Wall clock time and date at job start Sun Mar 29 2020 21:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47134 * 2 1 4 4 C 1.53002 * 109.46972 * 119.99215 * 2 1 3 5 5 C 1.53002 * 109.47128 * 60.00146 * 4 2 1 6 6 C 1.52997 * 109.46978 * 59.99726 * 5 4 2 7 7 C 1.53002 * 109.47415 * 300.00098 * 6 5 4 8 8 H 1.09002 * 109.47070 * 300.00053 * 7 6 5 9 9 N 1.46899 * 109.47394 * 180.02562 * 7 6 5 10 10 C 1.46901 * 111.00056 * 183.95896 * 9 7 6 11 11 C 1.46904 * 111.00029 * 59.99847 * 9 7 6 12 12 C 1.50697 * 109.47025 * 189.99877 * 11 9 7 13 13 H 1.07997 * 120.00242 * 0.02562 * 12 11 9 14 14 C 1.37874 * 120.00006 * 180.02562 * 12 11 9 15 15 N 1.31513 * 119.99732 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00282 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46887 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47446 * 120.00231 * 16 14 12 19 19 H 1.48506 * 109.46734 * 240.00449 * 16 14 12 20 20 C 1.52992 * 109.47224 * 239.99165 * 2 1 3 21 21 H 1.09004 * 109.47298 * 300.00609 * 1 2 3 22 22 H 1.09001 * 109.46993 * 60.00194 * 1 2 3 23 23 H 1.09004 * 109.47552 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00487 * 4 2 1 25 25 H 1.09002 * 109.47596 * 180.02562 * 4 2 1 26 26 H 1.09002 * 109.47097 * 299.99925 * 5 4 2 27 27 H 1.08998 * 109.47844 * 180.02562 * 5 4 2 28 28 H 1.09000 * 109.47140 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.47497 * 60.00450 * 6 5 4 30 30 H 1.08997 * 109.47290 * 59.99585 * 10 9 7 31 31 H 1.09001 * 109.47028 * 179.97438 * 10 9 7 32 32 H 1.09001 * 109.46536 * 299.99508 * 10 9 7 33 33 H 1.08998 * 109.46911 * 310.00317 * 11 9 7 34 34 H 1.08995 * 109.46403 * 70.00169 * 11 9 7 35 35 H 0.97002 * 120.00107 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.47103 * 180.02562 * 20 2 1 37 37 H 1.08998 * 109.46862 * 60.00859 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.5299 -2.1636 1.2495 6 6 2.0399 -2.8850 0.0004 7 6 1.5300 -2.1639 -1.2490 8 1 0.4400 -2.1639 -1.2490 9 7 2.0191 -2.8568 -2.4483 10 6 1.6270 -2.1384 -3.6682 11 6 1.5476 -4.2477 -2.4818 12 6 2.2593 -4.9930 -3.5814 13 1 2.9892 -4.4845 -4.1938 14 6 1.9787 -6.3241 -3.8056 15 7 1.0895 -6.9433 -3.0602 16 14 2.8613 -7.2482 -5.1681 17 1 3.8058 -6.3319 -5.8563 18 1 3.6130 -8.3891 -4.5862 19 1 1.8663 -7.7580 -6.1455 20 6 2.0400 -0.7214 -1.2491 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.6766 -0.2072 2.1393 25 1 3.1299 -0.7208 1.2497 26 1 0.4399 -2.1636 1.2495 27 1 1.8928 -2.6773 2.1398 28 1 1.6763 -3.9125 0.0003 29 1 3.1300 -2.8850 0.0004 30 1 2.0481 -1.1332 -3.6491 31 1 2.0023 -2.6726 -4.5410 32 1 0.5400 -2.0761 -3.7195 33 1 1.7568 -4.7254 -1.5247 34 1 0.4739 -4.2628 -2.6686 35 1 0.8917 -7.8797 -3.2181 36 1 3.1300 -0.7218 -1.2488 37 1 1.6767 -0.2076 -2.1391 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042240517.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:18 Heat of formation + Delta-G solvation = -38.256008 kcal Electronic energy + Delta-G solvation = -14844.324921 eV Core-core repulsion = 12619.779001 eV Total energy + Delta-G solvation = -2224.545920 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.50750 -37.23094 -34.62925 -32.71102 -30.82900 -29.08900 -27.65414 -26.43516 -23.91407 -22.87874 -21.41159 -19.47511 -18.58134 -17.04342 -16.64258 -15.97586 -15.40903 -15.23058 -14.86046 -14.71922 -14.36835 -13.89227 -13.55218 -13.49996 -13.09465 -12.81561 -12.71624 -12.41807 -12.40075 -12.15331 -12.08363 -11.86349 -11.75469 -11.30388 -11.20557 -10.89968 -10.73322 -10.53275 -8.96565 -8.20973 -6.31003 1.39444 1.40137 1.54069 2.39585 3.10914 3.30467 3.82347 3.84085 4.10508 4.29824 4.37704 4.48015 4.50423 4.52893 4.59083 4.68156 4.73973 4.84597 4.96706 5.04002 5.05180 5.14495 5.15762 5.20368 5.26380 5.30205 5.33886 5.41837 5.47582 5.52044 5.63739 5.68589 6.08088 6.38435 6.70727 6.86266 7.38600 8.90386 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.052278 B = 0.007416 C = 0.006987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.467197 B = 3774.710978 C = 4006.491585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 H 0.089 0.911 4 C -0.108 4.108 5 C -0.114 4.114 6 C -0.110 4.110 7 C 0.084 3.916 8 H 0.018 0.982 9 N -0.548 5.548 10 C 0.040 3.960 11 C 0.206 3.794 12 C -0.524 4.524 13 H 0.062 0.938 14 C -0.001 4.001 15 N -0.936 5.936 16 Si 0.971 3.029 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.278 1.278 20 C -0.100 4.100 21 H 0.069 0.931 22 H 0.052 0.948 23 H 0.042 0.958 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.033 0.967 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.004 0.996 33 H 0.014 0.986 34 H -0.049 1.049 35 H 0.264 0.736 36 H 0.064 0.936 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.753 13.578 6.544 15.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 H 0.108 0.892 4 C -0.145 4.145 5 C -0.151 4.151 6 C -0.148 4.148 7 C -0.024 4.024 8 H 0.036 0.964 9 N -0.272 5.272 10 C -0.109 4.109 11 C 0.080 3.920 12 C -0.562 4.562 13 H 0.080 0.920 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.795 3.205 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.204 1.204 20 C -0.138 4.138 21 H 0.088 0.912 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.099 0.901 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.023 0.977 33 H 0.032 0.968 34 H -0.031 1.031 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.186 13.410 6.582 14.985 hybrid contribution -0.825 -1.165 -0.805 1.639 sum 0.360 12.245 5.777 13.545 Atomic orbital electron populations 1.21931 0.95476 1.01282 1.02024 1.21105 0.95843 0.99514 0.93973 0.89237 1.21552 1.00739 0.94355 0.97888 1.21543 1.00666 0.96595 0.96344 1.21569 1.00692 0.97988 0.94562 1.21690 0.95583 0.94884 0.90267 0.96443 1.62102 1.60053 1.02809 1.02255 1.22237 0.96747 0.98667 0.93217 1.19426 0.91038 0.85165 0.96417 1.21543 1.22677 0.95568 1.16444 0.91996 1.25946 0.96096 0.98571 0.99227 1.70103 1.34768 1.11437 1.41324 0.85312 0.78379 0.78272 0.78516 1.18725 1.20277 1.20351 1.21623 1.00852 0.92827 0.98516 0.91208 0.92909 0.93936 0.90110 0.91717 0.92151 0.91220 0.94835 0.92275 0.89864 0.92695 0.97741 0.96792 1.03115 0.92722 0.91686 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.50 71.98 0.61 -2.69 16 2 C -0.09 -1.90 3.19 -10.80 -0.03 -1.93 16 3 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.11 -2.33 5.45 30.60 0.17 -2.16 16 5 C -0.11 -3.06 5.65 30.59 0.17 -2.88 16 6 C -0.11 -3.99 5.00 30.59 0.15 -3.84 16 7 C 0.08 3.14 1.67 44.92 0.07 3.21 16 8 H 0.02 0.70 6.43 -2.39 -0.02 0.69 16 9 N -0.55 -24.97 4.62 -901.61 -4.17 -29.14 16 10 C 0.04 1.60 8.92 127.69 1.14 2.74 16 11 C 0.21 11.51 4.54 85.56 0.39 11.90 16 12 C -0.52 -30.86 8.46 25.60 0.22 -30.64 16 13 H 0.06 3.58 7.12 -2.91 -0.02 3.56 16 14 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 15 N -0.94 -57.85 13.29 21.45 0.28 -57.57 16 16 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 17 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 20 C -0.10 -2.88 4.37 30.59 0.13 -2.75 16 21 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 22 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.04 1.11 4.81 -2.39 -0.01 1.10 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.63 6.43 -2.39 -0.02 1.61 16 27 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.03 1.43 6.20 -2.39 -0.01 1.41 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.08 2.76 6.24 -2.39 -0.01 2.74 16 31 H 0.05 2.39 6.76 -2.39 -0.02 2.38 16 32 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.01 0.84 5.83 -2.39 -0.01 0.83 16 34 H -0.05 -3.00 8.12 -2.39 -0.02 -3.02 16 35 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 1.76 6.35 -2.39 -0.02 1.75 16 Total: -1.00 -65.38 275.84 2.65 -62.73 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.02 Total: 5.21 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 3.48 Total: -28.63 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -3.88 Total: -86.71 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -65.38 2.65 -62.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042240517.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.476 kcal (2) G-P(sol) polarization free energy of solvation -65.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds