Wall clock time and date at job start Sun Mar 29 2020 21:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.53547 * 2 1 4 4 C 1.53118 * 109.50209 * 239.89785 * 2 1 3 5 5 C 1.53123 * 109.15585 * 182.40456 * 4 2 1 6 6 C 1.53030 * 109.28009 * 57.65675 * 5 4 2 7 7 N 1.46846 * 109.52377 * 300.82027 * 6 5 4 8 8 C 1.46909 * 111.00162 * 185.84294 * 7 6 5 9 9 C 1.52999 * 109.47025 * 45.78723 * 8 7 6 10 10 C 1.53000 * 109.46965 * 180.02562 * 9 8 7 11 11 C 1.50691 * 109.47457 * 180.02562 * 10 9 8 12 12 H 1.08007 * 119.99895 * 359.97438 * 11 10 9 13 13 C 1.37870 * 120.00467 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99976 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00421 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47141 * 89.99657 * 15 13 11 17 17 H 1.48493 * 109.47256 * 209.99578 * 15 13 11 18 18 H 1.48497 * 109.47135 * 330.00279 * 15 13 11 19 19 C 1.46846 * 111.19997 * 61.74000 * 7 6 5 20 20 H 1.08998 * 109.47480 * 299.90213 * 1 2 3 21 21 H 1.08998 * 109.47301 * 59.90624 * 1 2 3 22 22 H 1.09005 * 109.47006 * 179.90838 * 1 2 3 23 23 H 1.08993 * 109.52399 * 302.30839 * 4 2 1 24 24 H 1.08997 * 109.52156 * 62.43889 * 4 2 1 25 25 H 1.09003 * 109.49962 * 177.59579 * 5 4 2 26 26 H 1.09003 * 109.50448 * 297.71148 * 5 4 2 27 27 H 1.08999 * 109.46586 * 180.80053 * 6 5 4 28 28 H 1.08998 * 109.46592 * 60.83401 * 6 5 4 29 29 H 1.09000 * 109.47285 * 165.78739 * 8 7 6 30 30 H 1.09003 * 109.46644 * 285.78787 * 8 7 6 31 31 H 1.09000 * 109.47102 * 300.00128 * 9 8 7 32 32 H 1.08999 * 109.47491 * 59.99991 * 9 8 7 33 33 H 1.09000 * 109.46802 * 299.99683 * 10 9 8 34 34 H 1.08999 * 109.47537 * 59.99390 * 10 9 8 35 35 H 0.97001 * 120.00475 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.45759 * 58.27846 * 19 7 6 37 37 H 1.09003 * 109.46299 * 178.25316 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7239 -1.2487 5 6 3.5712 -0.7720 -1.2106 6 6 4.0229 -1.4729 0.0725 7 7 3.5092 -0.7420 1.2380 8 6 4.0372 -1.3057 2.4876 9 6 5.5424 -1.5403 2.3453 10 6 6.0923 -2.1279 3.6466 11 6 7.5748 -2.3584 3.5068 12 1 8.0750 -2.1110 2.5820 13 6 8.2930 -2.8852 4.5592 14 7 7.6841 -3.1860 5.6854 15 14 10.1307 -3.1716 4.3856 16 1 10.8644 -1.9550 4.8181 17 1 10.5349 -4.3212 5.2342 18 1 10.4539 -3.4660 2.9664 19 6 2.0409 -0.7234 1.2481 20 1 -0.3634 0.5123 0.8908 21 1 -0.3634 0.5153 -0.8891 22 1 -0.3633 -1.0277 -0.0016 23 1 1.6453 -1.7392 -1.2688 24 1 1.7147 -0.1878 -2.1398 25 1 3.9395 -1.3236 -2.0756 26 1 3.9678 0.2432 -1.2297 27 1 5.1120 -1.4962 0.1096 28 1 3.6375 -2.4924 0.0845 29 1 3.8538 -0.6097 3.3062 30 1 3.5401 -2.2528 2.6976 31 1 5.7259 -2.2362 1.5267 32 1 6.0396 -0.5933 2.1353 33 1 5.9088 -1.4322 4.4654 34 1 5.5951 -3.0750 3.8563 35 1 8.1894 -3.5563 6.4261 36 1 1.6648 -1.7464 1.2545 37 1 1.6904 -0.2020 2.1389 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042221836.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:22 Heat of formation + Delta-G solvation = -29.941928 kcal Electronic energy + Delta-G solvation = -14178.158465 eV Core-core repulsion = 11953.973071 eV Total energy + Delta-G solvation = -2224.185394 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.08797 -35.19107 -33.15072 -31.86025 -30.83465 -26.90336 -26.31561 -23.98436 -22.42063 -21.49804 -19.65096 -19.40923 -16.35191 -15.52170 -14.99911 -14.76627 -14.36877 -14.16707 -14.04828 -13.33281 -12.90713 -12.46181 -12.26577 -12.03424 -11.84355 -11.44326 -11.34503 -10.94835 -10.84939 -10.68905 -10.56953 -10.51419 -10.15779 -10.07983 -9.56670 -9.28928 -9.00716 -8.31532 -7.94872 -5.96938 -3.99040 3.34114 3.40033 3.43605 4.19539 4.49258 4.74387 4.88464 4.93447 5.19886 5.38851 5.46327 5.52557 5.53288 5.62912 5.71621 5.74285 5.79288 5.89494 5.94742 5.99335 6.07084 6.18807 6.21417 6.30622 6.35423 6.46202 6.75244 6.83272 7.13722 7.48364 7.49321 7.71178 7.86498 8.03488 8.46817 9.08127 9.64848 11.14566 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.066570 B = 0.005361 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.508130 B = 5221.502580 C = 5546.635648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.077 0.923 4 C -0.115 4.115 5 C -0.117 4.117 6 C 0.048 3.952 7 N -0.540 5.540 8 C 0.056 3.944 9 C -0.112 4.112 10 C 0.022 3.978 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.060 3.940 20 H 0.054 0.946 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.028 0.972 29 H 0.070 0.930 30 H 0.027 0.973 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.016 0.984 34 H 0.013 0.987 35 H 0.260 0.740 36 H 0.028 0.972 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.142 4.818 -11.777 17.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.095 0.905 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.080 4.080 7 N -0.264 5.264 8 C -0.071 4.071 9 C -0.150 4.150 10 C -0.016 4.016 11 C -0.557 4.557 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.068 4.068 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.034 0.966 34 H 0.032 0.968 35 H 0.069 0.931 36 H 0.046 0.954 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.947 5.220 -11.631 17.472 hybrid contribution 0.712 -1.084 0.160 1.306 sum -11.236 4.136 -11.471 16.581 Atomic orbital electron populations 1.21798 0.95362 1.01605 1.01572 1.21170 0.94693 1.00379 0.94640 0.90470 1.21639 0.96058 1.00162 0.97393 1.21603 0.95353 1.01562 0.96989 1.22206 1.01310 0.94546 0.89921 1.62013 1.06870 1.54517 1.03049 1.22277 0.97228 0.97110 0.90463 1.21794 0.91741 1.00505 1.00924 1.19073 0.95445 0.95753 0.91326 1.21251 0.93594 1.41581 0.99230 0.92715 1.25025 0.98411 0.95684 0.95369 1.69968 1.35837 1.44123 1.03698 0.86600 0.85683 0.77757 0.78001 1.20651 1.21264 1.19896 1.22109 0.88316 0.98473 0.97907 0.92642 0.92714 0.92928 0.92519 0.92238 0.91894 0.91249 0.89431 0.95417 0.91138 0.95493 0.93171 0.92561 0.96555 0.96829 0.93053 0.95381 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.20 37.16 0.34 -1.00 16 2 C -0.09 -1.01 2.88 -90.54 -0.26 -1.28 16 3 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 4 C -0.11 -1.25 5.29 -26.61 -0.14 -1.39 16 5 C -0.12 -1.42 6.09 -26.65 -0.16 -1.58 16 6 C 0.05 0.72 4.85 -3.84 -0.02 0.70 16 7 N -0.54 -8.64 4.81 -234.67 -1.13 -9.76 16 8 C 0.06 1.03 5.27 -3.82 -0.02 1.01 16 9 C -0.11 -2.39 4.40 -26.73 -0.12 -2.51 16 10 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 11 C -0.52 -14.98 9.11 -34.45 -0.31 -15.30 16 12 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 15 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.06 0.81 4.71 -3.84 -0.02 0.80 16 20 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.09 1.41 5.81 -51.93 -0.30 1.11 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.03 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.05 1.05 6.21 -51.93 -0.32 0.73 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 LS Contribution 289.45 15.07 4.36 4.36 Total: -1.00 -29.99 289.45 -8.92 -38.91 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -6.93 Total: -5.22 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -0.95 Total: -18.57 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.39 Total: -36.43 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.99 -8.92 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042221836.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.970 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds