Wall clock time and date at job start Sun Mar 29 2020 21:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1 5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47299 * 179.97438 * 11 10 9 13 13 C 1.34769 * 124.17896 * 269.72507 * 12 11 10 14 14 O 1.21238 * 127.15265 * 359.97438 * 13 12 11 15 15 C 1.51578 * 105.68864 * 179.97438 * 13 12 11 16 16 N 1.47311 * 103.59031 * 0.31864 * 15 13 12 17 17 C 1.33788 * 124.17730 * 90.01712 * 12 11 10 18 18 O 1.21541 * 123.77646 * 359.96906 * 17 12 11 19 19 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 21 21 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 22 22 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 23 23 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 24 24 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 25 25 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 26 26 H 1.08993 * 110.76660 * 241.71734 * 15 13 12 27 27 H 1.09001 * 110.56632 * 118.82471 * 15 13 12 28 28 H 0.97004 * 126.69153 * 179.77084 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0018 13 6 2.9202 -6.6790 -1.1170 14 8 2.6635 -6.3873 -2.2654 15 6 3.8566 -7.7700 -0.6369 16 7 3.7745 -7.6755 0.8309 17 6 2.9206 -6.6727 1.1047 18 8 2.6243 -6.3263 2.2315 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5568 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 2.8720 -3.6043 -0.8905 23 1 2.8720 -3.6043 0.8894 24 1 0.8535 -5.0451 0.8886 25 1 0.8539 -5.0446 -0.8913 26 1 4.8751 -7.5823 -0.9768 27 1 3.5135 -8.7467 -0.9781 28 1 4.2447 -8.2284 1.4745 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042214123.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:42 Heat of formation + Delta-G solvation = -55.638747 kcal Electronic energy + Delta-G solvation = -13792.985377 eV Core-core repulsion = 11230.593585 eV Total energy + Delta-G solvation = -2562.391792 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.18871 -38.46024 -36.01720 -35.51776 -33.36165 -31.30673 -27.93042 -26.93341 -23.75024 -22.75477 -20.78572 -19.98570 -17.98667 -16.97659 -16.66326 -16.21377 -15.32879 -15.11636 -14.43710 -14.13822 -13.99796 -13.93976 -13.60907 -12.43163 -12.10909 -11.48293 -11.06711 -10.89017 -10.81353 -10.54876 -10.19538 -9.81163 -9.75331 -9.59928 -9.29156 -8.99815 -8.32993 -5.98181 -4.00514 1.67397 2.32245 3.10054 3.14422 3.35990 3.39761 3.42746 3.99187 4.48232 4.76106 4.83716 5.24541 5.37837 5.65834 5.72652 5.76225 6.02672 6.52882 6.68151 6.75905 7.02457 7.17336 7.44806 7.65672 7.79247 8.00087 8.17404 8.42731 9.05013 9.63189 11.13249 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.049310 B = 0.006464 C = 0.006240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.699313 B = 4330.810035 C = 4486.247404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.123 4.123 11 C 0.115 3.885 12 N -0.572 5.572 13 C 0.517 3.483 14 O -0.469 6.469 15 C 0.063 3.937 16 N -0.735 5.735 17 C 0.699 3.301 18 O -0.539 6.539 19 H 0.261 0.739 20 H 0.020 0.980 21 H 0.020 0.980 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.264 -16.698 -0.795 18.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.161 4.161 11 C -0.004 4.004 12 N -0.317 5.317 13 C 0.303 3.697 14 O -0.339 6.339 15 C -0.065 4.065 16 N -0.401 5.401 17 C 0.399 3.601 18 O -0.412 6.412 19 H 0.071 0.929 20 H 0.038 0.962 21 H 0.039 0.961 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 6.709 -16.129 -0.842 17.489 hybrid contribution 0.725 0.670 0.249 1.018 sum 7.434 -15.460 -0.593 17.165 Atomic orbital electron populations 1.69949 1.06032 1.26768 1.50690 1.25011 0.94868 0.99248 0.95260 0.86630 0.79568 0.83035 0.78612 1.20241 1.21256 1.20236 1.21150 0.92981 0.90905 1.50836 0.92760 1.19032 0.93800 0.90831 0.97584 1.22002 0.99951 0.93095 1.01099 1.22098 0.90269 0.83797 1.04263 1.46629 1.43598 1.34025 1.07494 1.20854 0.80860 0.82845 0.85110 1.90829 1.59737 1.65327 1.18012 1.22439 1.02146 1.00447 0.81498 1.45441 1.49358 1.37719 1.07580 1.15949 0.79527 0.80009 0.84582 1.91028 1.63133 1.66479 1.20527 0.92901 0.96208 0.96135 0.92867 0.92598 0.88887 0.89042 0.86199 0.86299 0.71825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.52 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 15 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 15 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 15 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 15 9 C 0.03 0.66 4.97 -27.88 -0.14 0.52 15 10 C -0.12 -2.65 5.48 -26.73 -0.15 -2.79 15 11 C 0.12 2.06 5.70 -4.04 -0.02 2.04 15 12 N -0.57 -8.76 2.60 -120.73 -0.31 -9.08 15 13 C 0.52 6.87 8.31 -10.56 -0.09 6.78 15 14 O -0.47 -7.72 17.75 5.59 0.10 -7.62 15 15 C 0.06 0.47 7.97 -4.32 -0.03 0.44 15 16 N -0.74 -6.70 6.58 -65.74 -0.43 -7.14 15 17 C 0.70 10.26 8.62 -88.02 -0.76 9.50 15 18 O -0.54 -10.06 17.48 5.33 0.09 -9.97 15 19 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 20 H 0.02 0.54 8.14 -51.93 -0.42 0.12 15 21 H 0.02 0.56 8.14 -51.93 -0.42 0.14 15 22 H 0.05 1.15 8.14 -51.93 -0.42 0.73 15 23 H 0.06 1.24 8.14 -51.93 -0.42 0.81 15 24 H 0.09 1.67 7.86 -51.93 -0.41 1.26 15 25 H 0.09 1.58 8.00 -51.93 -0.42 1.17 15 26 H 0.12 0.63 8.14 -51.93 -0.42 0.21 15 27 H 0.12 0.54 8.14 -51.93 -0.42 0.12 15 28 H 0.44 2.70 8.96 -40.82 -0.37 2.34 15 LS Contribution 253.92 15.07 3.83 3.83 Total: -1.00 -34.93 253.92 -5.88 -40.81 By element: Atomic # 1 Polarization: -0.75 SS G_CDS: -3.27 Total: -4.02 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -1.60 Total: 2.65 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: -0.01 Total: -42.73 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.19 Total: -17.59 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -34.93 -5.88 -40.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042214123.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.829 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds