Wall clock time and date at job start Sun Mar 29 2020 21:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47087 * 2 1 4 4 N 1.46900 * 109.46934 * 174.86445 * 3 2 1 5 5 C 1.46893 * 111.00322 * 75.74895 * 4 3 2 6 6 C 1.53005 * 109.47187 * 189.99996 * 5 4 3 7 7 C 1.50694 * 109.46965 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00217 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99749 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99664 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99926 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47066 * 89.99984 * 11 9 7 13 13 H 1.48497 * 109.46752 * 209.99804 * 11 9 7 14 14 H 1.48495 * 109.47236 * 330.00130 * 11 9 7 15 15 C 1.46907 * 110.99670 * 199.70258 * 4 3 2 16 16 C 1.53008 * 109.47045 * 75.31848 * 15 4 3 17 17 C 1.53001 * 117.49704 * 243.45243 * 16 15 4 18 18 C 1.53001 * 117.49532 * 174.83029 * 16 15 4 19 19 H 1.09004 * 109.47063 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47509 * 299.99665 * 1 2 3 21 21 H 1.08996 * 109.47327 * 60.00249 * 1 2 3 22 22 H 1.09007 * 109.47285 * 239.99969 * 2 1 3 23 23 H 1.09006 * 109.47401 * 119.99698 * 2 1 3 24 24 H 1.08997 * 109.47003 * 294.86427 * 3 2 1 25 25 H 1.09001 * 109.47175 * 54.86095 * 3 2 1 26 26 H 1.08995 * 109.47222 * 309.99544 * 5 4 3 27 27 H 1.08999 * 109.47116 * 69.99522 * 5 4 3 28 28 H 1.09005 * 109.46543 * 299.99873 * 6 5 4 29 29 H 1.09001 * 109.47009 * 59.99532 * 6 5 4 30 30 H 0.97001 * 119.99623 * 179.97438 * 10 9 7 31 31 H 1.08993 * 109.46776 * 195.31419 * 15 4 3 32 32 H 1.08994 * 109.46989 * 315.32170 * 15 4 3 33 33 H 1.08999 * 115.54991 * 29.16196 * 16 15 4 34 34 H 1.09004 * 117.49878 * 0.02562 * 17 16 15 35 35 H 1.08994 * 117.49833 * 145.01991 * 17 16 15 36 36 H 1.08996 * 117.49462 * 214.97186 * 18 16 15 37 37 H 1.08997 * 117.49899 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5037 1.4443 0.1240 5 6 4.1401 1.0679 -1.1453 6 6 5.6355 0.8380 -0.9177 7 6 6.2884 0.4525 -2.2199 8 1 5.6960 0.3783 -3.1199 9 6 7.6422 0.1943 -2.2625 10 7 8.2119 -0.1427 -3.3990 11 14 8.6667 0.3218 -0.7058 12 1 8.6894 -0.9946 -0.0189 13 1 10.0533 0.7207 -1.0571 14 1 8.0720 1.3406 0.1962 15 6 3.9909 2.7494 0.5904 16 6 3.7048 2.8956 2.0864 17 6 2.7468 4.0081 2.5170 18 6 4.2462 4.1414 2.7906 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.7537 1.9291 -0.9324 25 1 1.6034 1.9823 0.8404 26 1 3.6850 0.1520 -1.5223 27 1 4.0020 1.8682 -1.8724 28 1 6.0906 1.7540 -0.5406 29 1 5.7735 0.0378 -0.1906 30 1 9.1643 -0.3239 -3.4290 31 1 5.0647 2.8194 0.4173 32 1 3.4822 3.5436 0.0440 33 1 3.6842 1.9655 2.6542 34 1 2.3199 4.6356 1.7345 35 1 2.0955 3.8099 3.3682 36 1 4.5813 4.0308 3.8219 37 1 4.8058 4.8569 2.1882 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042223089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:49 Heat of formation + Delta-G solvation = -9.140693 kcal Electronic energy + Delta-G solvation = -14244.997577 eV Core-core repulsion = 12021.714192 eV Total energy + Delta-G solvation = -2223.283385 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.65256 -37.37064 -35.36778 -34.08407 -31.87900 -28.27194 -27.17792 -24.33019 -23.22227 -22.34515 -21.65278 -21.05840 -18.99806 -17.06923 -16.43153 -16.40678 -15.64493 -15.57457 -15.16075 -14.77833 -14.69293 -14.07028 -13.70036 -13.27602 -13.08481 -12.88819 -12.54575 -12.35691 -12.28590 -12.00726 -11.88151 -11.79481 -11.55448 -11.48239 -11.38526 -11.02237 -10.81437 -10.63400 -9.21616 -8.31302 -6.35329 1.35607 1.36387 1.49638 2.35307 2.85767 3.03821 3.06875 3.89772 4.01852 4.07004 4.14987 4.22233 4.37870 4.42102 4.48622 4.54889 4.70861 4.77396 4.80544 4.83691 4.89075 4.94817 5.02621 5.08168 5.21269 5.27268 5.29446 5.33703 5.38308 5.48446 5.50801 5.62165 6.15923 6.28393 6.34220 6.72178 7.29385 8.85469 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.023822 B = 0.008656 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.120974 B = 3234.099363 C = 4148.240695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C 0.058 3.942 4 N -0.545 5.545 5 C 0.082 3.918 6 C 0.001 3.999 7 C -0.534 4.534 8 H 0.031 0.969 9 C 0.008 3.992 10 N -0.950 5.950 11 Si 0.951 3.049 12 H -0.267 1.267 13 H -0.281 1.281 14 H -0.249 1.249 15 C 0.081 3.919 16 C -0.154 4.154 17 C -0.169 4.169 18 C -0.179 4.179 19 H 0.061 0.939 20 H 0.065 0.935 21 H 0.053 0.947 22 H 0.043 0.957 23 H 0.064 0.936 24 H 0.025 0.975 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.014 0.986 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.267 0.733 31 H 0.062 0.938 32 H 0.035 0.965 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.081 6.447 13.258 19.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C -0.069 4.069 4 N -0.269 5.269 5 C -0.045 4.045 6 C -0.036 4.036 7 C -0.572 4.572 8 H 0.050 0.950 9 C -0.189 4.189 10 N -0.590 5.590 11 Si 0.774 3.226 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.173 1.173 15 C -0.047 4.047 16 C -0.173 4.173 17 C -0.206 4.206 18 C -0.216 4.216 19 H 0.080 0.920 20 H 0.084 0.916 21 H 0.072 0.928 22 H 0.062 0.938 23 H 0.082 0.918 24 H 0.043 0.957 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.032 0.968 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.807 6.057 13.519 19.582 hybrid contribution 0.677 0.369 -0.783 1.099 sum -12.130 6.426 12.736 18.725 Atomic orbital electron populations 1.21681 0.93898 1.02251 1.02155 1.21500 0.96580 0.95970 1.01688 1.22194 0.86660 0.97714 1.00337 1.62010 1.06392 1.29184 1.29292 1.21828 0.95196 0.98614 0.88897 1.19449 0.92939 0.96331 0.94923 1.21424 0.94013 1.46547 0.95264 0.95018 1.25962 0.99270 0.93994 0.99695 1.70063 1.12044 1.48881 1.28049 0.85643 0.77482 0.79825 0.79621 1.19206 1.20715 1.17256 1.21713 0.99850 0.89248 0.93877 1.22187 1.06080 0.94274 0.94733 1.23099 0.92614 1.01207 1.03632 1.23027 0.97037 0.99733 1.01826 0.91964 0.91628 0.92795 0.93769 0.91763 0.95663 0.89452 0.91945 0.96800 0.96282 0.96329 0.92405 0.91997 0.94694 0.87731 0.88815 0.87464 0.87631 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.91 71.98 0.71 -2.06 16 2 C -0.12 -3.11 5.97 30.59 0.18 -2.93 16 3 C 0.06 1.63 4.81 86.30 0.42 2.04 16 4 N -0.54 -18.69 4.37 -896.22 -3.92 -22.60 16 5 C 0.08 3.46 4.72 86.31 0.41 3.86 16 6 C 0.00 0.06 4.01 29.85 0.12 0.18 16 7 C -0.53 -31.84 9.66 25.60 0.25 -31.59 16 8 H 0.03 2.06 7.99 -2.91 -0.02 2.04 16 9 C 0.01 0.47 5.47 84.66 0.46 0.93 16 10 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 11 Si 0.95 45.67 27.47 68.60 1.88 47.56 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 14 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 15 C 0.08 2.54 5.11 86.30 0.44 2.98 16 16 C -0.15 -3.90 5.14 -10.79 -0.06 -3.96 16 17 C -0.17 -3.27 10.09 30.60 0.31 -2.97 16 18 C -0.18 -3.78 10.25 30.60 0.31 -3.47 16 19 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 20 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.04 1.31 6.96 -2.38 -0.02 1.29 16 23 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 24 H 0.03 0.72 8.00 -2.39 -0.02 0.70 16 25 H 0.09 2.10 7.20 -2.39 -0.02 2.09 16 26 H 0.06 2.67 6.72 -2.39 -0.02 2.65 16 27 H 0.01 0.60 8.12 -2.39 -0.02 0.58 16 28 H 0.02 0.93 5.31 -2.38 -0.01 0.92 16 29 H 0.02 0.91 7.57 -2.39 -0.02 0.90 16 30 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 31 H 0.06 2.23 5.88 -2.39 -0.01 2.22 16 32 H 0.03 1.04 7.74 -2.39 -0.02 1.02 16 33 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.09 1.76 8.03 -2.39 -0.02 1.74 16 35 H 0.11 1.72 8.14 -2.39 -0.02 1.71 16 36 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -65.37 294.65 2.77 -62.60 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.94 Total: 9.78 kcal Atomic # 6 Polarization: -40.53 SS G_CDS: 3.56 Total: -36.98 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -3.62 Total: -82.96 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.88 Total: 47.56 kcal Total: -65.37 2.77 -62.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042223089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.455 kcal (2) G-P(sol) polarization free energy of solvation -65.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds