Wall clock time and date at job start Sun Mar 29 2020 21:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.53547 * 2 1 4 4 C 1.53118 * 109.50209 * 239.89785 * 2 1 3 5 5 C 1.53123 * 109.15585 * 182.40456 * 4 2 1 6 6 C 1.53030 * 109.28009 * 57.65675 * 5 4 2 7 7 N 1.46846 * 109.52377 * 300.82027 * 6 5 4 8 8 C 1.46909 * 111.00162 * 185.84294 * 7 6 5 9 9 C 1.52999 * 109.47025 * 45.78723 * 8 7 6 10 10 C 1.53000 * 109.46965 * 180.02562 * 9 8 7 11 11 C 1.50691 * 109.47457 * 180.02562 * 10 9 8 12 12 H 1.08007 * 119.99895 * 359.97438 * 11 10 9 13 13 C 1.37870 * 120.00467 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99976 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00421 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47141 * 89.99657 * 15 13 11 17 17 H 1.48493 * 109.47256 * 209.99578 * 15 13 11 18 18 H 1.48497 * 109.47135 * 330.00279 * 15 13 11 19 19 C 1.46846 * 111.19997 * 61.74000 * 7 6 5 20 20 H 1.08998 * 109.47480 * 299.90213 * 1 2 3 21 21 H 1.08998 * 109.47301 * 59.90624 * 1 2 3 22 22 H 1.09005 * 109.47006 * 179.90838 * 1 2 3 23 23 H 1.08993 * 109.52399 * 302.30839 * 4 2 1 24 24 H 1.08997 * 109.52156 * 62.43889 * 4 2 1 25 25 H 1.09003 * 109.49962 * 177.59579 * 5 4 2 26 26 H 1.09003 * 109.50448 * 297.71148 * 5 4 2 27 27 H 1.08999 * 109.46586 * 180.80053 * 6 5 4 28 28 H 1.08998 * 109.46592 * 60.83401 * 6 5 4 29 29 H 1.09000 * 109.47285 * 165.78739 * 8 7 6 30 30 H 1.09003 * 109.46644 * 285.78787 * 8 7 6 31 31 H 1.09000 * 109.47102 * 300.00128 * 9 8 7 32 32 H 1.08999 * 109.47491 * 59.99991 * 9 8 7 33 33 H 1.09000 * 109.46802 * 299.99683 * 10 9 8 34 34 H 1.08999 * 109.47537 * 59.99390 * 10 9 8 35 35 H 0.97001 * 120.00475 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.45759 * 58.27846 * 19 7 6 37 37 H 1.09003 * 109.46299 * 178.25316 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7239 -1.2487 5 6 3.5712 -0.7720 -1.2106 6 6 4.0229 -1.4729 0.0725 7 7 3.5092 -0.7420 1.2380 8 6 4.0372 -1.3057 2.4876 9 6 5.5424 -1.5403 2.3453 10 6 6.0923 -2.1279 3.6466 11 6 7.5748 -2.3584 3.5068 12 1 8.0750 -2.1110 2.5820 13 6 8.2930 -2.8852 4.5592 14 7 7.6841 -3.1860 5.6854 15 14 10.1307 -3.1716 4.3856 16 1 10.8644 -1.9550 4.8181 17 1 10.5349 -4.3212 5.2342 18 1 10.4539 -3.4660 2.9664 19 6 2.0409 -0.7234 1.2481 20 1 -0.3634 0.5123 0.8908 21 1 -0.3634 0.5153 -0.8891 22 1 -0.3633 -1.0277 -0.0016 23 1 1.6453 -1.7392 -1.2688 24 1 1.7147 -0.1878 -2.1398 25 1 3.9395 -1.3236 -2.0756 26 1 3.9678 0.2432 -1.2297 27 1 5.1120 -1.4962 0.1096 28 1 3.6375 -2.4924 0.0845 29 1 3.8538 -0.6097 3.3062 30 1 3.5401 -2.2528 2.6976 31 1 5.7259 -2.2362 1.5267 32 1 6.0396 -0.5933 2.1353 33 1 5.9088 -1.4322 4.4654 34 1 5.5951 -3.0750 3.8563 35 1 8.1894 -3.5563 6.4261 36 1 1.6648 -1.7464 1.2545 37 1 1.6904 -0.2020 2.1389 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042221836.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:22 Heat of formation + Delta-G solvation = -47.736019 kcal Electronic energy + Delta-G solvation = -14178.930074 eV Core-core repulsion = 11953.973071 eV Total energy + Delta-G solvation = -2224.957004 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.23419 -36.66894 -35.02516 -33.00469 -32.52479 -28.59793 -27.37753 -25.63137 -23.57057 -23.11545 -21.06646 -20.56373 -18.50292 -16.90468 -16.43181 -16.25149 -16.02178 -15.23503 -15.01420 -14.76955 -14.41063 -13.82704 -13.66926 -13.41433 -13.15565 -12.89741 -12.68159 -12.66689 -12.41573 -12.20550 -11.91669 -11.70058 -11.46446 -11.38886 -11.30087 -11.06158 -10.91859 -10.55662 -9.24885 -8.20935 -6.32429 1.39657 1.41438 1.52570 2.40485 2.96591 3.12151 3.81638 3.93322 3.96588 4.16011 4.24261 4.34700 4.46325 4.52511 4.64478 4.66159 4.73909 4.80104 4.87434 4.93936 4.96572 5.02360 5.11575 5.14465 5.19929 5.25537 5.32560 5.40746 5.49308 5.55697 5.71444 5.83241 6.11655 6.22786 6.27856 6.84085 7.36984 8.91195 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.066570 B = 0.005361 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.508130 B = 5221.502580 C = 5546.635648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 H 0.073 0.927 4 C -0.112 4.112 5 C -0.112 4.112 6 C 0.044 3.956 7 N -0.545 5.545 8 C 0.066 3.934 9 C -0.095 4.095 10 C 0.025 3.975 11 C -0.543 4.543 12 H 0.059 0.941 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.263 1.263 19 C 0.057 3.943 20 H 0.057 0.943 21 H 0.069 0.931 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.023 0.977 29 H 0.067 0.933 30 H 0.021 0.979 31 H 0.054 0.946 32 H 0.053 0.947 33 H -0.008 1.008 34 H -0.011 1.011 35 H 0.264 0.736 36 H 0.026 0.974 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.227 5.236 -13.443 18.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.150 4.150 6 C -0.083 4.083 7 N -0.269 5.269 8 C -0.061 4.061 9 C -0.133 4.133 10 C -0.012 4.012 11 C -0.581 4.581 12 H 0.078 0.922 13 C -0.198 4.198 14 N -0.575 5.575 15 Si 0.791 3.209 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.187 1.187 19 C -0.071 4.071 20 H 0.076 0.924 21 H 0.088 0.912 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.010 0.990 34 H 0.007 0.993 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.047 5.647 -13.315 18.823 hybrid contribution 0.703 -1.216 0.698 1.568 sum -11.344 4.431 -12.617 17.536 Atomic orbital electron populations 1.21757 0.93532 1.02031 1.02520 1.21158 0.96146 0.99689 0.93521 0.90890 1.21644 0.94851 1.00528 0.97968 1.21585 0.96504 1.01188 0.95743 1.22260 1.00374 0.94742 0.90953 1.62025 1.08602 1.54202 1.02100 1.22029 0.95167 0.96939 0.92005 1.21539 0.93687 0.99898 0.98135 1.18974 0.94939 0.94201 0.93101 1.21676 0.94850 1.41944 0.99669 0.92235 1.26001 1.03900 0.95104 0.94838 1.70101 1.38051 1.44722 1.04591 0.85421 0.78992 0.77948 0.78533 1.19679 1.20631 1.18702 1.22233 0.86529 0.98779 0.99527 0.92367 0.91158 0.92756 0.92379 0.90109 0.90268 0.91487 0.91031 0.95888 0.91470 0.96097 0.92726 0.92826 0.98990 0.99256 0.92731 0.95624 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.20 71.98 0.66 -1.56 16 2 C -0.09 -1.76 2.88 -10.74 -0.03 -1.79 16 3 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 4 C -0.11 -2.13 5.29 30.67 0.16 -1.97 16 5 C -0.11 -2.50 6.09 30.65 0.19 -2.31 16 6 C 0.04 1.29 4.85 86.32 0.42 1.71 16 7 N -0.54 -17.16 4.81 -896.36 -4.31 -21.47 16 8 C 0.07 2.47 5.27 86.30 0.46 2.93 16 9 C -0.09 -4.13 4.40 30.59 0.13 -4.00 16 10 C 0.03 1.40 4.97 29.85 0.15 1.55 16 11 C -0.54 -31.86 9.11 25.60 0.23 -31.63 16 12 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 13 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 14 N -0.93 -58.01 13.29 21.44 0.28 -57.73 16 15 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 18 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 19 C 0.06 1.48 4.71 86.33 0.41 1.89 16 20 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 21 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 23 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 2.28 5.81 -2.39 -0.01 2.27 16 28 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.02 0.80 8.08 -2.39 -0.02 0.78 16 31 H 0.05 2.31 6.21 -2.39 -0.01 2.30 16 32 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 33 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 34 H -0.01 -0.65 8.14 -2.39 -0.02 -0.66 16 35 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 1.82 8.12 -2.39 -0.02 1.80 16 Total: -1.00 -64.17 289.45 2.23 -61.94 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 0.99 Total: 5.02 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 3.24 Total: -34.77 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -4.02 Total: -79.20 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -64.17 2.23 -61.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042221836.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.206 kcal (2) G-P(sol) polarization free energy of solvation -64.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds