Wall clock time and date at job start Sun Mar 29 2020 21:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47482 * 2 1 4 4 C 1.46499 * 119.99658 * 90.00117 * 3 2 1 5 5 C 1.50701 * 109.46992 * 90.00121 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 C 1.38606 * 119.99726 * 270.00444 * 3 2 1 14 14 N 1.29693 * 124.94195 * 179.69556 * 13 3 2 15 15 C 1.32122 * 116.85918 * 179.81564 * 14 13 3 16 16 C 1.33320 * 114.58580 * 0.47056 * 15 14 13 17 17 S 1.70963 * 124.95496 * 359.97438 * 13 3 2 18 18 H 1.09005 * 109.46883 * 300.00131 * 1 2 3 19 19 H 1.09005 * 109.47362 * 59.99236 * 1 2 3 20 20 H 1.08993 * 109.47491 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46784 * 240.00274 * 2 1 3 22 22 H 1.08994 * 109.46982 * 120.00586 * 2 1 3 23 23 H 1.09002 * 109.47391 * 330.00112 * 4 3 2 24 24 H 1.09001 * 109.46813 * 210.00168 * 4 3 2 25 25 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 26 26 H 1.08006 * 122.70572 * 180.22301 * 15 14 13 27 27 H 1.07993 * 125.95473 * 179.75841 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7037 6 1 4.3430 1.2307 1.0957 7 6 4.1496 2.3902 2.8775 8 7 3.3496 3.1262 3.6176 9 14 5.9140 2.0971 3.4162 10 1 6.7852 3.1625 2.8587 11 1 5.9893 2.1216 4.8992 12 1 6.3701 0.7742 2.9193 13 6 2.2494 2.0346 -1.2004 14 7 2.6748 3.2546 -1.3122 15 6 2.8436 3.7180 -2.5379 16 6 2.5378 2.8527 -3.5050 17 16 2.0085 1.3520 -2.7492 18 1 -0.3633 0.5139 0.8900 19 1 -0.3634 0.5140 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8932 -0.5138 -0.8900 22 1 1.8933 -0.5139 0.8899 23 1 1.5818 1.6876 2.0284 24 1 2.0957 3.1410 1.1384 25 1 3.6757 3.5166 4.4436 26 1 3.1969 4.7184 -2.7401 27 1 2.6034 3.0392 -4.5667 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454642.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:22 Heat of formation + Delta-G solvation = 29.131034 kcal Electronic energy + Delta-G solvation = -11984.641549 eV Core-core repulsion = 9868.678522 eV Total energy + Delta-G solvation = -2115.963027 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.38938 -37.96357 -34.87173 -32.12115 -30.42645 -28.65170 -25.74850 -24.89392 -22.74301 -20.52149 -19.06949 -18.53874 -17.10461 -16.59902 -16.08778 -15.53114 -15.49497 -14.60001 -14.44827 -14.06459 -13.55187 -13.33765 -13.05966 -12.71669 -12.54375 -12.31841 -12.18014 -11.85239 -11.82325 -10.77299 -10.63481 -10.21172 -9.99417 -8.48064 -8.06143 -6.34947 0.27389 0.38323 1.05980 1.36659 1.38984 1.48830 2.21182 2.30381 2.41698 3.08820 3.84980 4.14280 4.30596 4.48237 4.62798 4.77476 4.84133 4.93192 5.02800 5.19241 5.30563 5.39213 5.66710 6.03774 6.16156 6.35763 6.75496 7.31383 7.38222 8.85764 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.033210 B = 0.010235 C = 0.008767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.918375 B = 2735.122657 C = 3192.990282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.113 3.887 3 N -0.574 5.574 4 C 0.280 3.720 5 C -0.537 4.537 6 H 0.048 0.952 7 C 0.012 3.988 8 N -0.927 5.927 9 Si 0.964 3.036 10 H -0.280 1.280 11 H -0.275 1.275 12 H -0.266 1.266 13 C 0.313 3.687 14 N -0.603 5.603 15 C 0.067 3.933 16 C -0.312 4.312 17 S 0.092 5.908 18 H 0.045 0.955 19 H 0.054 0.946 20 H 0.099 0.901 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.020 0.980 24 H 0.007 0.993 25 H 0.267 0.733 26 H 0.185 0.815 27 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.670 -5.847 -11.584 13.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.009 4.009 3 N -0.290 5.290 4 C 0.157 3.843 5 C -0.576 4.576 6 H 0.066 0.934 7 C -0.187 4.187 8 N -0.567 5.567 9 Si 0.789 3.211 10 H -0.206 1.206 11 H -0.200 1.200 12 H -0.190 1.190 13 C -0.057 4.057 14 N -0.330 5.330 15 C -0.082 4.082 16 C -0.453 4.453 17 S 0.338 5.662 18 H 0.064 0.936 19 H 0.073 0.927 20 H 0.118 0.882 21 H 0.101 0.899 22 H 0.101 0.899 23 H 0.038 0.962 24 H 0.025 0.975 25 H 0.076 0.924 26 H 0.201 0.799 27 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -3.968 -6.525 -11.120 13.490 hybrid contribution 1.220 1.222 0.554 1.813 sum -2.749 -5.303 -10.566 12.138 Atomic orbital electron populations 1.22159 0.94254 1.03720 1.01776 1.21710 0.95568 0.80133 1.03488 1.46711 1.66799 1.13506 1.01983 1.18748 0.94985 0.91650 0.78965 1.21674 0.97832 1.31790 1.06326 0.93394 1.25775 1.02070 0.94536 0.96368 1.70042 1.37582 1.34267 1.14841 0.85466 0.79430 0.78672 0.77532 1.20595 1.19981 1.19007 1.24069 0.96692 0.91947 0.93003 1.66476 1.26794 1.12822 1.26900 1.21770 0.99457 1.01873 0.85143 1.26678 1.18108 0.95496 1.05042 1.83174 1.68001 1.18314 0.96664 0.93588 0.92665 0.88246 0.89867 0.89857 0.96186 0.97513 0.92430 0.79861 0.78030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.38 10.24 71.98 0.74 -3.65 15 2 C 0.11 3.79 6.10 86.38 0.53 4.32 15 3 N -0.57 -25.31 2.56 -715.16 -1.83 -27.14 15 4 C 0.28 15.15 5.28 85.63 0.45 15.60 15 5 C -0.54 -31.09 9.39 25.60 0.24 -30.85 15 6 H 0.05 2.79 7.81 -2.91 -0.02 2.77 15 7 C 0.01 0.67 5.46 84.66 0.46 1.13 15 8 N -0.93 -56.03 13.29 21.45 0.28 -55.74 15 9 Si 0.96 45.18 29.54 68.60 2.03 47.20 15 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 15 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 12 H -0.27 -11.95 7.11 99.48 0.71 -11.25 15 13 C 0.31 13.28 7.74 179.32 1.39 14.67 15 14 N -0.60 -27.66 9.81 -202.03 -1.98 -29.65 15 15 C 0.07 2.39 11.34 83.54 0.95 3.33 15 16 C -0.31 -9.05 11.34 66.71 0.76 -8.29 15 17 S 0.09 2.84 21.68 -56.49 -1.22 1.62 15 18 H 0.04 1.40 8.14 -2.38 -0.02 1.38 15 19 H 0.05 1.49 8.14 -2.38 -0.02 1.47 15 20 H 0.10 1.99 8.14 -2.39 -0.02 1.97 15 21 H 0.08 2.40 7.04 -2.39 -0.02 2.38 15 22 H 0.08 2.85 8.07 -2.39 -0.02 2.84 15 23 H 0.02 1.12 8.07 -2.39 -0.02 1.10 15 24 H 0.01 0.42 7.61 -2.39 -0.02 0.40 15 25 H 0.27 15.12 8.31 -92.71 -0.77 14.35 15 26 H 0.18 5.40 8.06 -2.91 -0.02 5.37 15 27 H 0.20 4.12 8.06 -2.91 -0.02 4.10 15 Total: -1.00 -68.45 252.55 3.93 -64.52 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: 1.15 Total: 2.93 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 5.51 Total: -3.75 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -3.53 Total: -112.53 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.22 Total: 1.62 kcal Total: -68.45 3.93 -64.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454642.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.649 kcal (2) G-P(sol) polarization free energy of solvation -68.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds