Wall clock time and date at job start Sun Mar 29 2020 21:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47482 * 2 1 4 4 C 1.46499 * 119.99658 * 90.00117 * 3 2 1 5 5 C 1.50701 * 109.46992 * 90.00121 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 C 1.38606 * 119.99726 * 270.00444 * 3 2 1 14 14 N 1.29693 * 124.94195 * 179.69556 * 13 3 2 15 15 C 1.32122 * 116.85918 * 179.81564 * 14 13 3 16 16 C 1.33320 * 114.58580 * 0.47056 * 15 14 13 17 17 S 1.70963 * 124.95496 * 359.97438 * 13 3 2 18 18 H 1.09005 * 109.46883 * 300.00131 * 1 2 3 19 19 H 1.09005 * 109.47362 * 59.99236 * 1 2 3 20 20 H 1.08993 * 109.47491 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46784 * 240.00274 * 2 1 3 22 22 H 1.08994 * 109.46982 * 120.00586 * 2 1 3 23 23 H 1.09002 * 109.47391 * 330.00112 * 4 3 2 24 24 H 1.09001 * 109.46813 * 210.00168 * 4 3 2 25 25 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 26 26 H 1.08006 * 122.70572 * 180.22301 * 15 14 13 27 27 H 1.07993 * 125.95473 * 179.75841 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7037 6 1 4.3430 1.2307 1.0957 7 6 4.1496 2.3902 2.8775 8 7 3.3496 3.1262 3.6176 9 14 5.9140 2.0971 3.4162 10 1 6.7852 3.1625 2.8587 11 1 5.9893 2.1216 4.8992 12 1 6.3701 0.7742 2.9193 13 6 2.2494 2.0346 -1.2004 14 7 2.6748 3.2546 -1.3122 15 6 2.8436 3.7180 -2.5379 16 6 2.5378 2.8527 -3.5050 17 16 2.0085 1.3520 -2.7492 18 1 -0.3633 0.5139 0.8900 19 1 -0.3634 0.5140 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8932 -0.5138 -0.8900 22 1 1.8933 -0.5139 0.8899 23 1 1.5818 1.6876 2.0284 24 1 2.0957 3.1410 1.1384 25 1 3.6757 3.5166 4.4436 26 1 3.1969 4.7184 -2.7401 27 1 2.6034 3.0392 -4.5667 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454642.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:22 Heat of formation + Delta-G solvation = 48.142310 kcal Electronic energy + Delta-G solvation = -11983.817158 eV Core-core repulsion = 9868.678522 eV Total energy + Delta-G solvation = -2115.138636 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.87874 -36.41602 -32.78189 -30.71916 -28.73374 -26.91193 -24.06864 -23.23485 -21.27283 -18.95692 -17.58799 -16.41483 -15.51158 -14.90218 -14.37561 -14.15752 -13.94624 -13.18945 -12.81260 -12.43253 -11.99832 -11.76924 -11.23131 -11.00113 -10.95943 -10.64125 -10.56262 -10.14901 -9.92202 -9.08096 -8.70568 -8.57797 -8.44622 -6.80883 -6.03181 -4.10576 1.70947 1.84003 2.43773 3.30433 3.36442 3.38976 3.71254 3.78309 4.43034 5.22734 5.28350 5.47209 5.55510 5.69638 5.81382 5.98747 6.15663 6.23412 6.46147 6.72897 6.88794 7.38797 7.74194 7.89853 8.06826 8.20778 8.78345 8.94159 9.53872 11.01911 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.033210 B = 0.010235 C = 0.008767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.918375 B = 2735.122657 C = 3192.990282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.118 3.882 3 N -0.557 5.557 4 C 0.258 3.742 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.355 3.645 14 N -0.551 5.551 15 C 0.100 3.900 16 C -0.335 4.335 17 S 0.021 5.979 18 H 0.062 0.938 19 H 0.054 0.946 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.091 0.909 23 H 0.034 0.966 24 H 0.048 0.952 25 H 0.263 0.737 26 H 0.164 0.836 27 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.078 -4.646 -9.748 11.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.006 4.006 3 N -0.272 5.272 4 C 0.137 3.863 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.200 1.200 13 C -0.016 4.016 14 N -0.277 5.277 15 C -0.052 4.052 16 C -0.477 4.477 17 S 0.268 5.732 18 H 0.081 0.919 19 H 0.073 0.927 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.109 0.891 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.181 0.819 27 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.364 -5.309 -9.238 11.514 hybrid contribution 1.384 0.833 0.154 1.623 sum -2.980 -4.476 -9.084 10.556 Atomic orbital electron populations 1.22231 0.96334 1.01723 1.02637 1.21478 0.93888 0.82287 1.02936 1.46874 1.65206 1.12146 1.02972 1.19406 0.96308 0.93620 0.76953 1.21437 0.96825 1.31960 1.06218 0.92502 1.24910 0.97810 0.94901 0.96318 1.69929 1.35615 1.33439 1.14386 0.86502 0.84774 0.78640 0.77527 1.20553 1.21143 1.19967 1.23788 0.95220 0.91247 0.91349 1.66497 1.26053 1.11237 1.23919 1.21427 0.97678 1.00218 0.85853 1.26074 1.21738 0.96470 1.03432 1.83522 1.69638 1.19331 1.00754 0.91852 0.92727 0.91790 0.91835 0.89093 0.94795 0.93410 0.92699 0.81916 0.82082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 10.24 37.16 0.38 -2.05 15 2 C 0.12 2.01 6.10 -4.04 -0.02 1.98 15 3 N -0.56 -12.06 2.56 -177.40 -0.45 -12.52 15 4 C 0.26 6.67 5.28 -5.19 -0.03 6.64 15 5 C -0.53 -14.78 9.39 -34.44 -0.32 -15.11 15 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 15 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 15 8 N -0.89 -26.35 13.29 55.43 0.74 -25.62 15 9 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 15 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 13 C 0.36 7.56 7.74 -87.68 -0.68 6.88 15 14 N -0.55 -12.50 9.81 -15.21 -0.15 -12.65 15 15 C 0.10 1.84 11.34 -19.14 -0.22 1.62 15 16 C -0.34 -5.42 11.34 29.01 0.33 -5.09 15 17 S 0.02 0.36 21.68 -107.50 -2.33 -1.97 15 18 H 0.06 0.97 8.14 -51.93 -0.42 0.54 15 19 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 20 H 0.06 0.73 8.14 -51.93 -0.42 0.30 15 21 H 0.06 0.98 7.04 -51.93 -0.37 0.61 15 22 H 0.09 1.55 8.07 -51.93 -0.42 1.13 15 23 H 0.03 0.89 8.07 -51.93 -0.42 0.47 15 24 H 0.05 1.38 7.61 -51.93 -0.40 0.98 15 25 H 0.26 7.33 8.31 -40.82 -0.34 7.00 15 26 H 0.16 2.48 8.06 -52.48 -0.42 2.06 15 27 H 0.16 2.07 8.06 -52.49 -0.42 1.65 15 LS Contribution 252.55 15.07 3.81 3.81 Total: -1.00 -30.90 252.55 -7.33 -38.23 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -3.26 Total: -2.67 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -0.66 Total: -3.44 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.13 Total: -50.78 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -2.33 Total: -1.97 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.90 -7.33 -38.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454642.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.371 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds