Wall clock time and date at job start Sun Mar 29 2020 21:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47146 * 2 1 4 4 H 1.09001 * 110.53328 * 56.37711 * 3 2 1 5 5 N 1.47316 * 110.59895 * 293.55059 * 3 2 1 6 6 C 1.34530 * 106.61941 * 241.47237 * 5 3 2 7 7 O 1.21529 * 123.77235 * 179.97438 * 6 5 3 8 8 N 1.33794 * 112.45342 * 359.97438 * 6 5 3 9 9 C 1.46505 * 124.17349 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.46976 * 269.97679 * 9 8 6 11 11 H 1.07994 * 120.00024 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99552 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00688 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99833 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46894 * 90.00324 * 14 12 10 16 16 H 1.48495 * 109.47285 * 210.00338 * 14 12 10 17 17 H 1.48497 * 109.47243 * 330.00654 * 14 12 10 18 18 C 1.34760 * 111.64866 * 359.97438 * 8 6 5 19 19 O 1.21238 * 127.16227 * 179.97438 * 18 8 6 20 20 H 1.08997 * 109.47354 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46837 * 299.99862 * 1 2 3 22 22 H 1.08994 * 109.47675 * 59.99407 * 1 2 3 23 23 H 1.09004 * 109.46636 * 240.00597 * 2 1 3 24 24 H 1.08993 * 109.47143 * 120.00050 * 2 1 3 25 25 H 0.96998 * 126.68952 * 61.21033 * 5 3 2 26 26 H 1.09001 * 109.46886 * 29.97783 * 9 8 6 27 27 H 1.09001 * 109.47006 * 149.97336 * 9 8 6 28 28 H 0.96998 * 120.00395 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6346 1.9914 0.8500 5 7 1.6933 2.1148 -1.2641 6 6 2.8553 2.4588 -1.8483 7 8 2.9303 3.0352 -2.9155 8 7 3.9192 2.0954 -1.1228 9 6 5.3080 2.3438 -1.5175 10 6 5.8166 1.1782 -2.3260 11 1 5.1702 0.3364 -2.5255 12 6 7.1072 1.1865 -2.8109 13 7 7.8947 2.2113 -2.5675 14 14 7.7380 -0.2587 -3.8125 15 1 7.4600 -0.0221 -5.2520 16 1 9.2018 -0.4015 -3.6080 17 1 7.0534 -1.5013 -3.3739 18 6 3.5554 1.4737 0.0161 19 8 4.2878 1.0301 0.8744 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8899 25 1 0.8012 2.2746 -1.6099 26 1 5.3582 3.2520 -2.1180 27 1 5.9233 2.4635 -0.6257 28 1 8.8028 2.2170 -2.9084 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041580329.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:49 Heat of formation + Delta-G solvation = -80.568321 kcal Electronic energy + Delta-G solvation = -14285.447733 eV Core-core repulsion = 11721.974913 eV Total energy + Delta-G solvation = -2563.472819 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.25472 -39.52421 -37.46337 -36.52690 -34.79739 -33.16024 -29.91292 -28.04937 -25.47540 -24.16949 -22.36727 -21.42307 -19.11857 -18.82293 -17.74573 -17.33246 -16.83071 -16.42898 -16.01803 -15.46581 -15.11930 -14.90873 -14.46989 -13.83817 -13.70467 -13.19690 -13.10687 -12.70950 -12.43808 -12.39344 -11.99040 -11.90072 -11.71830 -11.06945 -10.72068 -10.63452 -10.33012 -8.34215 -6.49390 0.68875 1.34765 1.38512 1.43334 1.51436 2.11624 2.32986 2.37000 2.98060 3.07682 3.70849 3.93691 4.36650 4.44857 4.51065 4.68351 4.84880 4.96836 5.06048 5.16280 5.20682 5.43533 5.55282 5.82876 5.91007 6.34480 6.49137 6.59501 7.16186 7.28581 8.75814 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.037484 B = 0.009319 C = 0.008951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.804186 B = 3004.027684 C = 3127.490360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 C 0.110 3.890 4 H 0.167 0.833 5 N -0.701 5.701 6 C 0.694 3.306 7 O -0.589 6.589 8 N -0.574 5.574 9 C 0.262 3.738 10 C -0.557 4.557 11 H 0.054 0.946 12 C 0.013 3.987 13 N -0.922 5.922 14 Si 0.976 3.024 15 H -0.270 1.270 16 H -0.271 1.271 17 H -0.267 1.267 18 C 0.508 3.492 19 O -0.508 6.508 20 H 0.070 0.930 21 H 0.079 0.921 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.093 0.907 25 H 0.451 0.549 26 H 0.025 0.975 27 H 0.030 0.970 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.633 -3.895 5.927 17.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.158 4.158 3 C 0.003 3.997 4 H 0.184 0.816 5 N -0.368 5.368 6 C 0.395 3.605 7 O -0.466 6.466 8 N -0.318 5.318 9 C 0.143 3.857 10 C -0.595 4.595 11 H 0.072 0.928 12 C -0.187 4.187 13 N -0.561 5.561 14 Si 0.799 3.201 15 H -0.195 1.195 16 H -0.196 1.196 17 H -0.191 1.191 18 C 0.297 3.703 19 O -0.381 6.381 20 H 0.089 0.911 21 H 0.098 0.902 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.111 0.889 25 H 0.299 0.701 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.911 -3.731 5.798 16.428 hybrid contribution 0.620 -0.239 -0.791 1.033 sum -14.291 -3.970 5.007 15.655 Atomic orbital electron populations 1.21731 0.91421 1.03495 1.03293 1.21752 0.99266 0.91073 1.03729 1.22324 0.88977 0.98617 0.89825 0.81613 1.45388 1.06983 1.61860 1.22586 1.16124 0.82077 0.79187 0.83096 1.90917 1.86217 1.47193 1.22243 1.46774 1.09794 1.53428 1.21782 1.19006 0.74045 0.97146 0.95531 1.21502 0.98764 1.04301 1.34966 0.92804 1.25877 0.96341 0.99558 0.96929 1.70028 1.08357 1.31761 1.45927 0.85296 0.77759 0.78466 0.78603 1.19532 1.19600 1.19090 1.21710 0.92748 0.75589 0.80223 1.90711 1.61732 1.45766 1.39927 0.91062 0.90178 0.91946 0.92714 0.88851 0.70105 0.95675 0.95243 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.82 71.98 0.71 -0.92 15 2 C -0.12 -2.31 5.70 30.59 0.17 -2.14 15 3 C 0.11 2.62 3.68 44.37 0.16 2.79 15 4 H 0.17 2.57 8.14 -2.39 -0.02 2.55 15 5 N -0.70 -18.28 5.97 -459.60 -2.74 -21.03 15 6 C 0.69 28.56 8.62 179.44 1.55 30.11 15 7 O -0.59 -29.20 17.48 -3.81 -0.07 -29.27 15 8 N -0.57 -26.30 2.59 -777.21 -2.01 -28.31 15 9 C 0.26 14.83 5.45 85.63 0.47 15.30 15 10 C -0.56 -33.27 9.39 25.60 0.24 -33.03 15 11 H 0.05 3.19 7.81 -2.91 -0.02 3.16 15 12 C 0.01 0.77 5.46 84.65 0.46 1.24 15 13 N -0.92 -56.09 13.29 21.45 0.28 -55.81 15 14 Si 0.98 45.39 29.54 68.60 2.03 47.42 15 15 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 16 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 17 H -0.27 -12.01 7.11 99.48 0.71 -11.31 15 18 C 0.51 19.70 7.65 87.94 0.67 20.37 15 19 O -0.51 -22.77 17.76 -2.90 -0.05 -22.82 15 20 H 0.07 0.74 8.14 -2.39 -0.02 0.72 15 21 H 0.08 0.63 8.14 -2.39 -0.02 0.61 15 22 H 0.06 0.66 7.43 -2.39 -0.02 0.64 15 23 H 0.05 1.31 8.14 -2.38 -0.02 1.29 15 24 H 0.09 1.75 8.14 -2.39 -0.02 1.74 15 25 H 0.45 8.24 8.42 -92.71 -0.78 7.46 15 26 H 0.03 1.53 7.86 -2.39 -0.02 1.51 15 27 H 0.03 1.76 8.00 -2.39 -0.02 1.74 15 28 H 0.27 15.37 8.31 -92.71 -0.77 14.60 15 Total: -1.00 -76.44 252.26 2.27 -74.17 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: 0.39 Total: 1.95 kcal Atomic # 6 Polarization: 29.27 SS G_CDS: 4.43 Total: 33.70 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -4.47 Total: -105.15 kcal Atomic # 8 Polarization: -51.97 SS G_CDS: -0.12 Total: -52.09 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -76.44 2.27 -74.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041580329.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.397 kcal (2) G-P(sol) polarization free energy of solvation -76.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds