Wall clock time and date at job start Sun Mar 29 2020 21:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33640 * 122.75089 * 2 1 4 4 S 1.76195 * 107.92432 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28375 * 0.27465 * 4 3 2 6 6 C 1.50697 * 124.91613 * 179.84140 * 5 4 3 7 7 N 1.46900 * 109.46972 * 269.99908 * 6 5 4 8 8 C 1.46905 * 110.99656 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.46801 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00188 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99995 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00151 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00141 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47050 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47337 * 120.00000 * 13 11 9 16 16 H 1.48497 * 109.47479 * 240.00031 * 13 11 9 17 17 N 1.29028 * 110.16487 * 359.84202 * 5 4 3 18 18 H 1.09002 * 109.47152 * 269.73104 * 1 2 3 19 19 H 1.09001 * 109.46980 * 149.73205 * 1 2 3 20 20 H 1.09004 * 109.47113 * 29.73186 * 1 2 3 21 21 H 1.08001 * 126.03754 * 0.04014 * 3 2 1 22 22 H 1.09001 * 109.47564 * 30.00196 * 6 5 4 23 23 H 1.09005 * 109.47191 * 150.00231 * 6 5 4 24 24 H 1.00902 * 111.00219 * 303.95290 * 7 6 5 25 25 H 1.08997 * 109.47011 * 299.99990 * 8 7 6 26 26 H 1.09000 * 109.47281 * 60.00244 * 8 7 6 27 27 H 0.96994 * 120.00373 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 7 4.8002 -2.4921 -1.4013 8 6 5.7543 -3.6083 -1.4472 9 6 6.0540 -3.9542 -2.8830 10 1 5.5832 -3.4001 -3.6815 11 6 6.9300 -4.9775 -3.1772 12 7 7.5037 -5.6520 -2.2048 13 14 7.3021 -5.4058 -4.9569 14 1 6.5350 -4.5043 -5.8538 15 1 8.7553 -5.2385 -5.2130 16 1 6.9123 -6.8145 -5.2190 17 7 2.2199 -1.1083 -0.0065 18 1 -0.3633 -0.0048 1.0277 19 1 -0.3633 -0.8876 -0.5180 20 1 -0.3633 0.8924 -0.5097 21 1 1.8392 2.1308 0.0006 22 1 5.3966 -1.8274 0.5003 23 1 4.0439 -2.9843 0.4958 24 1 3.9618 -2.7120 -1.9178 25 1 6.6762 -3.3192 -0.9426 26 1 5.3231 -4.4756 -0.9473 27 1 8.1203 -6.3716 -2.4117 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038091596.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:03 Heat of formation + Delta-G solvation = 35.534959 kcal Electronic energy + Delta-G solvation = -11334.687168 eV Core-core repulsion = 9219.001836 eV Total energy + Delta-G solvation = -2115.685332 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.66819 -35.53420 -32.79174 -31.54427 -28.24520 -27.37157 -25.24250 -22.17190 -21.37864 -19.44487 -17.56901 -16.44169 -15.17761 -14.92495 -14.75683 -14.35895 -13.50099 -13.45252 -12.79732 -12.61358 -12.31712 -12.11983 -11.45956 -11.29147 -11.14462 -10.75646 -10.70281 -10.02624 -9.46538 -9.24893 -9.18676 -8.55357 -8.49594 -7.43437 -6.05561 -4.07531 0.88523 1.58707 1.98589 2.93301 3.30871 3.38047 3.43604 4.23323 4.43162 5.09030 5.21218 5.30355 5.31211 5.43109 5.54149 5.69818 5.72401 6.02073 6.03590 6.37813 7.13331 7.35012 7.72892 7.94497 8.05882 8.28227 8.50623 9.01057 9.57358 11.05628 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.055545 B = 0.005855 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.971946 B = 4781.281701 C = 4882.737971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.066 3.934 3 C -0.283 4.283 4 S 0.136 5.864 5 C 0.078 3.922 6 C 0.128 3.872 7 N -0.682 5.682 8 C 0.194 3.806 9 C -0.514 4.514 10 H 0.064 0.936 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.900 3.100 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.284 1.284 17 N -0.480 5.480 18 H 0.072 0.928 19 H 0.075 0.925 20 H 0.071 0.929 21 H 0.171 0.829 22 H 0.087 0.913 23 H 0.054 0.946 24 H 0.336 0.664 25 H 0.031 0.969 26 H -0.009 1.009 27 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.825 12.065 5.520 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.066 4.066 3 C -0.423 4.423 4 S 0.392 5.608 5 C -0.201 4.201 6 C -0.004 4.004 7 N -0.314 5.314 8 C 0.067 3.933 9 C -0.553 4.553 10 H 0.082 0.918 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.728 3.272 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.211 1.211 17 N -0.196 5.196 18 H 0.091 0.909 19 H 0.093 0.907 20 H 0.090 0.910 21 H 0.189 0.811 22 H 0.106 0.894 23 H 0.072 0.928 24 H 0.153 0.847 25 H 0.050 0.950 26 H 0.009 0.991 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.443 12.411 5.495 15.985 hybrid contribution -1.168 -0.994 -0.655 1.668 sum -9.611 11.417 4.840 15.689 Atomic orbital electron populations 1.20324 0.87536 1.03139 1.02593 1.20284 0.98094 0.86755 1.01508 1.26763 0.95947 1.03616 1.15941 1.83982 1.06417 1.03367 1.67071 1.27237 0.93669 0.98647 1.00539 1.20517 0.93961 0.91521 0.94431 1.60811 1.17547 1.45090 1.07966 1.19620 0.90435 0.85464 0.97744 1.21181 1.26073 1.16048 0.91964 0.91824 1.24984 0.95882 0.96015 0.97665 1.69965 1.29951 1.22257 1.31488 0.86403 0.78080 0.78102 0.84598 1.19633 1.20958 1.21053 1.66173 1.04741 1.31499 1.17157 0.90946 0.90652 0.91006 0.81134 0.89444 0.92832 0.84728 0.95049 0.99087 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.31 36.01 0.37 -0.42 15 2 C 0.07 0.94 6.74 -84.22 -0.57 0.37 15 3 C -0.28 -3.58 11.13 29.12 0.32 -3.25 15 4 S 0.14 1.92 23.18 -107.50 -2.49 -0.57 15 5 C 0.08 1.31 6.90 -13.46 -0.09 1.22 15 6 C 0.13 2.37 6.26 -4.98 -0.03 2.34 15 7 N -0.68 -14.98 6.48 -116.33 -0.75 -15.73 15 8 C 0.19 5.07 5.44 -4.97 -0.03 5.04 15 9 C -0.51 -14.63 9.32 -34.44 -0.32 -14.95 15 10 H 0.06 1.79 7.81 -52.49 -0.41 1.38 15 11 C 0.06 1.60 5.46 -17.82 -0.10 1.51 15 12 N -0.90 -26.73 13.29 55.43 0.74 -25.99 15 13 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 15 14 H -0.27 -6.47 7.11 56.52 0.40 -6.06 15 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 17 N -0.48 -8.19 10.53 -8.06 -0.08 -8.27 15 18 H 0.07 0.66 8.14 -51.93 -0.42 0.23 15 19 H 0.07 0.82 8.14 -51.93 -0.42 0.39 15 20 H 0.07 0.59 8.12 -51.93 -0.42 0.16 15 21 H 0.17 1.61 8.06 -52.49 -0.42 1.18 15 22 H 0.09 1.51 8.14 -51.93 -0.42 1.09 15 23 H 0.05 1.00 8.14 -51.93 -0.42 0.57 15 24 H 0.34 7.38 8.71 -39.29 -0.34 7.04 15 25 H 0.03 0.87 8.14 -51.93 -0.42 0.44 15 26 H -0.01 -0.24 8.14 -51.93 -0.42 -0.66 15 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 LS Contribution 255.76 15.07 3.85 3.85 Total: -1.00 -30.65 255.76 -7.47 -38.12 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -3.27 Total: 0.00 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -0.44 Total: -8.15 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.10 Total: -49.99 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.49 Total: -0.57 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.65 -7.47 -38.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038091596.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.656 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds