Wall clock time and date at job start Sun Mar 29 2020 21:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47367 * 2 1 4 4 C 1.53003 * 109.46826 * 120.00176 * 2 1 3 5 5 C 1.53007 * 109.46826 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47051 * 299.99593 * 5 4 2 7 7 C 1.53004 * 109.47320 * 60.00073 * 6 5 4 8 8 H 1.08999 * 109.46771 * 59.99969 * 7 6 5 9 9 N 1.46897 * 109.47112 * 180.02562 * 7 6 5 10 10 C 1.46897 * 111.00116 * 58.95810 * 9 7 6 11 11 C 1.46899 * 110.99920 * 294.99691 * 9 7 6 12 12 C 1.50703 * 109.47180 * 190.00220 * 11 9 7 13 13 H 1.07994 * 119.99603 * 0.02562 * 12 11 9 14 14 C 1.37875 * 119.99838 * 180.02562 * 12 11 9 15 15 N 1.31513 * 120.00380 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99848 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47261 * 239.99776 * 16 14 12 19 19 H 1.48500 * 109.47454 * 119.99769 * 16 14 12 20 20 C 1.52999 * 109.46878 * 300.00155 * 7 6 5 21 21 H 1.08994 * 109.47014 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46942 * 300.00302 * 1 2 3 23 23 H 1.09000 * 109.46555 * 60.00137 * 1 2 3 24 24 H 1.08997 * 109.46970 * 299.99505 * 4 2 1 25 25 H 1.08999 * 109.47291 * 59.99777 * 4 2 1 26 26 H 1.08994 * 109.47014 * 59.99530 * 5 4 2 27 27 H 1.09000 * 109.46555 * 179.97438 * 5 4 2 28 28 H 1.08999 * 109.47224 * 300.00319 * 6 5 4 29 29 H 1.08994 * 109.47115 * 180.02562 * 6 5 4 30 30 H 1.09007 * 109.46816 * 296.04086 * 10 9 7 31 31 H 1.08995 * 109.47206 * 56.04315 * 10 9 7 32 32 H 1.09007 * 109.46760 * 176.04961 * 10 9 7 33 33 H 1.09005 * 109.47198 * 70.00417 * 11 9 7 34 34 H 1.08998 * 109.47329 * 310.00364 * 11 9 7 35 35 H 0.97001 * 119.99667 * 0.02562 * 15 14 12 36 36 H 1.09011 * 109.46877 * 179.97438 * 20 7 6 37 37 H 1.08999 * 109.47268 * 299.99510 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5701 -0.7208 1.2496 6 6 4.0806 -1.4417 0.0004 7 6 3.5706 -0.7205 -1.2489 8 1 3.9336 0.3073 -1.2487 9 7 4.0603 -1.4130 -2.4483 10 6 3.6097 -2.8110 -2.4697 11 6 5.5238 -1.3299 -2.5435 12 6 5.9685 -1.8292 -3.8941 13 1 5.2370 -2.1734 -4.6101 14 6 7.3092 -1.8466 -4.2154 15 7 8.1999 -1.4270 -3.3435 16 14 7.8603 -2.4648 -5.8897 17 1 6.6729 -2.8763 -6.6810 18 1 8.7654 -3.6290 -5.7143 19 1 8.5809 -1.3811 -6.6050 20 6 2.0406 -0.7210 -1.2492 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 1.6767 -0.2074 2.1392 25 1 1.6766 -1.7490 1.2493 26 1 3.9330 0.3070 1.2498 27 1 3.9333 -1.2342 2.1398 28 1 3.7176 -2.4694 0.0002 29 1 5.1705 -1.4417 0.0009 30 1 4.0458 -3.3463 -1.6262 31 1 2.5226 -2.8436 -2.3980 32 1 3.9267 -3.2806 -3.4010 33 1 5.9741 -1.9434 -1.7630 34 1 5.8379 -0.2938 -2.4177 35 1 7.9136 -1.1057 -2.4742 36 1 1.6773 -0.2068 -2.1391 37 1 1.6776 -1.7488 -1.2494 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042240519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:22 Heat of formation + Delta-G solvation = -47.444859 kcal Electronic energy + Delta-G solvation = -14760.206966 eV Core-core repulsion = 12535.262588 eV Total energy + Delta-G solvation = -2224.944378 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.56853 -37.31925 -34.90549 -33.07523 -30.79236 -28.71733 -27.30031 -26.61107 -24.04955 -22.93125 -21.23217 -20.38873 -18.88419 -16.95726 -16.27672 -15.74112 -15.66014 -15.44442 -15.27081 -14.76437 -14.37742 -13.96948 -13.48753 -13.31426 -13.18591 -12.88212 -12.71128 -12.55850 -12.45425 -12.28309 -11.92893 -11.89026 -11.80728 -11.35321 -11.14496 -11.07771 -10.74022 -10.58164 -9.02148 -8.69811 -6.40545 1.51659 1.61614 1.78953 2.54333 3.11940 3.21087 3.67756 3.81611 3.98034 4.15142 4.19603 4.31593 4.42943 4.49992 4.55236 4.61862 4.64502 4.77111 4.84444 4.85952 4.94777 4.99695 5.02864 5.04404 5.13754 5.20137 5.24069 5.30152 5.41810 5.45286 5.57464 5.79272 5.99288 6.40100 6.41899 6.65833 7.40504 8.68271 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.057039 B = 0.006994 C = 0.006583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.773837 B = 4002.685214 C = 4252.246556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.065 0.935 4 C -0.106 4.106 5 C -0.110 4.110 6 C -0.146 4.146 7 C 0.080 3.920 8 H 0.054 0.946 9 N -0.542 5.542 10 C 0.040 3.960 11 C 0.197 3.803 12 C -0.600 4.600 13 H 0.054 0.946 14 C -0.039 4.039 15 N -0.939 5.939 16 Si 1.128 2.872 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.278 1.278 20 C -0.095 4.095 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.055 0.945 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.028 0.972 30 H 0.012 0.988 31 H 0.083 0.917 32 H 0.051 0.949 33 H -0.039 1.039 34 H -0.010 1.010 35 H 0.252 0.748 36 H 0.060 0.940 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.423 0.619 7.939 16.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.083 0.917 4 C -0.143 4.143 5 C -0.148 4.148 6 C -0.185 4.185 7 C -0.028 4.028 8 H 0.072 0.928 9 N -0.264 5.264 10 C -0.108 4.108 11 C 0.071 3.929 12 C -0.638 4.638 13 H 0.072 0.928 14 C -0.236 4.236 15 N -0.577 5.577 16 Si 0.948 3.052 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.132 4.132 21 H 0.076 0.924 22 H 0.086 0.914 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.030 0.970 31 H 0.101 0.899 32 H 0.070 0.930 33 H -0.021 1.021 34 H 0.008 0.992 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.316 0.592 6.573 14.861 hybrid contribution -0.333 -0.003 1.723 1.755 sum -13.648 0.590 8.296 15.983 Atomic orbital electron populations 1.21762 0.93485 1.02207 1.02230 1.21123 0.96650 0.99160 0.93886 0.91655 1.21570 0.93811 1.01031 0.97920 1.21461 0.97056 1.00116 0.96215 1.22131 0.98937 1.00407 0.97033 1.21818 0.96707 0.96850 0.87459 0.92798 1.62167 1.11537 1.15092 1.37632 1.22232 1.00132 0.88562 0.99858 1.19476 0.84722 0.93382 0.95362 1.22380 0.94750 1.45606 1.01038 0.92801 1.27475 0.93429 0.94829 1.07876 1.70873 1.37001 1.42099 1.07711 0.82805 0.75746 0.76494 0.70115 1.19500 1.20322 1.20348 1.21590 0.92055 1.01165 0.98417 0.92369 0.91386 0.92631 0.90091 0.91728 0.92384 0.91283 0.92000 0.95356 0.96967 0.89851 0.93024 1.02149 0.99201 0.93876 0.92114 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.20 71.98 0.66 -1.76 16 2 C -0.09 -1.98 2.72 -10.79 -0.03 -2.01 16 3 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 4 C -0.11 -2.21 5.20 30.60 0.16 -2.05 16 5 C -0.11 -2.86 5.92 30.60 0.18 -2.67 16 6 C -0.15 -5.00 4.51 30.59 0.14 -4.86 16 7 C 0.08 2.97 2.23 44.92 0.10 3.07 16 8 H 0.05 2.15 8.03 -2.39 -0.02 2.13 16 9 N -0.54 -24.61 4.74 -901.61 -4.27 -28.88 16 10 C 0.04 1.62 8.55 127.69 1.09 2.71 16 11 C 0.20 10.94 3.47 85.56 0.30 11.23 16 12 C -0.60 -35.62 8.51 25.60 0.22 -35.41 16 13 H 0.05 3.18 7.10 -2.91 -0.02 3.16 16 14 C -0.04 -2.34 5.46 84.65 0.46 -1.87 16 15 N -0.94 -59.74 13.65 21.45 0.29 -59.45 16 16 Si 1.13 51.82 29.90 68.60 2.05 53.87 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 20 C -0.09 -2.70 4.29 30.59 0.13 -2.57 16 21 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 2.08 6.47 -2.39 -0.02 2.06 16 29 H 0.03 1.14 6.75 -2.39 -0.02 1.12 16 30 H 0.01 0.48 6.51 -2.38 -0.02 0.47 16 31 H 0.08 2.75 6.13 -2.39 -0.01 2.74 16 32 H 0.05 2.26 6.86 -2.38 -0.02 2.24 16 33 H -0.04 -2.30 6.80 -2.38 -0.02 -2.31 16 34 H -0.01 -0.60 7.87 -2.39 -0.02 -0.62 16 35 H 0.25 16.35 7.22 -92.71 -0.67 15.68 16 36 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.07 1.82 6.34 -2.39 -0.02 1.81 16 Total: -1.00 -66.85 279.04 2.59 -64.26 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 1.11 Total: 6.40 kcal Atomic # 6 Polarization: -39.61 SS G_CDS: 3.41 Total: -36.20 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -3.98 Total: -88.33 kcal Atomic # 14 Polarization: 51.82 SS G_CDS: 2.05 Total: 53.87 kcal Total: -66.85 2.59 -64.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042240519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.815 kcal (2) G-P(sol) polarization free energy of solvation -66.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds