Wall clock time and date at job start Sun Mar 29 2020 21:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47134 * 2 1 4 4 C 1.53002 * 109.46972 * 119.99215 * 2 1 3 5 5 C 1.53002 * 109.47128 * 60.00146 * 4 2 1 6 6 C 1.52997 * 109.46978 * 59.99726 * 5 4 2 7 7 C 1.53002 * 109.47415 * 300.00098 * 6 5 4 8 8 H 1.09002 * 109.47070 * 300.00053 * 7 6 5 9 9 N 1.46899 * 109.47394 * 180.02562 * 7 6 5 10 10 C 1.46901 * 111.00056 * 183.95896 * 9 7 6 11 11 C 1.46904 * 111.00029 * 59.99847 * 9 7 6 12 12 C 1.50697 * 109.47025 * 189.99877 * 11 9 7 13 13 H 1.07997 * 120.00242 * 0.02562 * 12 11 9 14 14 C 1.37874 * 120.00006 * 180.02562 * 12 11 9 15 15 N 1.31513 * 119.99732 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00282 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46887 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47446 * 120.00231 * 16 14 12 19 19 H 1.48506 * 109.46734 * 240.00449 * 16 14 12 20 20 C 1.52992 * 109.47224 * 239.99165 * 2 1 3 21 21 H 1.09004 * 109.47298 * 300.00609 * 1 2 3 22 22 H 1.09001 * 109.46993 * 60.00194 * 1 2 3 23 23 H 1.09004 * 109.47552 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00487 * 4 2 1 25 25 H 1.09002 * 109.47596 * 180.02562 * 4 2 1 26 26 H 1.09002 * 109.47097 * 299.99925 * 5 4 2 27 27 H 1.08998 * 109.47844 * 180.02562 * 5 4 2 28 28 H 1.09000 * 109.47140 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.47497 * 60.00450 * 6 5 4 30 30 H 1.08997 * 109.47290 * 59.99585 * 10 9 7 31 31 H 1.09001 * 109.47028 * 179.97438 * 10 9 7 32 32 H 1.09001 * 109.46536 * 299.99508 * 10 9 7 33 33 H 1.08998 * 109.46911 * 310.00317 * 11 9 7 34 34 H 1.08995 * 109.46403 * 70.00169 * 11 9 7 35 35 H 0.97002 * 120.00107 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.47103 * 180.02562 * 20 2 1 37 37 H 1.08998 * 109.46862 * 60.00859 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.5299 -2.1636 1.2495 6 6 2.0399 -2.8850 0.0004 7 6 1.5300 -2.1639 -1.2490 8 1 0.4400 -2.1639 -1.2490 9 7 2.0191 -2.8568 -2.4483 10 6 1.6270 -2.1384 -3.6682 11 6 1.5476 -4.2477 -2.4818 12 6 2.2593 -4.9930 -3.5814 13 1 2.9892 -4.4845 -4.1938 14 6 1.9787 -6.3241 -3.8056 15 7 1.0895 -6.9433 -3.0602 16 14 2.8613 -7.2482 -5.1681 17 1 3.8058 -6.3319 -5.8563 18 1 3.6130 -8.3891 -4.5862 19 1 1.8663 -7.7580 -6.1455 20 6 2.0400 -0.7214 -1.2491 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.6766 -0.2072 2.1393 25 1 3.1299 -0.7208 1.2497 26 1 0.4399 -2.1636 1.2495 27 1 1.8928 -2.6773 2.1398 28 1 1.6763 -3.9125 0.0003 29 1 3.1300 -2.8850 0.0004 30 1 2.0481 -1.1332 -3.6491 31 1 2.0023 -2.6726 -4.5410 32 1 0.5400 -2.0761 -3.7195 33 1 1.7568 -4.7254 -1.5247 34 1 0.4739 -4.2628 -2.6686 35 1 0.8917 -7.8797 -3.2181 36 1 3.1300 -0.7218 -1.2488 37 1 1.6767 -0.2076 -2.1391 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042240517.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:19 Heat of formation + Delta-G solvation = -19.954939 kcal Electronic energy + Delta-G solvation = -14843.531327 eV Core-core repulsion = 12619.779001 eV Total energy + Delta-G solvation = -2223.752326 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.16290 -35.61172 -32.48583 -31.49417 -29.28985 -27.33997 -26.33768 -24.71062 -22.14249 -21.58896 -19.80843 -18.25946 -16.47883 -15.52082 -14.73744 -14.55535 -13.98893 -13.68391 -13.49973 -13.17604 -12.89504 -12.34929 -12.17091 -11.88100 -11.43707 -11.31075 -11.07203 -10.81395 -10.79448 -10.68387 -10.59196 -10.41768 -10.19314 -9.86347 -9.72511 -9.26793 -9.08015 -8.37336 -7.11355 -5.98711 -3.99156 3.33017 3.40232 3.45447 4.45529 4.83801 4.97323 4.98692 5.28929 5.37230 5.51286 5.60800 5.61433 5.76081 5.80343 5.88498 5.96200 6.06687 6.10280 6.17903 6.21972 6.29369 6.38813 6.45772 6.53222 6.56209 6.64115 6.77441 6.85615 6.93598 7.41247 7.42843 7.86910 8.18200 8.30311 8.64697 9.09199 9.64633 11.12247 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.052278 B = 0.007416 C = 0.006987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.467197 B = 3774.710978 C = 4006.491585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 H 0.063 0.937 4 C -0.112 4.112 5 C -0.119 4.119 6 C -0.113 4.113 7 C 0.086 3.914 8 H 0.030 0.970 9 N -0.539 5.539 10 C 0.036 3.964 11 C 0.189 3.811 12 C -0.504 4.504 13 H 0.063 0.937 14 C 0.053 3.947 15 N -0.900 5.900 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.108 4.108 21 H 0.048 0.952 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.007 0.993 33 H 0.037 0.963 34 H -0.013 1.013 35 H 0.260 0.740 36 H 0.066 0.934 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.076 11.891 6.388 13.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 H 0.082 0.918 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.150 4.150 7 C -0.023 4.023 8 H 0.047 0.953 9 N -0.264 5.264 10 C -0.112 4.112 11 C 0.064 3.936 12 C -0.543 4.543 13 H 0.081 0.919 14 C -0.147 4.147 15 N -0.540 5.540 16 Si 0.724 3.276 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.212 1.212 20 C -0.145 4.145 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.026 0.974 33 H 0.054 0.946 34 H 0.005 0.995 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.355 11.699 6.421 13.350 hybrid contribution -0.536 -0.655 -0.787 1.156 sum -0.181 11.044 5.634 12.399 Atomic orbital electron populations 1.21945 0.95734 1.02297 1.00809 1.21087 0.95681 0.98620 0.95475 0.91833 1.21553 1.00477 0.95971 0.96945 1.21577 1.00684 0.95302 0.98150 1.21616 1.01292 0.99463 0.92676 1.21542 0.96160 0.92856 0.91695 0.95266 1.62135 1.59925 1.04308 0.99984 1.22233 0.96808 0.97436 0.94747 1.19797 0.93391 0.82384 0.98054 1.21240 1.22418 0.94821 1.15825 0.91897 1.24991 0.95437 0.97631 0.96672 1.69972 1.33451 1.10919 1.39624 0.86467 0.79495 0.79766 0.81842 1.19695 1.21038 1.21177 1.21664 1.01053 0.95337 0.96490 0.93318 0.93147 0.91830 0.92729 0.92110 0.92144 0.92409 0.91143 0.91571 0.93432 0.90959 0.97418 0.94552 0.99524 0.93074 0.91523 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.50 37.16 0.32 -1.53 16 2 C -0.09 -1.14 3.19 -90.62 -0.29 -1.43 16 3 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.11 -1.38 5.45 -26.73 -0.15 -1.53 16 5 C -0.12 -1.67 5.65 -26.73 -0.15 -1.82 16 6 C -0.11 -1.99 5.00 -26.73 -0.13 -2.12 16 7 C 0.09 1.59 1.67 -67.71 -0.11 1.48 16 8 H 0.03 0.57 6.43 -51.93 -0.33 0.24 16 9 N -0.54 -12.00 4.62 -236.33 -1.09 -13.09 16 10 C 0.04 0.74 8.92 60.07 0.54 1.27 16 11 C 0.19 5.03 4.54 -4.97 -0.02 5.00 16 12 C -0.50 -14.46 8.46 -34.44 -0.29 -14.75 16 13 H 0.06 1.79 7.12 -52.49 -0.37 1.42 16 14 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 16 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 C -0.11 -1.64 4.37 -26.74 -0.12 -1.76 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.87 4.81 -51.93 -0.25 0.62 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.84 6.43 -51.93 -0.33 0.50 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.41 6.20 -51.93 -0.32 1.09 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.82 6.24 -51.93 -0.32 0.50 16 31 H 0.07 1.56 6.76 -51.93 -0.35 1.21 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.04 1.02 5.83 -51.93 -0.30 0.72 16 34 H -0.01 -0.38 8.12 -51.93 -0.42 -0.80 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.89 6.35 -51.93 -0.33 0.56 16 LS Contribution 275.84 15.07 4.16 4.16 Total: -1.00 -29.66 275.84 -8.01 -37.67 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -6.28 Total: -3.56 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -0.51 Total: -15.74 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: -0.36 Total: -39.46 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.66 -8.01 -37.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042240517.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.713 kcal (2) G-P(sol) polarization free energy of solvation -29.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds