Wall clock time and date at job start Sun Mar 29 2020 21:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33640 * 122.75089 * 2 1 4 4 S 1.76195 * 107.92432 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28375 * 0.27465 * 4 3 2 6 6 C 1.50697 * 124.91613 * 179.84140 * 5 4 3 7 7 N 1.46900 * 109.46972 * 269.99908 * 6 5 4 8 8 C 1.46905 * 110.99656 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.46801 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00188 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99995 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00151 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00141 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47050 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47337 * 120.00000 * 13 11 9 16 16 H 1.48497 * 109.47479 * 240.00031 * 13 11 9 17 17 N 1.29028 * 110.16487 * 359.84202 * 5 4 3 18 18 H 1.09002 * 109.47152 * 269.73104 * 1 2 3 19 19 H 1.09001 * 109.46980 * 149.73205 * 1 2 3 20 20 H 1.09004 * 109.47113 * 29.73186 * 1 2 3 21 21 H 1.08001 * 126.03754 * 0.04014 * 3 2 1 22 22 H 1.09001 * 109.47564 * 30.00196 * 6 5 4 23 23 H 1.09005 * 109.47191 * 150.00231 * 6 5 4 24 24 H 1.00902 * 111.00219 * 303.95290 * 7 6 5 25 25 H 1.08997 * 109.47011 * 299.99990 * 8 7 6 26 26 H 1.09000 * 109.47281 * 60.00244 * 8 7 6 27 27 H 0.96994 * 120.00373 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 7 4.8002 -2.4921 -1.4013 8 6 5.7543 -3.6083 -1.4472 9 6 6.0540 -3.9542 -2.8830 10 1 5.5832 -3.4001 -3.6815 11 6 6.9300 -4.9775 -3.1772 12 7 7.5037 -5.6520 -2.2048 13 14 7.3021 -5.4058 -4.9569 14 1 6.5350 -4.5043 -5.8538 15 1 8.7553 -5.2385 -5.2130 16 1 6.9123 -6.8145 -5.2190 17 7 2.2199 -1.1083 -0.0065 18 1 -0.3633 -0.0048 1.0277 19 1 -0.3633 -0.8876 -0.5180 20 1 -0.3633 0.8924 -0.5097 21 1 1.8392 2.1308 0.0006 22 1 5.3966 -1.8274 0.5003 23 1 4.0439 -2.9843 0.4958 24 1 3.9618 -2.7120 -1.9178 25 1 6.6762 -3.3192 -0.9426 26 1 5.3231 -4.4756 -0.9473 27 1 8.1203 -6.3716 -2.4117 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038091596.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:03 Heat of formation + Delta-G solvation = 13.541154 kcal Electronic energy + Delta-G solvation = -11335.640891 eV Core-core repulsion = 9219.001836 eV Total energy + Delta-G solvation = -2116.639055 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.81660 -37.28523 -34.75376 -32.89001 -29.85277 -28.45606 -27.02833 -23.84620 -23.05547 -20.58214 -18.95746 -18.31252 -16.86940 -16.41806 -16.19901 -15.90626 -14.96582 -14.77189 -14.33033 -13.98004 -13.45820 -13.37394 -13.20342 -12.97180 -12.65486 -12.59312 -12.15983 -12.07715 -11.36790 -10.70144 -10.61090 -10.35812 -9.65075 -9.27422 -8.24083 -6.35110 -0.26217 0.46651 0.87276 1.41636 1.42005 1.56100 1.79748 2.39856 3.06065 3.09618 3.67562 3.95382 4.29452 4.36983 4.40169 4.53565 4.79597 4.87604 4.98265 5.04645 5.20887 5.39821 5.57442 5.95698 6.30161 6.54096 6.80879 6.83781 7.35305 8.87733 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.055545 B = 0.005855 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.971946 B = 4781.281701 C = 4882.737971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.040 3.960 3 C -0.261 4.261 4 S 0.164 5.836 5 C 0.040 3.960 6 C 0.133 3.867 7 N -0.678 5.678 8 C 0.208 3.792 9 C -0.537 4.537 10 H 0.063 0.937 11 C 0.003 3.997 12 N -0.932 5.932 13 Si 0.974 3.026 14 H -0.264 1.264 15 H -0.276 1.276 16 H -0.277 1.277 17 N -0.502 5.502 18 H 0.085 0.915 19 H 0.064 0.936 20 H 0.099 0.901 21 H 0.210 0.790 22 H 0.094 0.906 23 H 0.045 0.955 24 H 0.335 0.665 25 H 0.012 0.988 26 H -0.033 1.033 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.684 13.720 4.749 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 C -0.400 4.400 4 S 0.418 5.582 5 C -0.238 4.238 6 C 0.001 3.999 7 N -0.310 5.310 8 C 0.080 3.920 9 C -0.575 4.575 10 H 0.081 0.919 11 C -0.195 4.195 12 N -0.572 5.572 13 Si 0.798 3.202 14 H -0.188 1.188 15 H -0.202 1.202 16 H -0.203 1.203 17 N -0.219 5.219 18 H 0.104 0.896 19 H 0.084 0.916 20 H 0.117 0.883 21 H 0.227 0.773 22 H 0.112 0.888 23 H 0.063 0.937 24 H 0.151 0.849 25 H 0.030 0.970 26 H -0.016 1.016 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.316 14.078 4.735 17.533 hybrid contribution -0.959 -1.404 -0.343 1.735 sum -10.275 12.674 4.393 16.897 Atomic orbital electron populations 1.20431 0.85066 1.04023 1.03733 1.20853 0.99769 0.86377 1.02232 1.27263 0.94736 1.04997 1.13042 1.83824 1.07543 1.00807 1.65997 1.26792 0.93633 0.99652 1.03679 1.20406 0.94998 0.92351 0.92152 1.60671 1.17008 1.42817 1.10466 1.19277 0.90414 0.85794 0.96474 1.21513 1.26553 1.16577 0.92839 0.91917 1.25928 0.95447 0.95694 1.02463 1.70080 1.30441 1.22750 1.33896 0.85265 0.78097 0.78015 0.78792 1.18849 1.20160 1.20284 1.66157 1.05098 1.33657 1.17007 0.89620 0.91648 0.88269 0.77300 0.88750 0.93708 0.84863 0.97020 1.01577 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 10.31 71.24 0.73 -0.60 15 2 C 0.04 1.04 6.74 41.52 0.28 1.32 15 3 C -0.26 -5.76 11.13 66.78 0.74 -5.01 15 4 S 0.16 4.32 23.18 -56.49 -1.31 3.01 15 5 C 0.04 1.33 6.90 88.52 0.61 1.94 15 6 C 0.13 5.04 6.26 85.56 0.54 5.58 15 7 N -0.68 -30.53 6.48 -521.97 -3.38 -33.91 15 8 C 0.21 11.26 5.44 85.56 0.47 11.73 15 9 C -0.54 -30.99 9.32 25.60 0.24 -30.75 15 10 H 0.06 3.55 7.81 -2.91 -0.02 3.53 15 11 C 0.00 0.18 5.46 84.66 0.46 0.64 15 12 N -0.93 -56.23 13.29 21.45 0.28 -55.94 15 13 Si 0.97 44.56 29.54 68.60 2.03 46.59 15 14 H -0.26 -11.68 7.11 99.48 0.71 -10.97 15 15 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 16 H -0.28 -12.30 7.11 99.48 0.71 -11.60 15 17 N -0.50 -16.86 10.53 -179.40 -1.89 -18.75 15 18 H 0.09 1.32 8.14 -2.39 -0.02 1.30 15 19 H 0.06 1.32 8.14 -2.39 -0.02 1.30 15 20 H 0.10 1.24 8.12 -2.38 -0.02 1.22 15 21 H 0.21 2.88 8.06 -2.91 -0.02 2.85 15 22 H 0.09 3.35 8.14 -2.39 -0.02 3.33 15 23 H 0.04 1.75 8.14 -2.38 -0.02 1.73 15 24 H 0.33 15.09 8.71 -89.69 -0.78 14.31 15 25 H 0.01 0.67 8.14 -2.39 -0.02 0.65 15 26 H -0.03 -1.94 8.14 -2.39 -0.02 -1.96 15 27 H 0.27 14.99 8.31 -92.71 -0.77 14.22 15 Total: -1.00 -65.96 255.76 0.19 -65.78 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.39 Total: 8.40 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 4.07 Total: -15.17 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -4.99 Total: -108.61 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -1.31 Total: 3.01 kcal Total: -65.96 0.19 -65.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038091596.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.317 kcal (2) G-P(sol) polarization free energy of solvation -65.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds