Wall clock time and date at job start Sun Mar 29 2020 21:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47367 * 2 1 4 4 C 1.53003 * 109.46826 * 120.00176 * 2 1 3 5 5 C 1.53007 * 109.46826 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47051 * 299.99593 * 5 4 2 7 7 C 1.53004 * 109.47320 * 60.00073 * 6 5 4 8 8 H 1.08999 * 109.46771 * 59.99969 * 7 6 5 9 9 N 1.46897 * 109.47112 * 180.02562 * 7 6 5 10 10 C 1.46897 * 111.00116 * 58.95810 * 9 7 6 11 11 C 1.46899 * 110.99920 * 294.99691 * 9 7 6 12 12 C 1.50703 * 109.47180 * 190.00220 * 11 9 7 13 13 H 1.07994 * 119.99603 * 0.02562 * 12 11 9 14 14 C 1.37875 * 119.99838 * 180.02562 * 12 11 9 15 15 N 1.31513 * 120.00380 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99848 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47261 * 239.99776 * 16 14 12 19 19 H 1.48500 * 109.47454 * 119.99769 * 16 14 12 20 20 C 1.52999 * 109.46878 * 300.00155 * 7 6 5 21 21 H 1.08994 * 109.47014 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46942 * 300.00302 * 1 2 3 23 23 H 1.09000 * 109.46555 * 60.00137 * 1 2 3 24 24 H 1.08997 * 109.46970 * 299.99505 * 4 2 1 25 25 H 1.08999 * 109.47291 * 59.99777 * 4 2 1 26 26 H 1.08994 * 109.47014 * 59.99530 * 5 4 2 27 27 H 1.09000 * 109.46555 * 179.97438 * 5 4 2 28 28 H 1.08999 * 109.47224 * 300.00319 * 6 5 4 29 29 H 1.08994 * 109.47115 * 180.02562 * 6 5 4 30 30 H 1.09007 * 109.46816 * 296.04086 * 10 9 7 31 31 H 1.08995 * 109.47206 * 56.04315 * 10 9 7 32 32 H 1.09007 * 109.46760 * 176.04961 * 10 9 7 33 33 H 1.09005 * 109.47198 * 70.00417 * 11 9 7 34 34 H 1.08998 * 109.47329 * 310.00364 * 11 9 7 35 35 H 0.97001 * 119.99667 * 0.02562 * 15 14 12 36 36 H 1.09011 * 109.46877 * 179.97438 * 20 7 6 37 37 H 1.08999 * 109.47268 * 299.99510 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5701 -0.7208 1.2496 6 6 4.0806 -1.4417 0.0004 7 6 3.5706 -0.7205 -1.2489 8 1 3.9336 0.3073 -1.2487 9 7 4.0603 -1.4130 -2.4483 10 6 3.6097 -2.8110 -2.4697 11 6 5.5238 -1.3299 -2.5435 12 6 5.9685 -1.8292 -3.8941 13 1 5.2370 -2.1734 -4.6101 14 6 7.3092 -1.8466 -4.2154 15 7 8.1999 -1.4270 -3.3435 16 14 7.8603 -2.4648 -5.8897 17 1 6.6729 -2.8763 -6.6810 18 1 8.7654 -3.6290 -5.7143 19 1 8.5809 -1.3811 -6.6050 20 6 2.0406 -0.7210 -1.2492 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 1.6767 -0.2074 2.1392 25 1 1.6766 -1.7490 1.2493 26 1 3.9330 0.3070 1.2498 27 1 3.9333 -1.2342 2.1398 28 1 3.7176 -2.4694 0.0002 29 1 5.1705 -1.4417 0.0009 30 1 4.0458 -3.3463 -1.6262 31 1 2.5226 -2.8436 -2.3980 32 1 3.9267 -3.2806 -3.4010 33 1 5.9741 -1.9434 -1.7630 34 1 5.8379 -0.2938 -2.4177 35 1 7.9136 -1.1057 -2.4742 36 1 1.6773 -0.2068 -2.1391 37 1 1.6776 -1.7488 -1.2494 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042240519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:22 Heat of formation + Delta-G solvation = -28.530887 kcal Electronic energy + Delta-G solvation = -14759.386795 eV Core-core repulsion = 12535.262588 eV Total energy + Delta-G solvation = -2224.124207 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.17850 -35.75964 -32.80345 -31.89348 -29.28839 -26.84205 -26.17084 -24.74592 -22.12698 -21.74144 -19.96516 -18.97598 -16.67873 -15.39530 -14.75279 -14.50717 -14.17046 -13.76346 -13.68700 -13.11676 -13.01732 -12.58440 -12.27540 -11.73088 -11.56928 -11.38811 -11.22185 -10.95934 -10.86810 -10.71241 -10.58650 -10.34430 -10.17351 -10.08960 -9.92490 -9.69988 -8.61220 -8.32805 -7.18554 -6.33153 -4.01196 3.46449 3.50621 3.64590 4.53807 4.73295 4.81822 4.96991 5.22657 5.31098 5.35766 5.43196 5.59769 5.62197 5.75640 5.77801 5.79486 5.92583 5.94978 6.05221 6.12747 6.15075 6.26658 6.32243 6.38441 6.45672 6.49845 6.62089 6.74429 6.78602 7.08093 7.19226 7.87885 8.07318 8.39824 8.64888 8.92147 9.69552 11.06144 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.057039 B = 0.006994 C = 0.006583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.773837 B = 4002.685214 C = 4252.246556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.111 4.111 5 C -0.114 4.114 6 C -0.152 4.152 7 C 0.084 3.916 8 H 0.071 0.929 9 N -0.529 5.529 10 C 0.035 3.965 11 C 0.182 3.818 12 C -0.586 4.586 13 H 0.057 0.943 14 C 0.012 3.988 15 N -0.917 5.917 16 Si 1.077 2.923 17 H -0.289 1.289 18 H -0.288 1.288 19 H -0.287 1.287 20 C -0.104 4.104 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.013 0.987 31 H 0.048 0.952 32 H 0.071 0.929 33 H -0.017 1.017 34 H 0.017 0.983 35 H 0.267 0.733 36 H 0.066 0.934 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.503 0.967 7.710 14.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.149 4.149 5 C -0.153 4.153 6 C -0.192 4.192 7 C -0.026 4.026 8 H 0.089 0.911 9 N -0.252 5.252 10 C -0.114 4.114 11 C 0.057 3.943 12 C -0.625 4.625 13 H 0.075 0.925 14 C -0.191 4.191 15 N -0.554 5.554 16 Si 0.906 3.094 17 H -0.215 1.215 18 H -0.215 1.215 19 H -0.214 1.214 20 C -0.142 4.142 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.032 0.968 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.001 0.999 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.363 0.934 6.319 13.035 hybrid contribution -0.904 -0.138 1.751 1.976 sum -12.267 0.796 8.070 14.705 Atomic orbital electron populations 1.21809 0.95575 1.01525 1.01268 1.21135 0.95012 0.99730 0.95236 0.91395 1.21583 0.95724 1.00362 0.97211 1.21473 0.95365 1.00642 0.97773 1.22233 1.01174 1.00008 0.95742 1.21703 0.94230 0.98232 0.88386 0.91077 1.62243 1.14549 1.13521 1.34852 1.22255 0.98128 0.89994 1.00985 1.19826 0.81788 0.95781 0.96953 1.22060 0.94439 1.45805 1.00203 0.92482 1.25846 0.92976 0.95507 1.04760 1.70734 1.36513 1.40447 1.07733 0.83427 0.75187 0.76430 0.74355 1.21473 1.21499 1.21366 1.21649 0.95220 1.00401 0.96890 0.92920 0.93100 0.92735 0.92557 0.92316 0.92226 0.92620 0.92123 0.91824 0.96826 0.93348 0.91076 0.99945 0.96505 0.92324 0.91552 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.20 37.16 0.34 -1.17 16 2 C -0.09 -1.15 2.72 -90.61 -0.25 -1.39 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 4 C -0.11 -1.34 5.20 -26.73 -0.14 -1.48 16 5 C -0.11 -1.56 5.92 -26.73 -0.16 -1.72 16 6 C -0.15 -2.59 4.51 -26.73 -0.12 -2.71 16 7 C 0.08 1.53 2.23 -67.71 -0.15 1.38 16 8 H 0.07 1.37 8.03 -51.93 -0.42 0.95 16 9 N -0.53 -11.79 4.74 -236.33 -1.12 -12.91 16 10 C 0.03 0.71 8.55 60.06 0.51 1.22 16 11 C 0.18 4.83 3.47 -4.98 -0.02 4.81 16 12 C -0.59 -17.02 8.51 -34.44 -0.29 -17.32 16 13 H 0.06 1.67 7.10 -52.49 -0.37 1.29 16 14 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 15 N -0.92 -28.45 13.65 55.43 0.76 -27.69 16 16 Si 1.08 25.88 29.90 -169.99 -5.08 20.79 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 C -0.10 -1.57 4.29 -26.73 -0.11 -1.68 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.03 6.47 -51.93 -0.34 0.70 16 29 H 0.06 1.23 6.75 -51.93 -0.35 0.88 16 30 H 0.01 0.27 6.51 -51.92 -0.34 -0.07 16 31 H 0.05 0.84 6.13 -51.93 -0.32 0.52 16 32 H 0.07 1.56 6.86 -51.92 -0.36 1.20 16 33 H -0.02 -0.47 6.80 -51.93 -0.35 -0.83 16 34 H 0.02 0.48 7.87 -51.93 -0.41 0.07 16 35 H 0.27 8.25 7.22 -40.82 -0.29 7.96 16 36 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 37 H 0.06 0.91 6.34 -51.93 -0.33 0.58 16 LS Contribution 279.04 15.07 4.21 4.21 Total: -1.00 -30.42 279.04 -8.20 -38.62 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -6.48 Total: -3.22 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -0.48 Total: -19.79 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: -0.36 Total: -40.60 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -5.08 Total: 20.79 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.42 -8.20 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042240519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.090 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds