Wall clock time and date at job start Sun Mar 29 2020 21:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47034 * 2 1 4 4 C 1.50696 * 109.47334 * 120.00491 * 2 1 3 5 5 H 1.07994 * 119.99864 * 120.00014 * 4 2 1 6 6 C 1.37876 * 119.99850 * 300.00271 * 4 2 1 7 7 N 1.31519 * 120.00047 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00205 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47330 * 89.99559 * 8 6 4 10 10 H 1.48498 * 109.47444 * 209.99478 * 8 6 4 11 11 H 1.48503 * 109.46746 * 329.99856 * 8 6 4 12 12 N 1.46904 * 109.46972 * 240.00527 * 2 1 3 13 13 C 1.46896 * 111.00016 * 84.99766 * 12 2 1 14 14 C 1.53002 * 109.47181 * 179.97438 * 13 12 2 15 15 C 1.52997 * 109.46817 * 65.00049 * 14 13 12 16 16 C 1.52999 * 109.47317 * 179.97438 * 15 14 13 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 19 19 C 1.53000 * 109.47233 * 184.99855 * 14 13 12 20 20 H 1.08998 * 109.47125 * 299.99907 * 1 2 3 21 21 H 1.09004 * 109.47264 * 59.99732 * 1 2 3 22 22 H 1.09001 * 109.46952 * 179.97438 * 1 2 3 23 23 H 0.97004 * 119.99763 * 180.02562 * 7 6 4 24 24 H 1.00903 * 111.00052 * 321.04312 * 12 2 1 25 25 H 1.09008 * 109.47165 * 59.99956 * 13 12 2 26 26 H 1.08997 * 109.47437 * 299.99850 * 13 12 2 27 27 H 1.09002 * 109.47070 * 305.00230 * 14 13 12 28 28 H 1.08996 * 109.47853 * 300.00202 * 15 14 13 29 29 H 1.09002 * 109.47153 * 60.00231 * 15 14 13 30 30 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 31 31 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 32 32 H 1.09002 * 109.46935 * 299.99411 * 17 16 15 33 33 H 1.09001 * 109.46812 * 179.97438 * 17 16 15 34 34 H 1.08993 * 109.47194 * 179.97438 * 18 17 16 35 35 H 1.09002 * 109.46695 * 59.99734 * 18 17 16 36 36 H 1.08992 * 109.47399 * 300.00166 * 19 14 13 37 37 H 1.09004 * 109.46724 * 60.00652 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1311 6 6 1.6993 -0.2396 2.4826 7 7 0.9435 0.8300 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.6306 -0.5442 4.4118 10 1 1.3446 -0.9493 5.1122 11 1 2.4881 -2.5655 3.7119 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5962 -0.5326 -3.5743 15 6 1.5844 -1.6098 -3.9705 16 6 2.0978 -2.3648 -5.1982 17 6 2.2812 -1.3854 -6.3594 18 6 3.2929 -0.3082 -5.9632 19 6 2.7799 0.4464 -4.7356 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7095 1.1615 3.4845 24 1 1.4496 -1.4979 -1.4102 25 1 2.7588 1.0464 -2.1182 26 1 1.0871 0.6164 -2.5525 27 1 3.5520 -1.0008 -3.3390 28 1 1.4534 -2.3072 -3.1432 29 1 0.6286 -1.1416 -4.2058 30 1 1.3768 -3.1319 -5.4808 31 1 3.0537 -2.8329 -4.9634 32 1 1.3253 -0.9172 -6.5943 33 1 2.6474 -1.9232 -7.2339 34 1 3.4239 0.3891 -6.7905 35 1 4.2488 -0.7765 -5.7282 36 1 1.8242 0.9145 -4.9709 37 1 3.5008 1.2137 -4.4533 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871395.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:56 Heat of formation + Delta-G solvation = -53.473929 kcal Electronic energy + Delta-G solvation = -14383.584010 eV Core-core repulsion = 12158.378192 eV Total energy + Delta-G solvation = -2225.205818 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.79523 -37.46608 -34.68786 -32.49073 -31.58779 -29.45134 -27.25701 -25.53664 -23.47873 -22.14576 -21.73948 -20.53936 -18.38369 -16.83325 -16.32825 -16.25449 -15.36302 -15.07873 -14.80639 -14.66657 -14.32922 -13.75217 -13.60438 -13.15577 -12.97911 -12.85802 -12.72545 -12.50150 -12.23316 -12.17248 -11.96431 -11.82240 -11.77437 -11.28420 -11.17309 -10.80732 -10.74677 -10.48829 -8.94266 -8.09839 -6.21548 1.43275 1.43689 1.54969 2.44284 3.18132 3.60499 3.85221 3.93562 3.97285 4.30892 4.46507 4.52173 4.60981 4.63140 4.69681 4.71493 4.77138 4.86415 4.87427 4.98179 5.06462 5.15624 5.20660 5.29768 5.32913 5.36858 5.42905 5.45682 5.54989 5.66116 5.68617 5.82205 6.27275 6.66266 6.85145 6.95095 7.48763 8.95893 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058781 B = 0.006002 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.227871 B = 4663.897864 C = 4753.846689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.213 3.787 3 H -0.002 1.002 4 C -0.516 4.516 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.963 3.037 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.268 1.268 12 N -0.688 5.688 13 C 0.067 3.933 14 C -0.076 4.076 15 C -0.114 4.114 16 C -0.115 4.115 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.111 4.111 20 H 0.062 0.938 21 H 0.022 0.978 22 H 0.032 0.968 23 H 0.261 0.739 24 H 0.331 0.669 25 H 0.047 0.953 26 H 0.014 0.986 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.742 -3.613 -15.856 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.104 3.896 3 H 0.016 0.984 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.789 3.211 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.193 1.193 12 N -0.318 5.318 13 C -0.063 4.063 14 C -0.095 4.095 15 C -0.152 4.152 16 C -0.152 4.152 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.149 4.149 20 H 0.080 0.920 21 H 0.041 0.959 22 H 0.051 0.949 23 H 0.070 0.930 24 H 0.149 0.851 25 H 0.066 0.934 26 H 0.032 0.968 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.333 -3.418 -15.556 16.097 hybrid contribution -0.835 0.082 1.024 1.324 sum 1.498 -3.336 -14.532 14.985 Atomic orbital electron populations 1.22222 1.00036 0.99187 0.99940 1.18950 0.90054 0.92614 0.87936 0.98433 1.21468 1.30422 1.12493 0.91116 0.92747 1.25760 0.95424 0.95912 1.01999 1.70021 1.38081 1.24338 1.24002 0.85475 0.77925 0.79033 0.78671 1.20323 1.20788 1.19295 1.60710 1.57794 1.09705 1.03612 1.21975 0.97887 0.95361 0.91061 1.21092 0.99145 0.96131 0.93082 1.21561 0.98091 0.97415 0.98086 1.21503 1.01233 0.97871 0.94612 1.21538 0.99441 0.96706 0.97721 1.21498 0.98786 0.97896 0.97030 1.21525 1.01212 0.97484 0.94712 0.91961 0.95854 0.94905 0.92987 0.85099 0.93428 0.96800 0.91620 0.92855 0.92597 0.91336 0.92164 0.92049 0.90813 0.90863 0.92092 0.92170 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.70 8.94 71.98 0.64 -7.06 16 2 C 0.21 11.25 2.57 44.17 0.11 11.37 16 3 H 0.00 -0.13 7.80 -2.39 -0.02 -0.15 16 4 C -0.52 -29.62 8.84 25.60 0.23 -29.39 16 5 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 6 C 0.01 0.39 5.30 84.65 0.45 0.84 16 7 N -0.92 -54.47 11.32 21.45 0.24 -54.23 16 8 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 9 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 N -0.69 -30.30 6.23 -495.44 -3.09 -33.39 16 13 C 0.07 2.48 4.94 86.30 0.43 2.90 16 14 C -0.08 -2.18 2.40 -10.79 -0.03 -2.21 16 15 C -0.11 -2.95 4.97 30.59 0.15 -2.80 16 16 C -0.11 -2.36 5.92 30.60 0.18 -2.18 16 17 C -0.12 -2.07 5.92 30.60 0.18 -1.89 16 18 C -0.11 -2.17 5.92 30.58 0.18 -1.99 16 19 C -0.11 -2.63 5.20 30.58 0.16 -2.47 16 20 H 0.06 3.45 6.07 -2.39 -0.01 3.43 16 21 H 0.02 1.03 7.45 -2.39 -0.02 1.01 16 22 H 0.03 1.55 8.13 -2.39 -0.02 1.53 16 23 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 24 H 0.33 13.71 6.72 -89.69 -0.60 13.11 16 25 H 0.05 1.87 8.06 -2.38 -0.02 1.86 16 26 H 0.01 0.52 7.44 -2.39 -0.02 0.50 16 27 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 1.52 6.68 -2.39 -0.02 1.50 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -60.55 285.24 2.28 -58.27 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.41 Total: 17.42 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 2.69 Total: -34.88 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -2.84 Total: -87.61 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -60.55 2.28 -58.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871395.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.794 kcal (2) G-P(sol) polarization free energy of solvation -60.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds