Wall clock time and date at job start Sun Mar 29 2020 21:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00070 * 2 1 4 4 H 1.48504 * 109.47197 * 269.99800 * 3 2 1 5 5 H 1.48503 * 109.47303 * 29.99538 * 3 2 1 6 6 H 1.48498 * 109.47283 * 149.99942 * 3 2 1 7 7 C 1.37878 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99999 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99718 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.46618 * 180.02562 * 9 7 2 11 11 C 1.36133 * 120.17435 * 264.97492 * 10 9 7 12 12 C 1.39326 * 120.98585 * 180.02562 * 11 10 9 13 13 C 1.36126 * 120.99691 * 359.92630 * 12 11 10 14 14 C 1.40505 * 119.65059 * 0.05133 * 13 12 11 15 15 C 1.40550 * 121.29530 * 179.97438 * 14 13 12 16 16 C 1.36094 * 119.64902 * 180.02562 * 15 14 13 17 17 C 1.39379 * 120.99615 * 359.95635 * 16 15 14 18 18 C 1.36087 * 120.99503 * 0.04364 * 17 16 15 19 19 C 1.40506 * 120.17650 * 85.00517 * 10 9 7 20 20 H 0.97002 * 120.00117 * 0.02562 * 1 2 3 21 21 H 1.08993 * 109.47393 * 60.00651 * 9 7 2 22 22 H 1.09000 * 109.47287 * 300.00103 * 9 7 2 23 23 H 1.08001 * 119.50260 * 0.04987 * 11 10 9 24 24 H 1.08006 * 119.50203 * 179.97438 * 12 11 10 25 25 H 1.07998 * 120.17198 * 180.32175 * 13 12 11 26 26 H 1.07996 * 120.17506 * 0.02601 * 15 14 13 27 27 H 1.07998 * 119.49685 * 179.97438 * 16 15 14 28 28 H 1.08005 * 119.49899 * 180.02562 * 17 16 15 29 29 H 1.07997 * 120.17239 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.5966 -4.2316 -1.1729 12 6 3.5002 -5.2920 -1.1925 13 6 4.0442 -5.7708 -0.0402 14 6 3.6905 -5.1900 1.1893 15 6 4.2306 -5.6573 2.3998 16 6 3.8642 -5.0703 3.5717 17 6 2.9601 -4.0097 3.5912 18 6 2.4167 -3.5307 2.4392 19 6 2.7696 -4.1127 1.2095 20 1 -0.4850 0.8400 -0.0004 21 1 0.6240 -2.5568 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 2.1808 -3.8697 -2.1016 24 1 3.7737 -5.7403 -2.1363 25 1 4.7473 -6.5900 -0.0713 26 1 4.9328 -6.4779 2.4000 27 1 4.2805 -5.4316 4.5004 28 1 2.6865 -3.5615 4.5350 29 1 1.7178 -2.7080 2.4697 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039593499.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:44 Heat of formation + Delta-G solvation = 26.594383 kcal Electronic energy + Delta-G solvation = -13055.215567 eV Core-core repulsion = 10907.238935 eV Total energy + Delta-G solvation = -2147.976633 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.090 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.78885 -36.00315 -33.83445 -32.04314 -29.70097 -29.33832 -26.93791 -23.41988 -22.54188 -22.32421 -19.80617 -16.90391 -16.40568 -16.19553 -15.58392 -14.56342 -13.96813 -13.55345 -13.11799 -12.91781 -12.63685 -12.28915 -12.03657 -11.42327 -11.25669 -10.92836 -10.72302 -10.68218 -10.39095 -10.19460 -9.67846 -9.42899 -8.94881 -8.45452 -8.03149 -7.14281 -6.07436 -4.11958 1.18195 1.60156 2.70970 3.28731 3.35156 3.39734 3.60914 4.40460 4.78237 5.16002 5.26303 5.34618 5.41625 5.58083 5.61382 5.85657 5.99423 6.01725 6.11948 6.43590 6.57119 6.70072 6.83896 6.88675 7.00495 7.14530 7.19805 7.43107 7.50137 7.68535 7.79961 7.88139 8.26822 8.93198 9.52189 11.01760 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.032189 B = 0.009606 C = 0.008286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.655045 B = 2914.136032 C = 3378.582670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.057 0.943 9 C 0.046 3.954 10 C -0.012 4.012 11 C -0.149 4.149 12 C -0.099 4.099 13 C -0.149 4.149 14 C -0.047 4.047 15 C -0.127 4.127 16 C -0.116 4.116 17 C -0.148 4.148 18 C -0.070 4.070 19 C -0.055 4.055 20 H 0.263 0.737 21 H 0.031 0.969 22 H 0.033 0.967 23 H 0.118 0.882 24 H 0.112 0.888 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.953 -9.213 3.093 11.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.549 4.549 8 H 0.075 0.925 9 C 0.009 3.991 10 C -0.012 4.012 11 C -0.167 4.167 12 C -0.117 4.117 13 C -0.167 4.167 14 C -0.047 4.047 15 C -0.145 4.145 16 C -0.134 4.134 17 C -0.166 4.166 18 C -0.087 4.087 19 C -0.055 4.055 20 H 0.072 0.928 21 H 0.049 0.951 22 H 0.051 0.949 23 H 0.136 0.864 24 H 0.130 0.870 25 H 0.133 0.867 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.798 -9.092 3.098 11.219 hybrid contribution 0.528 0.958 -0.062 1.095 sum 6.326 -8.134 3.037 10.743 Atomic orbital electron populations 1.69952 1.06007 1.26895 1.50359 1.24989 0.94865 0.99203 0.95104 0.86546 0.79891 0.83133 0.78246 1.20549 1.21111 1.19769 1.21016 0.93044 0.89640 1.51180 0.92473 1.18409 0.92565 0.89500 0.98621 1.20632 0.95067 0.94330 0.91164 1.20714 1.00155 0.97425 0.98365 1.20790 0.96781 0.96586 0.97579 1.20728 1.02471 1.01526 0.92007 1.18087 0.96968 0.95932 0.93668 1.20851 1.00957 1.00602 0.92048 1.20732 0.98276 0.96850 0.97552 1.20767 0.99321 0.98167 0.98303 1.21398 0.98022 0.98060 0.91253 1.18117 0.97454 0.95756 0.94205 0.92778 0.95064 0.94913 0.86383 0.86993 0.86743 0.86558 0.86934 0.86648 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.23 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 15 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.27 -6.49 7.11 56.52 0.40 -6.08 15 7 C -0.51 -14.14 9.09 -34.44 -0.31 -14.45 15 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 15 9 C 0.05 1.17 4.50 -29.03 -0.13 1.03 15 10 C -0.01 -0.27 5.08 -104.52 -0.53 -0.80 15 11 C -0.15 -2.96 9.57 -39.93 -0.38 -3.34 15 12 C -0.10 -1.68 9.95 -39.94 -0.40 -2.08 15 13 C -0.15 -2.48 9.77 -39.49 -0.39 -2.87 15 14 C -0.05 -0.86 5.74 -106.83 -0.61 -1.47 15 15 C -0.13 -1.99 9.77 -39.48 -0.39 -2.38 15 16 C -0.12 -1.76 9.95 -39.93 -0.40 -2.15 15 17 C -0.15 -2.47 9.95 -39.93 -0.40 -2.87 15 18 C -0.07 -1.39 9.28 -39.49 -0.37 -1.75 15 19 C -0.06 -1.16 5.74 -106.83 -0.61 -1.77 15 20 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 21 H 0.03 0.83 8.04 -51.93 -0.42 0.42 15 22 H 0.03 0.86 6.70 -51.93 -0.35 0.52 15 23 H 0.12 2.25 8.05 -52.49 -0.42 1.82 15 24 H 0.11 1.54 8.06 -52.48 -0.42 1.11 15 25 H 0.11 1.54 8.06 -52.49 -0.42 1.11 15 26 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 27 H 0.11 1.34 8.06 -52.49 -0.42 0.92 15 28 H 0.12 1.64 8.06 -52.48 -0.42 1.22 15 29 H 0.14 2.96 6.49 -52.49 -0.34 2.62 15 LS Contribution 253.60 15.07 3.82 3.82 Total: -1.00 -29.44 253.60 -8.66 -38.10 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -3.18 Total: 0.23 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: -5.01 Total: -33.32 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.74 Total: -25.23 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.44 -8.66 -38.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039593499.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.695 kcal (2) G-P(sol) polarization free energy of solvation -29.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds