Wall clock time and date at job start Sun Mar 29 2020 21:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47146 * 2 1 4 4 H 1.09001 * 110.53328 * 56.37711 * 3 2 1 5 5 N 1.47316 * 110.59895 * 293.55059 * 3 2 1 6 6 C 1.34530 * 106.61941 * 241.47237 * 5 3 2 7 7 O 1.21529 * 123.77235 * 179.97438 * 6 5 3 8 8 N 1.33794 * 112.45342 * 359.97438 * 6 5 3 9 9 C 1.46505 * 124.17349 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.46976 * 269.97679 * 9 8 6 11 11 H 1.07994 * 120.00024 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99552 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00688 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99833 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46894 * 90.00324 * 14 12 10 16 16 H 1.48495 * 109.47285 * 210.00338 * 14 12 10 17 17 H 1.48497 * 109.47243 * 330.00654 * 14 12 10 18 18 C 1.34760 * 111.64866 * 359.97438 * 8 6 5 19 19 O 1.21238 * 127.16227 * 179.97438 * 18 8 6 20 20 H 1.08997 * 109.47354 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46837 * 299.99862 * 1 2 3 22 22 H 1.08994 * 109.47675 * 59.99407 * 1 2 3 23 23 H 1.09004 * 109.46636 * 240.00597 * 2 1 3 24 24 H 1.08993 * 109.47143 * 120.00050 * 2 1 3 25 25 H 0.96998 * 126.68952 * 61.21033 * 5 3 2 26 26 H 1.09001 * 109.46886 * 29.97783 * 9 8 6 27 27 H 1.09001 * 109.47006 * 149.97336 * 9 8 6 28 28 H 0.96998 * 120.00395 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6346 1.9914 0.8500 5 7 1.6933 2.1148 -1.2641 6 6 2.8553 2.4588 -1.8483 7 8 2.9303 3.0352 -2.9155 8 7 3.9192 2.0954 -1.1228 9 6 5.3080 2.3438 -1.5175 10 6 5.8166 1.1782 -2.3260 11 1 5.1702 0.3364 -2.5255 12 6 7.1072 1.1865 -2.8109 13 7 7.8947 2.2113 -2.5675 14 14 7.7380 -0.2587 -3.8125 15 1 7.4600 -0.0221 -5.2520 16 1 9.2018 -0.4015 -3.6080 17 1 7.0534 -1.5013 -3.3739 18 6 3.5554 1.4737 0.0161 19 8 4.2878 1.0301 0.8744 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8899 25 1 0.8012 2.2746 -1.6099 26 1 5.3582 3.2520 -2.1180 27 1 5.9233 2.4635 -0.6257 28 1 8.8028 2.2170 -2.9084 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041580329.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:50 Heat of formation + Delta-G solvation = -54.954331 kcal Electronic energy + Delta-G solvation = -14284.337027 eV Core-core repulsion = 11721.974913 eV Total energy + Delta-G solvation = -2562.362113 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.68750 -37.85150 -36.00610 -34.74831 -32.90225 -31.84208 -27.97561 -26.75524 -23.44091 -22.80398 -21.19011 -19.77117 -17.48153 -16.90603 -16.12926 -15.70536 -15.00747 -14.92588 -14.47250 -13.82468 -13.79436 -13.48267 -12.94279 -12.32137 -12.11483 -11.65286 -11.52627 -11.11590 -11.08893 -10.74884 -10.43510 -10.02585 -9.89080 -9.46167 -9.12801 -8.56309 -8.50738 -6.13413 -4.18594 2.24662 2.99135 3.30227 3.35112 3.39211 3.66744 3.80178 4.38388 4.48842 4.73077 4.88893 5.22232 5.24716 5.29450 5.56073 5.79418 5.95041 5.99172 6.11487 6.60881 7.05628 7.18668 7.22966 7.79475 7.97819 8.03688 8.11473 8.74125 8.88170 9.46226 10.96077 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.037484 B = 0.009319 C = 0.008951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.804186 B = 3004.027684 C = 3127.490360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.091 3.909 4 H 0.117 0.883 5 N -0.737 5.737 6 C 0.699 3.301 7 O -0.543 6.543 8 N -0.557 5.557 9 C 0.248 3.752 10 C -0.534 4.534 11 H 0.059 0.941 12 C 0.065 3.935 13 N -0.891 5.891 14 Si 0.905 3.095 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.273 1.273 18 C 0.520 3.480 19 O -0.475 6.475 20 H 0.060 0.940 21 H 0.057 0.943 22 H 0.055 0.945 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.430 0.570 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.642 -2.583 5.505 14.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.018 4.018 4 H 0.135 0.865 5 N -0.403 5.403 6 C 0.400 3.600 7 O -0.416 6.416 8 N -0.300 5.300 9 C 0.131 3.869 10 C -0.572 4.572 11 H 0.078 0.922 12 C -0.138 4.138 13 N -0.529 5.529 14 Si 0.732 3.268 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.198 1.198 18 C 0.306 3.694 19 O -0.346 6.346 20 H 0.079 0.921 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.094 0.906 24 H 0.105 0.895 25 H 0.273 0.727 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.835 -2.406 5.340 14.109 hybrid contribution 0.014 -0.669 -0.728 0.989 sum -12.821 -3.075 4.613 13.968 Atomic orbital electron populations 1.21740 0.94667 1.02273 1.01886 1.21705 0.96696 0.93464 1.04325 1.22100 0.94242 0.96304 0.89186 0.86519 1.45609 1.07982 1.63669 1.23031 1.16003 0.81034 0.79341 0.83605 1.90954 1.85438 1.44992 1.20226 1.46823 1.10782 1.52309 1.20117 1.19602 0.71349 0.98708 0.97265 1.21246 0.98103 1.03883 1.34004 0.92228 1.24898 0.96287 0.96563 0.96022 1.69921 1.07862 1.29911 1.45240 0.86384 0.77936 0.82190 0.80283 1.20371 1.20908 1.19798 1.20637 0.89834 0.77104 0.81835 1.90739 1.59955 1.44711 1.39183 0.92053 0.92345 0.92597 0.90624 0.89505 0.72671 0.92825 0.92992 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.82 37.16 0.36 -0.83 15 2 C -0.12 -1.39 5.70 -26.73 -0.15 -1.54 15 3 C 0.09 1.22 3.68 -68.20 -0.25 0.97 15 4 H 0.12 1.21 8.14 -51.93 -0.42 0.79 15 5 N -0.74 -10.52 5.97 -59.19 -0.35 -10.87 15 6 C 0.70 14.39 8.62 -88.01 -0.76 13.63 15 7 O -0.54 -13.19 17.48 5.34 0.09 -13.10 15 8 N -0.56 -12.47 2.59 -122.02 -0.32 -12.79 15 9 C 0.25 6.67 5.45 -5.19 -0.03 6.64 15 10 C -0.53 -15.46 9.39 -34.44 -0.32 -15.79 15 11 H 0.06 1.72 7.81 -52.49 -0.41 1.31 15 12 C 0.07 1.88 5.46 -17.82 -0.10 1.79 15 13 N -0.89 -26.50 13.29 55.43 0.74 -25.76 15 14 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 15 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 18 C 0.52 10.16 7.65 -10.56 -0.08 10.08 15 19 O -0.48 -10.54 17.76 5.59 0.10 -10.44 15 20 H 0.06 0.45 8.14 -51.93 -0.42 0.03 15 21 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 15 22 H 0.05 0.43 7.43 -51.93 -0.39 0.04 15 23 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 24 H 0.09 0.95 8.14 -51.93 -0.42 0.53 15 25 H 0.43 4.70 8.42 -40.82 -0.34 4.35 15 26 H 0.05 1.53 7.86 -51.93 -0.41 1.12 15 27 H 0.05 1.46 8.00 -51.93 -0.42 1.04 15 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 15 LS Contribution 252.26 15.07 3.80 3.80 Total: -1.00 -33.63 252.26 -5.50 -39.13 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -3.21 Total: -1.93 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: -1.33 Total: 14.95 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.07 Total: -49.42 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: 0.19 Total: -23.54 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -33.63 -5.50 -39.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041580329.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.829 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds