Wall clock time and date at job start Sun Mar 29 2020 21:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47087 * 2 1 4 4 N 1.46900 * 109.46934 * 174.86445 * 3 2 1 5 5 C 1.46893 * 111.00322 * 75.74895 * 4 3 2 6 6 C 1.53005 * 109.47187 * 189.99996 * 5 4 3 7 7 C 1.50694 * 109.46965 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00217 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99749 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99664 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99926 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47066 * 89.99984 * 11 9 7 13 13 H 1.48497 * 109.46752 * 209.99804 * 11 9 7 14 14 H 1.48495 * 109.47236 * 330.00130 * 11 9 7 15 15 C 1.46907 * 110.99670 * 199.70258 * 4 3 2 16 16 C 1.53008 * 109.47045 * 75.31848 * 15 4 3 17 17 C 1.53001 * 117.49704 * 243.45243 * 16 15 4 18 18 C 1.53001 * 117.49532 * 174.83029 * 16 15 4 19 19 H 1.09004 * 109.47063 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47509 * 299.99665 * 1 2 3 21 21 H 1.08996 * 109.47327 * 60.00249 * 1 2 3 22 22 H 1.09007 * 109.47285 * 239.99969 * 2 1 3 23 23 H 1.09006 * 109.47401 * 119.99698 * 2 1 3 24 24 H 1.08997 * 109.47003 * 294.86427 * 3 2 1 25 25 H 1.09001 * 109.47175 * 54.86095 * 3 2 1 26 26 H 1.08995 * 109.47222 * 309.99544 * 5 4 3 27 27 H 1.08999 * 109.47116 * 69.99522 * 5 4 3 28 28 H 1.09005 * 109.46543 * 299.99873 * 6 5 4 29 29 H 1.09001 * 109.47009 * 59.99532 * 6 5 4 30 30 H 0.97001 * 119.99623 * 179.97438 * 10 9 7 31 31 H 1.08993 * 109.46776 * 195.31419 * 15 4 3 32 32 H 1.08994 * 109.46989 * 315.32170 * 15 4 3 33 33 H 1.08999 * 115.54991 * 29.16196 * 16 15 4 34 34 H 1.09004 * 117.49878 * 0.02562 * 17 16 15 35 35 H 1.08994 * 117.49833 * 145.01991 * 17 16 15 36 36 H 1.08996 * 117.49462 * 214.97186 * 18 16 15 37 37 H 1.08997 * 117.49899 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5037 1.4443 0.1240 5 6 4.1401 1.0679 -1.1453 6 6 5.6355 0.8380 -0.9177 7 6 6.2884 0.4525 -2.2199 8 1 5.6960 0.3783 -3.1199 9 6 7.6422 0.1943 -2.2625 10 7 8.2119 -0.1427 -3.3990 11 14 8.6667 0.3218 -0.7058 12 1 8.6894 -0.9946 -0.0189 13 1 10.0533 0.7207 -1.0571 14 1 8.0720 1.3406 0.1962 15 6 3.9909 2.7494 0.5904 16 6 3.7048 2.8956 2.0864 17 6 2.7468 4.0081 2.5170 18 6 4.2462 4.1414 2.7906 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.7537 1.9291 -0.9324 25 1 1.6034 1.9823 0.8404 26 1 3.6850 0.1520 -1.5223 27 1 4.0020 1.8682 -1.8724 28 1 6.0906 1.7540 -0.5406 29 1 5.7735 0.0378 -0.1906 30 1 9.1643 -0.3239 -3.4290 31 1 5.0647 2.8194 0.4173 32 1 3.4822 3.5436 0.0440 33 1 3.6842 1.9655 2.6542 34 1 2.3199 4.6356 1.7345 35 1 2.0955 3.8099 3.3682 36 1 4.5813 4.0308 3.8219 37 1 4.8058 4.8569 2.1882 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042223089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:50 Heat of formation + Delta-G solvation = 8.764468 kcal Electronic energy + Delta-G solvation = -14244.221151 eV Core-core repulsion = 12021.714192 eV Total energy + Delta-G solvation = -2222.506959 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.38808 -36.22595 -33.59839 -32.45536 -30.02456 -27.07327 -25.46512 -22.86592 -22.29464 -20.87449 -20.40458 -19.64816 -16.81020 -15.86963 -15.11591 -14.71336 -14.39456 -13.99456 -13.94827 -13.25675 -12.84709 -12.73762 -12.37289 -11.87054 -11.53952 -11.43614 -11.38140 -11.15463 -10.95620 -10.79776 -10.51954 -10.19199 -10.00079 -9.87266 -9.64959 -9.51528 -9.12675 -8.49880 -7.79744 -6.02081 -3.99854 3.34772 3.41478 3.46941 3.89817 4.30941 4.48648 4.91112 5.04221 5.14186 5.18198 5.30268 5.32573 5.52624 5.57686 5.66895 5.72335 5.80401 5.90483 5.91407 6.01029 6.04081 6.13707 6.15914 6.27513 6.38388 6.42025 6.46713 6.55309 6.83885 7.21175 7.38412 7.65891 7.71976 7.89347 8.55968 9.02310 9.60729 11.11346 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.023822 B = 0.008656 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.120974 B = 3234.099363 C = 4148.240695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.056 3.944 4 N -0.541 5.541 5 C 0.070 3.930 6 C -0.008 4.008 7 C -0.521 4.521 8 H 0.070 0.930 9 C 0.067 3.933 10 N -0.905 5.905 11 Si 0.881 3.119 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.265 1.265 15 C 0.080 3.920 16 C -0.136 4.136 17 C -0.188 4.188 18 C -0.182 4.182 19 H 0.052 0.948 20 H 0.050 0.950 21 H 0.050 0.950 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.027 0.973 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.024 0.976 28 H 0.016 0.984 29 H 0.020 0.980 30 H 0.263 0.737 31 H 0.087 0.913 32 H 0.030 0.970 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.132 5.557 10.708 17.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.072 4.072 4 N -0.265 5.265 5 C -0.057 4.057 6 C -0.045 4.045 7 C -0.559 4.559 8 H 0.088 0.912 9 C -0.134 4.134 10 N -0.544 5.544 11 Si 0.708 3.292 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.189 1.189 15 C -0.048 4.048 16 C -0.154 4.154 17 C -0.225 4.225 18 C -0.220 4.220 19 H 0.071 0.929 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.045 0.955 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.042 0.958 28 H 0.034 0.966 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.048 0.952 33 H 0.129 0.871 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.833 5.158 10.961 16.934 hybrid contribution 0.434 0.641 0.086 0.779 sum -11.399 5.800 11.047 16.900 Atomic orbital electron populations 1.21733 0.96315 1.01311 1.01288 1.21512 0.94484 0.96975 1.02880 1.22112 0.88663 0.96761 0.99649 1.62031 1.04679 1.28095 1.31648 1.22152 0.97144 0.99068 0.87344 1.19595 0.90747 0.96632 0.97554 1.21104 0.93717 1.46520 0.94588 0.91175 1.24999 0.97867 0.94518 0.95999 1.69920 1.11377 1.47612 1.25466 0.86755 0.79288 0.79077 0.84057 1.20248 1.21532 1.18908 1.21731 1.01418 0.89848 0.91805 1.22368 1.02946 0.93445 0.96675 1.23028 0.92753 1.03456 1.03297 1.22926 0.96322 1.01333 1.01392 0.92862 0.93076 0.93123 0.91817 0.91315 0.95463 0.91454 0.91309 0.95772 0.96626 0.96149 0.92771 0.89478 0.95221 0.87148 0.89287 0.89301 0.89030 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.16 0.37 -1.25 16 2 C -0.12 -1.64 5.97 -26.73 -0.16 -1.80 16 3 C 0.06 0.83 4.81 -3.82 -0.02 0.81 16 4 N -0.54 -9.48 4.37 -234.63 -1.02 -10.50 16 5 C 0.07 1.44 4.72 -3.82 -0.02 1.42 16 6 C -0.01 -0.19 4.01 -27.88 -0.11 -0.30 16 7 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 9 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 10 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 11 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 15 C 0.08 1.30 5.11 -3.82 -0.02 1.28 16 16 C -0.14 -1.87 5.14 -90.61 -0.47 -2.34 16 17 C -0.19 -2.15 10.09 -26.73 -0.27 -2.42 16 18 C -0.18 -2.18 10.25 -26.73 -0.27 -2.46 16 19 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 20 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.95 6.96 -51.93 -0.36 0.58 16 23 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.03 0.41 8.00 -51.93 -0.42 -0.01 16 25 H 0.07 0.91 7.20 -51.93 -0.37 0.53 16 26 H 0.07 1.43 6.72 -51.93 -0.35 1.08 16 27 H 0.02 0.51 8.12 -51.93 -0.42 0.09 16 28 H 0.02 0.38 5.31 -51.93 -0.28 0.11 16 29 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.09 1.60 5.88 -51.93 -0.31 1.29 16 32 H 0.03 0.46 7.74 -51.93 -0.40 0.06 16 33 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.09 0.99 8.03 -51.93 -0.42 0.57 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 294.65 15.07 4.44 4.44 Total: -1.00 -30.10 294.65 -8.56 -38.66 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.68 Total: -2.07 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -1.40 Total: -20.58 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: -0.25 Total: -37.96 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.10 -8.56 -38.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042223089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.424 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds