Wall clock time and date at job start Sun Mar 29 2020 21:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47151 * 2 1 4 4 N 1.46901 * 109.47319 * 119.99836 * 2 1 3 5 5 C 1.46904 * 110.99651 * 53.28794 * 4 2 1 6 6 C 1.50700 * 109.46824 * 66.05167 * 5 4 2 7 7 H 1.08005 * 120.00292 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99925 * 179.97438 * 6 5 4 9 9 N 1.31507 * 119.99785 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00029 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47097 * 89.99799 * 10 8 6 12 12 H 1.48499 * 109.47279 * 210.00365 * 10 8 6 13 13 H 1.48500 * 109.46965 * 330.00245 * 10 8 6 14 14 C 1.46898 * 110.99731 * 289.34034 * 4 2 1 15 15 C 1.54965 * 110.92548 * 84.68226 * 14 4 2 16 16 C 1.54270 * 104.16092 * 156.29296 * 15 14 4 17 17 C 1.53869 * 106.63829 * 336.44471 * 16 15 14 18 18 C 1.54262 * 106.60122 * 359.97438 * 17 16 15 19 19 H 1.09000 * 109.47356 * 309.20854 * 1 2 3 20 20 H 1.09005 * 109.46866 * 69.21177 * 1 2 3 21 21 H 1.09006 * 109.46808 * 189.20551 * 1 2 3 22 22 H 1.08995 * 109.47642 * 240.00023 * 2 1 3 23 23 H 1.08993 * 109.47333 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47281 * 300.00021 * 3 2 1 25 25 H 1.09002 * 109.47165 * 59.99335 * 3 2 1 26 26 H 1.09004 * 109.46935 * 186.04733 * 5 4 2 27 27 H 1.08997 * 109.47629 * 306.04871 * 5 4 2 28 28 H 0.97006 * 120.00137 * 179.97438 * 9 8 6 29 29 H 1.08996 * 110.67695 * 321.37036 * 14 4 2 30 30 H 1.08996 * 110.48058 * 37.63627 * 15 14 4 31 31 H 1.08999 * 110.52811 * 274.97235 * 15 14 4 32 32 H 1.08995 * 110.02875 * 217.13372 * 16 15 14 33 33 H 1.08999 * 110.02865 * 95.75236 * 16 15 14 34 34 H 1.09001 * 110.03022 * 119.26174 * 17 16 15 35 35 H 1.09005 * 110.03055 * 240.63550 * 17 16 15 36 36 H 1.09007 * 110.48488 * 142.28892 * 18 17 16 37 37 H 1.09001 * 110.48276 * 264.93045 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4222 -2.0294 1.3162 6 6 1.9034 -2.8955 0.1807 7 1 2.5845 -2.4930 -0.5544 8 6 1.4740 -4.2019 0.0803 9 7 0.6442 -4.6919 0.9752 10 14 2.0698 -5.2753 -1.3276 11 1 3.3146 -5.9767 -0.9228 12 1 1.0250 -6.2755 -1.6641 13 1 2.3436 -4.4269 -2.5152 14 6 1.7670 0.1044 2.4073 15 6 0.3329 -0.1397 2.9414 16 6 0.4198 0.2270 4.4374 17 6 1.8962 0.0752 4.8432 18 6 2.6560 -0.3792 3.5799 19 1 -0.3634 0.6496 0.7963 20 1 -0.3633 0.3648 -0.9608 21 1 -0.3633 -1.0145 0.1644 22 1 1.8934 -0.5138 -0.8899 23 1 3.1299 1.4426 0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.7170 -2.4775 2.2652 27 1 0.3361 -1.9469 1.2753 28 1 0.3418 -5.6109 0.9044 29 1 1.9300 1.1640 2.2105 30 1 0.0540 -1.1865 2.8208 31 1 -0.3804 0.5073 2.4309 32 1 -0.2004 -0.4504 5.0244 33 1 0.0947 1.2563 4.5889 34 1 2.2879 1.0311 5.1910 35 1 1.9925 -0.6751 5.6280 36 1 3.6374 0.0931 3.5345 37 1 2.7528 -1.4647 3.5628 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039111957.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:52 Heat of formation + Delta-G solvation = -19.515276 kcal Electronic energy + Delta-G solvation = -15179.869726 eV Core-core repulsion = 12956.136466 eV Total energy + Delta-G solvation = -2223.733261 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.56102 -36.88395 -34.83025 -32.15756 -29.91245 -29.34425 -27.82295 -27.01304 -24.30129 -21.85035 -21.04729 -19.70117 -18.30223 -17.27352 -16.67916 -16.19667 -15.80878 -15.15058 -14.88908 -14.39358 -14.15305 -13.98486 -13.35300 -13.06117 -12.90154 -12.62317 -12.57248 -12.38282 -12.25525 -11.98686 -11.92925 -11.87377 -11.64467 -11.39684 -11.21331 -10.94241 -10.87446 -10.53640 -8.73250 -8.16204 -6.24488 1.38847 1.39973 1.50701 2.41040 3.15608 3.35060 3.85304 3.90068 4.02864 4.27344 4.39465 4.47995 4.60817 4.63551 4.69720 4.76996 4.82313 4.85833 4.90928 5.01032 5.09711 5.13099 5.15626 5.24340 5.26826 5.34188 5.42382 5.51089 5.54878 5.57744 5.66393 5.76447 6.17792 6.54695 6.85482 6.94891 7.44492 8.93860 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.030998 B = 0.010352 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.076534 B = 2704.186936 C = 3141.120818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.080 3.920 3 C -0.137 4.137 4 N -0.535 5.535 5 C 0.210 3.790 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.002 3.998 9 N -0.934 5.934 10 Si 0.961 3.039 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.266 1.266 14 C 0.070 3.930 15 C -0.163 4.163 16 C -0.116 4.116 17 C -0.116 4.116 18 C -0.116 4.116 19 H 0.066 0.934 20 H 0.061 0.939 21 H 0.035 0.965 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.067 0.933 26 H -0.005 1.005 27 H -0.010 1.010 28 H 0.262 0.738 29 H 0.106 0.894 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.632 12.252 3.073 12.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.028 4.028 3 C -0.195 4.195 4 N -0.257 5.257 5 C 0.084 3.916 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.195 4.195 9 N -0.575 5.575 10 Si 0.786 3.214 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.190 1.190 14 C -0.039 4.039 15 C -0.202 4.202 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.154 4.154 19 H 0.084 0.916 20 H 0.080 0.920 21 H 0.054 0.946 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.013 0.987 27 H 0.007 0.993 28 H 0.070 0.930 29 H 0.124 0.876 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.069 12.039 3.052 12.466 hybrid contribution -0.819 -1.280 -0.550 1.616 sum 0.250 10.759 2.502 11.049 Atomic orbital electron populations 1.22566 0.98190 1.01095 1.01923 1.21548 0.92640 0.95057 0.93565 1.21936 1.01358 0.93790 1.02376 1.62323 1.58393 1.03011 1.02002 1.19404 0.92150 0.85221 0.94859 1.21544 1.26766 0.96656 1.10775 0.92687 1.25817 0.95418 0.99393 0.98919 1.70082 1.34605 1.15788 1.37017 0.85509 0.77917 0.78395 0.79567 1.20114 1.20835 1.19033 1.22996 0.92826 0.98303 0.89779 1.23247 0.98950 1.00753 0.97254 1.22053 0.96875 1.01820 0.94694 1.22082 0.94787 1.01822 0.96669 1.22342 0.98896 0.99686 0.94457 0.91550 0.92000 0.94645 0.92613 0.92345 0.90993 0.91448 0.98699 0.99264 0.92957 0.87594 0.94015 0.91232 0.92741 0.89919 0.89597 0.92235 0.90928 0.94690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.60 8.03 71.98 0.58 -6.02 16 2 C 0.08 3.07 2.81 44.92 0.13 3.20 16 3 C -0.14 -3.88 8.70 71.98 0.63 -3.25 16 4 N -0.53 -23.10 4.57 -842.75 -3.85 -26.95 16 5 C 0.21 11.18 2.95 85.56 0.25 11.44 16 6 C -0.52 -30.04 8.60 25.60 0.22 -29.82 16 7 H 0.05 3.17 7.10 -2.91 -0.02 3.14 16 8 C 0.00 0.12 5.46 84.66 0.46 0.58 16 9 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 10 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 13 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 14 C 0.07 2.45 2.55 46.23 0.12 2.57 16 15 C -0.16 -5.69 4.81 31.70 0.15 -5.53 16 16 C -0.12 -3.23 6.80 31.32 0.21 -3.02 16 17 C -0.12 -3.12 6.80 31.32 0.21 -2.90 16 18 C -0.12 -3.93 6.38 31.67 0.20 -3.73 16 19 H 0.07 2.17 5.32 -2.39 -0.01 2.16 16 20 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 21 H 0.03 1.59 5.67 -2.38 -0.01 1.58 16 22 H 0.06 2.41 7.06 -2.39 -0.02 2.39 16 23 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.07 1.70 5.88 -2.39 -0.01 1.69 16 26 H -0.01 -0.30 6.51 -2.38 -0.02 -0.31 16 27 H -0.01 -0.57 4.21 -2.39 -0.01 -0.58 16 28 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 29 H 0.11 3.19 5.16 -2.39 -0.01 3.18 16 30 H 0.04 1.82 5.50 -2.39 -0.01 1.81 16 31 H 0.07 2.23 5.84 -2.39 -0.01 2.22 16 32 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.03 1.45 6.63 -2.39 -0.02 1.43 16 Total: -1.00 -64.03 270.94 2.66 -61.37 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 1.04 Total: 11.50 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 3.16 Total: -36.49 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -3.56 Total: -83.90 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -64.03 2.66 -61.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039111957.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.855 kcal (2) G-P(sol) polarization free energy of solvation -64.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds