Wall clock time and date at job start Sun Mar 29 2020 21:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 5 5 H 1.08005 * 119.99854 * 239.99900 * 4 2 1 6 6 C 1.37878 * 120.00083 * 59.99957 * 4 2 1 7 7 N 1.31511 * 119.99935 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99899 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47177 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47276 * 120.00245 * 8 6 4 11 11 H 1.48507 * 109.47088 * 240.00288 * 8 6 4 12 12 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 13 13 C 1.46905 * 110.99870 * 274.99736 * 12 2 1 14 14 C 1.52993 * 109.47039 * 180.02562 * 13 12 2 15 15 C 1.53009 * 109.47237 * 295.00079 * 14 13 12 16 16 C 1.53002 * 109.47157 * 180.02562 * 15 14 13 17 17 C 1.52995 * 109.47430 * 59.99665 * 16 15 14 18 18 C 1.52999 * 109.47189 * 300.00246 * 17 16 15 19 19 C 1.52993 * 109.47215 * 60.00001 * 18 17 16 20 20 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 22 22 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 23 23 H 0.97003 * 119.99872 * 179.97438 * 7 6 4 24 24 H 1.00901 * 111.00067 * 38.94911 * 12 2 1 25 25 H 1.09001 * 109.46798 * 300.00327 * 13 12 2 26 26 H 1.08998 * 109.46961 * 60.00043 * 13 12 2 27 27 H 1.08999 * 109.47496 * 54.99761 * 14 13 12 28 28 H 1.08999 * 109.46618 * 300.00219 * 15 14 13 29 29 H 1.08995 * 109.46725 * 59.99765 * 15 14 13 30 30 H 1.08997 * 109.46499 * 299.99717 * 16 15 14 31 31 H 1.08995 * 109.46502 * 179.97438 * 16 15 14 32 32 H 1.08996 * 109.46901 * 180.02562 * 17 16 15 33 33 H 1.09001 * 109.46850 * 60.00205 * 17 16 15 34 34 H 1.09001 * 109.47191 * 299.99750 * 18 17 16 35 35 H 1.09000 * 109.47164 * 180.02562 * 18 17 16 36 36 H 1.09004 * 109.47135 * 179.97438 * 19 18 17 37 37 H 1.08999 * 109.47496 * 60.00262 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1659 -1.5866 -4.8160 11 1 3.1466 -0.1874 -4.8165 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5962 -0.5329 3.5741 15 6 1.5845 -1.6101 3.9704 16 6 2.0979 -2.3652 5.1981 17 6 2.2815 -1.3860 6.3592 18 6 3.2932 -0.3089 5.9630 19 6 2.7797 0.4462 4.7355 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 0.7095 1.1619 -3.4844 24 1 1.4495 -1.4979 1.4100 25 1 2.7589 1.0462 2.1182 26 1 1.0871 0.6163 2.5525 27 1 3.5520 -1.0012 3.3388 28 1 0.6287 -1.1419 4.2057 29 1 1.4535 -2.3074 3.1430 30 1 3.0538 -2.8333 4.9630 31 1 1.3769 -3.1322 5.4805 32 1 2.6477 -1.9239 7.2336 33 1 1.3256 -0.9179 6.5942 34 1 4.2491 -0.7770 5.7280 35 1 3.4242 0.3885 6.7904 36 1 3.5003 1.2140 4.4534 37 1 1.8238 0.9145 4.9704 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871396.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:58 Heat of formation + Delta-G solvation = -37.030593 kcal Electronic energy + Delta-G solvation = -14382.925879 eV Core-core repulsion = 12158.433097 eV Total energy + Delta-G solvation = -2224.492782 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.64822 -35.72495 -32.84545 -30.95152 -30.57692 -27.75645 -25.12104 -24.09959 -22.43681 -20.75537 -20.00096 -19.48017 -16.31292 -15.29646 -14.78803 -14.66422 -14.07209 -14.00830 -13.36963 -13.11357 -12.92163 -12.21283 -11.99543 -11.88220 -11.51526 -11.12241 -10.99698 -10.96354 -10.90622 -10.66385 -10.44820 -10.21551 -10.11617 -9.99676 -9.78547 -9.60275 -8.90351 -8.32227 -7.13004 -5.94103 -3.97046 3.34305 3.41771 3.47523 4.47810 4.80448 4.86676 4.90628 5.23344 5.35678 5.37419 5.54612 5.64612 5.65575 5.66895 5.76864 5.77709 6.08270 6.10005 6.15249 6.24367 6.27102 6.38833 6.41079 6.48704 6.66760 6.75301 6.79068 6.89813 7.16473 7.45241 7.78879 7.94661 8.34358 8.62832 8.70279 9.10926 9.68323 11.13057 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058782 B = 0.006002 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.221027 B = 4663.811423 C = 4753.882818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.209 3.791 3 H 0.032 0.968 4 C -0.492 4.492 5 H 0.062 0.938 6 C 0.053 3.947 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.685 5.685 13 C 0.065 3.935 14 C -0.084 4.084 15 C -0.115 4.115 16 C -0.118 4.118 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.114 4.114 20 H 0.026 0.974 21 H 0.004 0.996 22 H 0.088 0.912 23 H 0.258 0.742 24 H 0.323 0.677 25 H 0.061 0.939 26 H 0.015 0.985 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.502 -2.727 14.738 15.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.102 3.898 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.315 5.315 13 C -0.065 4.065 14 C -0.103 4.103 15 C -0.153 4.153 16 C -0.155 4.155 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.152 4.152 20 H 0.045 0.955 21 H 0.023 0.977 22 H 0.106 0.894 23 H 0.068 0.932 24 H 0.141 0.859 25 H 0.080 0.920 26 H 0.033 0.967 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.099 -2.528 14.419 14.789 hybrid contribution -0.774 -0.227 -0.701 1.069 sum 1.325 -2.755 13.718 14.055 Atomic orbital electron populations 1.22419 1.00845 0.99069 1.00386 1.19171 0.89519 0.94410 0.86743 0.95025 1.21226 1.29919 1.12319 0.89668 0.91944 1.24963 0.95409 0.95239 0.99049 1.69900 1.37554 1.23293 1.23135 0.86462 0.78480 0.79667 0.82901 1.19751 1.21244 1.21174 1.60835 1.57981 1.09142 1.03541 1.21921 0.98126 0.95760 0.90717 1.21185 0.99563 0.95630 0.93937 1.21590 0.98403 0.97951 0.97337 1.21519 1.01094 0.97577 0.95340 1.21531 0.99355 0.97040 0.97676 1.21515 0.98783 0.97591 0.97623 1.21554 1.00946 0.97882 0.94786 0.95453 0.97696 0.89353 0.93199 0.85924 0.92014 0.96656 0.90618 0.92618 0.91478 0.92060 0.92529 0.92623 0.92318 0.92103 0.92556 0.92107 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.94 37.16 0.33 -3.82 16 2 C 0.21 5.42 2.57 -68.87 -0.18 5.24 16 3 H 0.03 0.90 7.80 -51.93 -0.40 0.50 16 4 C -0.49 -13.95 8.84 -34.44 -0.30 -14.26 16 5 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -26.20 11.32 55.43 0.63 -25.58 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 N -0.68 -14.93 6.23 -107.95 -0.67 -15.61 16 13 C 0.06 1.19 4.94 -3.82 -0.02 1.18 16 14 C -0.08 -1.25 2.40 -90.62 -0.22 -1.46 16 15 C -0.12 -1.57 4.98 -26.73 -0.13 -1.70 16 16 C -0.12 -1.35 5.92 -26.73 -0.16 -1.50 16 17 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 18 C -0.12 -1.27 5.92 -26.74 -0.16 -1.43 16 19 C -0.11 -1.43 5.20 -26.73 -0.14 -1.57 16 20 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 21 H 0.00 0.09 7.45 -51.92 -0.39 -0.30 16 22 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.32 6.70 6.72 -39.29 -0.26 6.44 16 25 H 0.06 1.19 8.06 -51.93 -0.42 0.77 16 26 H 0.02 0.29 7.44 -51.93 -0.39 -0.10 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.98 6.68 -51.93 -0.35 0.63 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 285.24 15.07 4.30 4.30 Total: -1.00 -28.57 285.24 -8.71 -37.28 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.72 Total: 2.10 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -1.23 Total: -19.30 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: -0.05 Total: -41.18 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.57 -8.71 -37.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871396.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.247 kcal (2) G-P(sol) polarization free energy of solvation -28.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds