Wall clock time and date at job start Sun Mar 29 2020 21:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 5 5 H 1.08005 * 119.99854 * 239.99900 * 4 2 1 6 6 C 1.37878 * 120.00083 * 59.99957 * 4 2 1 7 7 N 1.31511 * 119.99935 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99899 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47177 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47276 * 120.00245 * 8 6 4 11 11 H 1.48507 * 109.47088 * 240.00288 * 8 6 4 12 12 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 13 13 C 1.46905 * 110.99870 * 274.99736 * 12 2 1 14 14 C 1.52993 * 109.47039 * 180.02562 * 13 12 2 15 15 C 1.53009 * 109.47237 * 295.00079 * 14 13 12 16 16 C 1.53002 * 109.47157 * 180.02562 * 15 14 13 17 17 C 1.52995 * 109.47430 * 59.99665 * 16 15 14 18 18 C 1.52999 * 109.47189 * 300.00246 * 17 16 15 19 19 C 1.52993 * 109.47215 * 60.00001 * 18 17 16 20 20 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 22 22 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 23 23 H 0.97003 * 119.99872 * 179.97438 * 7 6 4 24 24 H 1.00901 * 111.00067 * 38.94911 * 12 2 1 25 25 H 1.09001 * 109.46798 * 300.00327 * 13 12 2 26 26 H 1.08998 * 109.46961 * 60.00043 * 13 12 2 27 27 H 1.08999 * 109.47496 * 54.99761 * 14 13 12 28 28 H 1.08999 * 109.46618 * 300.00219 * 15 14 13 29 29 H 1.08995 * 109.46725 * 59.99765 * 15 14 13 30 30 H 1.08997 * 109.46499 * 299.99717 * 16 15 14 31 31 H 1.08995 * 109.46502 * 179.97438 * 16 15 14 32 32 H 1.08996 * 109.46901 * 180.02562 * 17 16 15 33 33 H 1.09001 * 109.46850 * 60.00205 * 17 16 15 34 34 H 1.09001 * 109.47191 * 299.99750 * 18 17 16 35 35 H 1.09000 * 109.47164 * 180.02562 * 18 17 16 36 36 H 1.09004 * 109.47135 * 179.97438 * 19 18 17 37 37 H 1.08999 * 109.47496 * 60.00262 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1659 -1.5866 -4.8160 11 1 3.1466 -0.1874 -4.8165 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5962 -0.5329 3.5741 15 6 1.5845 -1.6101 3.9704 16 6 2.0979 -2.3652 5.1981 17 6 2.2815 -1.3860 6.3592 18 6 3.2932 -0.3089 5.9630 19 6 2.7797 0.4462 4.7355 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 0.7095 1.1619 -3.4844 24 1 1.4495 -1.4979 1.4100 25 1 2.7589 1.0462 2.1182 26 1 1.0871 0.6163 2.5525 27 1 3.5520 -1.0012 3.3388 28 1 0.6287 -1.1419 4.2057 29 1 1.4535 -2.3074 3.1430 30 1 3.0538 -2.8333 4.9630 31 1 1.3769 -3.1322 5.4805 32 1 2.6477 -1.9239 7.2336 33 1 1.3256 -0.9179 6.5942 34 1 4.2491 -0.7770 5.7280 35 1 3.4242 0.3885 6.7904 36 1 3.5003 1.2140 4.4534 37 1 1.8238 0.9145 4.9704 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871396.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:58 Heat of formation + Delta-G solvation = -53.516180 kcal Electronic energy + Delta-G solvation = -14383.640748 eV Core-core repulsion = 12158.433097 eV Total energy + Delta-G solvation = -2225.207650 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.79376 -37.46646 -34.68947 -32.49217 -31.58512 -29.45186 -27.25914 -25.53686 -23.47931 -22.14624 -21.73938 -20.53991 -18.38678 -16.83534 -16.32832 -16.25311 -15.36133 -15.07994 -14.80472 -14.66999 -14.32948 -13.75349 -13.60928 -13.15933 -12.97832 -12.85399 -12.73416 -12.48404 -12.22673 -12.18564 -11.96521 -11.82791 -11.77482 -11.28375 -11.16309 -10.80727 -10.74303 -10.49563 -8.94233 -8.10098 -6.21694 1.42051 1.43337 1.56326 2.44193 3.17948 3.60535 3.85224 3.93541 3.97320 4.30916 4.46544 4.52210 4.60999 4.63147 4.69592 4.71450 4.77138 4.86409 4.87398 4.98201 5.06435 5.15626 5.20673 5.29788 5.32904 5.36876 5.42907 5.45696 5.54983 5.66165 5.68618 5.82270 6.27243 6.66160 6.85205 6.95203 7.48700 8.95862 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058782 B = 0.006002 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.221027 B = 4663.811423 C = 4753.882818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.213 3.787 3 H -0.002 1.002 4 C -0.515 4.515 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.963 3.037 9 H -0.269 1.269 10 H -0.279 1.279 11 H -0.281 1.281 12 N -0.688 5.688 13 C 0.067 3.933 14 C -0.076 4.076 15 C -0.114 4.114 16 C -0.115 4.115 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.111 4.111 20 H 0.032 0.968 21 H 0.022 0.978 22 H 0.062 0.938 23 H 0.261 0.739 24 H 0.331 0.669 25 H 0.047 0.953 26 H 0.014 0.986 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.738 -3.612 15.864 16.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.104 3.896 3 H 0.016 0.984 4 C -0.554 4.554 5 H 0.072 0.928 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.789 3.211 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.207 1.207 12 N -0.318 5.318 13 C -0.063 4.063 14 C -0.095 4.095 15 C -0.152 4.152 16 C -0.152 4.152 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.149 4.149 20 H 0.051 0.949 21 H 0.041 0.959 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.149 0.851 25 H 0.066 0.934 26 H 0.032 0.968 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.335 -3.418 15.566 16.107 hybrid contribution -0.849 0.084 -1.030 1.337 sum 1.486 -3.334 14.536 14.987 Atomic orbital electron populations 1.22221 1.00036 0.99190 0.99940 1.18954 0.90055 0.92626 0.87949 0.98416 1.21496 1.30351 1.12425 0.91105 0.92764 1.25759 0.95449 0.95900 1.02007 1.70024 1.38160 1.24333 1.23950 0.85426 0.78080 0.78562 0.79035 1.19299 1.20452 1.20703 1.60713 1.57790 1.09707 1.03612 1.21975 0.97889 0.95362 0.91060 1.21093 0.99145 0.96131 0.93082 1.21564 0.98091 0.97414 0.98086 1.21500 1.01233 0.97873 0.94613 1.21535 0.99443 0.96706 0.97720 1.21506 0.98782 0.97891 0.97030 1.21534 1.01213 0.97475 0.94714 0.94901 0.95852 0.91966 0.92989 0.85097 0.93425 0.96795 0.91623 0.92593 0.92853 0.92165 0.91335 0.90814 0.92047 0.92090 0.90868 0.92272 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.70 8.94 71.98 0.64 -7.06 16 2 C 0.21 11.23 2.57 44.17 0.11 11.35 16 3 H 0.00 -0.12 7.80 -2.39 -0.02 -0.14 16 4 C -0.52 -29.55 8.84 25.60 0.23 -29.32 16 5 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 6 C 0.01 0.38 5.30 84.66 0.45 0.83 16 7 N -0.92 -54.47 11.32 21.45 0.24 -54.23 16 8 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 12 N -0.69 -30.30 6.23 -495.45 -3.09 -33.39 16 13 C 0.07 2.48 4.94 86.30 0.43 2.90 16 14 C -0.08 -2.18 2.40 -10.79 -0.03 -2.21 16 15 C -0.11 -2.95 4.98 30.60 0.15 -2.80 16 16 C -0.11 -2.36 5.92 30.59 0.18 -2.18 16 17 C -0.12 -2.07 5.92 30.59 0.18 -1.89 16 18 C -0.11 -2.17 5.92 30.59 0.18 -1.99 16 19 C -0.11 -2.63 5.20 30.59 0.16 -2.47 16 20 H 0.03 1.55 8.13 -2.39 -0.02 1.53 16 21 H 0.02 1.03 7.45 -2.38 -0.02 1.01 16 22 H 0.06 3.44 6.07 -2.39 -0.01 3.43 16 23 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 24 H 0.33 13.71 6.72 -89.69 -0.60 13.10 16 25 H 0.05 1.88 8.06 -2.39 -0.02 1.86 16 26 H 0.01 0.52 7.44 -2.39 -0.02 0.50 16 27 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.52 6.68 -2.39 -0.02 1.50 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -60.60 285.24 2.28 -58.33 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.41 Total: 17.31 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 2.69 Total: -34.84 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -2.84 Total: -87.61 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -60.60 2.28 -58.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871396.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.809 kcal (2) G-P(sol) polarization free energy of solvation -60.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds