41.14 SS G_CDS: -0.05 Total: -41.19 kcal
Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -28.54 -8.71 -37.25 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000037871395.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.233 kcal
(2) G-P(sol) polarization free energy of solvation -28.536 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.303 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.016 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds