Wall clock time and date at job start Sun Mar 29 2020 21:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00070 * 2 1 4 4 H 1.48504 * 109.47197 * 269.99800 * 3 2 1 5 5 H 1.48503 * 109.47303 * 29.99538 * 3 2 1 6 6 H 1.48498 * 109.47283 * 149.99942 * 3 2 1 7 7 C 1.37878 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99999 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99718 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.46618 * 180.02562 * 9 7 2 11 11 C 1.36133 * 120.17435 * 264.97492 * 10 9 7 12 12 C 1.39326 * 120.98585 * 180.02562 * 11 10 9 13 13 C 1.36126 * 120.99691 * 359.92630 * 12 11 10 14 14 C 1.40505 * 119.65059 * 0.05133 * 13 12 11 15 15 C 1.40550 * 121.29530 * 179.97438 * 14 13 12 16 16 C 1.36094 * 119.64902 * 180.02562 * 15 14 13 17 17 C 1.39379 * 120.99615 * 359.95635 * 16 15 14 18 18 C 1.36087 * 120.99503 * 0.04364 * 17 16 15 19 19 C 1.40506 * 120.17650 * 85.00517 * 10 9 7 20 20 H 0.97002 * 120.00117 * 0.02562 * 1 2 3 21 21 H 1.08993 * 109.47393 * 60.00651 * 9 7 2 22 22 H 1.09000 * 109.47287 * 300.00103 * 9 7 2 23 23 H 1.08001 * 119.50260 * 0.04987 * 11 10 9 24 24 H 1.08006 * 119.50203 * 179.97438 * 12 11 10 25 25 H 1.07998 * 120.17198 * 180.32175 * 13 12 11 26 26 H 1.07996 * 120.17506 * 0.02601 * 15 14 13 27 27 H 1.07998 * 119.49685 * 179.97438 * 16 15 14 28 28 H 1.08005 * 119.49899 * 180.02562 * 17 16 15 29 29 H 1.07997 * 120.17239 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.5966 -4.2316 -1.1729 12 6 3.5002 -5.2920 -1.1925 13 6 4.0442 -5.7708 -0.0402 14 6 3.6905 -5.1900 1.1893 15 6 4.2306 -5.6573 2.3998 16 6 3.8642 -5.0703 3.5717 17 6 2.9601 -4.0097 3.5912 18 6 2.4167 -3.5307 2.4392 19 6 2.7696 -4.1127 1.2095 20 1 -0.4850 0.8400 -0.0004 21 1 0.6240 -2.5568 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 2.1808 -3.8697 -2.1016 24 1 3.7737 -5.7403 -2.1363 25 1 4.7473 -6.5900 -0.0713 26 1 4.9328 -6.4779 2.4000 27 1 4.2805 -5.4316 4.5004 28 1 2.6865 -3.5615 4.5350 29 1 1.7178 -2.7080 2.4697 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039593499.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:44 Heat of formation + Delta-G solvation = 11.404382 kcal Electronic energy + Delta-G solvation = -13055.874255 eV Core-core repulsion = 10907.238935 eV Total energy + Delta-G solvation = -2148.635320 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.19102 -37.40232 -35.66653 -33.84878 -31.08420 -30.87417 -28.74179 -25.32674 -23.98949 -23.69508 -21.34928 -18.54761 -18.24520 -17.65789 -16.99619 -16.49635 -15.34212 -14.98223 -14.75330 -14.33373 -14.22608 -13.99775 -13.59889 -13.13962 -13.00517 -12.56643 -12.54366 -12.16335 -12.12195 -11.66557 -11.58944 -11.17359 -10.63831 -10.51232 -9.40882 -8.62033 -8.19955 -6.36358 -0.20563 0.21867 1.28472 1.37366 1.37529 1.49409 2.22951 2.38880 3.07346 3.34648 3.87606 4.05865 4.14114 4.23907 4.36945 4.48540 4.62299 4.63780 4.74174 5.00083 5.10449 5.28116 5.31117 5.42966 5.49024 5.50437 5.65512 5.70990 5.75516 6.02460 6.09806 6.18794 6.29422 6.74747 7.31871 8.86173 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.032189 B = 0.009606 C = 0.008286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.655045 B = 2914.136032 C = 3378.582670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.523 4.523 8 H 0.048 0.952 9 C 0.059 3.941 10 C -0.059 4.059 11 C -0.150 4.150 12 C -0.109 4.109 13 C -0.128 4.128 14 C -0.068 4.068 15 C -0.114 4.114 16 C -0.117 4.117 17 C -0.132 4.132 18 C -0.115 4.115 19 C -0.076 4.076 20 H 0.266 0.734 21 H 0.002 0.998 22 H 0.006 0.994 23 H 0.113 0.887 24 H 0.150 0.850 25 H 0.161 0.839 26 H 0.160 0.840 27 H 0.157 0.843 28 H 0.138 0.862 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.884 -11.020 3.930 14.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.561 4.561 8 H 0.066 0.934 9 C 0.023 3.977 10 C -0.059 4.059 11 C -0.169 4.169 12 C -0.126 4.126 13 C -0.146 4.146 14 C -0.068 4.068 15 C -0.132 4.132 16 C -0.135 4.135 17 C -0.150 4.150 18 C -0.133 4.133 19 C -0.076 4.076 20 H 0.075 0.925 21 H 0.021 0.979 22 H 0.025 0.975 23 H 0.131 0.869 24 H 0.168 0.832 25 H 0.178 0.822 26 H 0.178 0.822 27 H 0.174 0.826 28 H 0.155 0.845 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.729 -10.907 3.932 14.513 hybrid contribution -0.354 1.401 -0.253 1.467 sum 8.375 -9.505 3.679 13.192 Atomic orbital electron populations 1.70072 1.07579 1.27986 1.51192 1.25875 0.95739 1.02907 0.94514 0.85474 0.78563 0.78562 0.78663 1.19551 1.20180 1.19322 1.21245 0.92697 0.91109 1.51075 0.93384 1.18073 0.92805 0.91048 0.95803 1.20380 0.96921 0.95193 0.93386 1.20876 1.00558 0.98204 0.97214 1.21092 0.96047 0.95682 0.99828 1.21269 1.01348 1.01222 0.90757 1.18484 0.96845 0.95495 0.96025 1.21351 1.00241 1.00782 0.90784 1.21189 0.97186 0.95616 0.99467 1.21117 0.98117 0.97916 0.97824 1.21239 1.00044 0.99129 0.92911 1.18280 0.98596 0.97184 0.93561 0.92480 0.97936 0.97536 0.86917 0.83191 0.82160 0.82212 0.82562 0.84455 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.60 13.29 21.45 0.28 -56.31 15 2 C 0.01 0.46 5.46 84.66 0.46 0.92 15 3 Si 0.96 45.12 29.54 68.60 2.03 47.14 15 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 15 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 15 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 7 C -0.52 -30.78 9.09 25.60 0.23 -30.54 15 8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 15 9 C 0.06 3.32 4.50 29.10 0.13 3.45 15 10 C -0.06 -2.78 5.08 -19.80 -0.10 -2.88 15 11 C -0.15 -6.15 9.57 22.04 0.21 -5.94 15 12 C -0.11 -3.44 9.95 22.04 0.22 -3.22 15 13 C -0.13 -3.77 9.77 22.33 0.22 -3.55 15 14 C -0.07 -2.36 5.74 -21.30 -0.12 -2.48 15 15 C -0.11 -3.06 9.77 22.33 0.22 -2.84 15 16 C -0.12 -3.06 9.95 22.05 0.22 -2.84 15 17 C -0.13 -4.26 9.95 22.04 0.22 -4.04 15 18 C -0.12 -4.82 9.28 22.33 0.21 -4.61 15 19 C -0.08 -3.28 5.74 -21.30 -0.12 -3.40 15 20 H 0.27 15.17 8.31 -92.71 -0.77 14.40 15 21 H 0.00 0.14 8.04 -2.39 -0.02 0.12 15 22 H 0.01 0.38 6.70 -2.39 -0.02 0.37 15 23 H 0.11 4.53 8.05 -2.91 -0.02 4.50 15 24 H 0.15 3.54 8.06 -2.91 -0.02 3.52 15 25 H 0.16 3.24 8.06 -2.91 -0.02 3.21 15 26 H 0.16 2.92 8.06 -2.91 -0.02 2.90 15 27 H 0.16 2.77 8.06 -2.91 -0.02 2.75 15 28 H 0.14 3.69 8.06 -2.91 -0.02 3.67 15 29 H 0.10 4.94 6.49 -2.91 -0.02 4.92 15 Total: -1.00 -68.27 253.60 5.44 -62.84 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 1.13 Total: 8.32 kcal Atomic # 6 Polarization: -63.98 SS G_CDS: 1.99 Total: -61.98 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.28 Total: -56.31 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -68.27 5.44 -62.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039593499.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.239 kcal (2) G-P(sol) polarization free energy of solvation -68.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds