Wall clock time and date at job start Sun Mar 29 2020 21:33:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.08997 * 109.47240 * 2 1
4 4 C 1.53000 * 109.47089 * 240.00235 * 2 1 3
5 5 C 1.53001 * 109.46902 * 299.99877 * 4 2 1
6 6 C 1.53000 * 109.47355 * 300.00303 * 5 4 2
7 7 C 1.52992 * 109.47450 * 59.99746 * 6 5 4
8 8 C 1.52999 * 109.47217 * 120.00272 * 2 1 3
9 9 H 1.09000 * 109.47172 * 180.02562 * 8 2 1
10 10 C 1.53004 * 109.46840 * 299.99695 * 8 2 1
11 11 N 1.46901 * 109.46916 * 184.99885 * 10 8 2
12 12 C 1.46905 * 110.99870 * 180.02562 * 11 10 8
13 13 C 1.50697 * 109.47066 * 180.02562 * 12 11 10
14 14 H 1.08000 * 120.00144 * 0.02562 * 13 12 11
15 15 C 1.37881 * 120.00103 * 179.97438 * 13 12 11
16 16 N 1.31512 * 119.99864 * 179.97438 * 15 13 12
17 17 Si 1.86795 * 119.99815 * 0.02562 * 15 13 12
18 18 H 1.48498 * 109.47527 * 89.99455 * 17 15 13
19 19 H 1.48497 * 109.47120 * 209.99666 * 17 15 13
20 20 H 1.48499 * 109.47065 * 329.99353 * 17 15 13
21 21 H 1.09004 * 109.46840 * 300.00008 * 1 2 3
22 22 H 1.08997 * 109.46947 * 59.99909 * 1 2 3
23 23 H 1.08997 * 109.47240 * 180.02562 * 1 2 3
24 24 H 1.08998 * 109.47232 * 180.02562 * 4 2 1
25 25 H 1.08996 * 109.46919 * 59.99771 * 4 2 1
26 26 H 1.09004 * 109.47225 * 179.97438 * 5 4 2
27 27 H 1.09000 * 109.47290 * 60.00191 * 5 4 2
28 28 H 1.09009 * 109.46650 * 299.99944 * 6 5 4
29 29 H 1.08997 * 109.47277 * 179.97438 * 6 5 4
30 30 H 1.08997 * 109.47430 * 180.02562 * 7 6 5
31 31 H 1.09007 * 109.47273 * 59.99947 * 7 6 5
32 32 H 1.09004 * 109.46889 * 65.00266 * 10 8 2
33 33 H 1.08995 * 109.47384 * 304.99906 * 10 8 2
34 34 H 1.00901 * 111.00067 * 303.95263 * 11 10 8
35 35 H 1.09001 * 109.46798 * 300.00327 * 12 11 10
36 36 H 1.08998 * 109.46961 * 60.00043 * 12 11 10
37 37 H 0.97004 * 119.99699 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7212 -1.2493
5 6 1.5301 -2.1637 -1.2493
6 6 2.0400 -2.8850 0.0000
7 6 1.5301 -2.1638 1.2492
8 6 2.0401 -0.7213 1.2492
9 1 3.1301 -0.7209 1.2494
10 6 1.5301 0.0000 2.4985
11 7 2.1159 -0.6194 3.6948
12 6 1.6471 0.0485 4.9165
13 6 2.2682 -0.6123 6.1200
14 1 2.9438 -1.4448 5.9905
15 6 1.9746 -0.1534 7.3867
16 7 2.5162 -0.7304 8.4370
17 14 0.8065 1.2869 7.6108
18 1 -0.5836 0.7814 7.7411
19 1 1.1769 2.0385 8.8368
20 1 0.8978 2.1862 6.4325
21 1 -0.3633 0.5139 0.8900
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0276 0.0005
24 1 3.1300 -0.7216 -1.2491
25 1 1.6767 -0.2073 -2.1392
26 1 1.8930 -2.6774 -2.1395
27 1 0.4401 -2.1637 -1.2493
28 1 3.1301 -2.8850 -0.0001
29 1 1.6763 -3.9125 0.0002
30 1 1.8937 -2.6774 2.1392
31 1 0.4400 -2.1637 1.2492
32 1 0.4438 -0.0769 2.5444
33 1 1.8185 1.0502 2.4548
34 1 1.9167 -1.6081 3.7245
35 1 1.9360 1.0992 4.8897
36 1 0.5617 -0.0285 4.9789
37 1 2.3094 -0.4078 9.3282
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000042862381.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:33:17
Heat of formation + Delta-G solvation = -52.734161 kcal
Electronic energy + Delta-G solvation = -14428.679828 eV
Core-core repulsion = 12203.506088 eV
Total energy + Delta-G solvation = -2225.173739 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 211.163 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.42269 -36.95027 -34.65139 -32.97501 -32.09888 -29.26862 -27.59915 -25.52494
-23.48065 -22.70588 -21.86706 -19.28396 -18.93603 -17.01832 -16.63756 -16.26890
-15.68796 -15.22726 -14.87629 -14.61603 -14.47288 -13.98815 -13.72989 -13.53929
-13.46829 -12.78021 -12.65314 -12.50880 -12.18567 -12.15391 -11.86686 -11.83769
-11.63994 -11.53825 -11.02859 -10.83695 -10.75915 -10.73605 -9.12804 -8.32440
-6.37213 1.32426 1.34887 1.46455 2.32251 3.01298 3.48948 3.78969
3.85883 3.93259 4.29083 4.37055 4.43124 4.51988 4.54837 4.58862
4.69233 4.77474 4.80429 4.86853 4.96248 5.03297 5.05040 5.14563
5.16666 5.24644 5.30537 5.37204 5.43407 5.49391 5.51069 5.58421
5.72313 5.95780 6.55435 6.64890 6.75908 7.28050 8.84453
Molecular weight = 211.16amu
Principal moments of inertia in cm(-1)
A = 0.054463 B = 0.006318 C = 0.005902
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 513.983240 B = 4430.406627 C = 4743.280174
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.083 4.083
3 H 0.067 0.933
4 C -0.110 4.110
5 C -0.117 4.117
6 C -0.115 4.115
7 C -0.118 4.118
8 C -0.072 4.072
9 H 0.063 0.937
10 C 0.061 3.939
11 N -0.692 5.692
12 C 0.174 3.826
13 C -0.531 4.531
14 H 0.036 0.964
15 C 0.008 3.992
16 N -0.947 5.947
17 Si 0.953 3.047
18 H -0.265 1.265
19 H -0.278 1.278
20 H -0.252 1.252
21 H 0.044 0.956
22 H 0.064 0.936
23 H 0.062 0.938
24 H 0.058 0.942
25 H 0.074 0.926
26 H 0.070 0.930
27 H 0.067 0.933
28 H 0.056 0.944
29 H 0.066 0.934
30 H 0.047 0.953
31 H 0.063 0.937
32 H 0.027 0.973
33 H 0.058 0.942
34 H 0.335 0.665
35 H 0.023 0.977
36 H -0.016 1.016
37 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.404 0.637 -20.678 21.382
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.102 4.102
3 H 0.085 0.915
4 C -0.147 4.147
5 C -0.155 4.155
6 C -0.152 4.152
7 C -0.155 4.155
8 C -0.091 4.091
9 H 0.081 0.919
10 C -0.068 4.068
11 N -0.323 5.323
12 C 0.045 3.955
13 C -0.569 4.569
14 H 0.054 0.946
15 C -0.189 4.189
16 N -0.587 5.587
17 Si 0.776 3.224
18 H -0.190 1.190
19 H -0.204 1.204
20 H -0.176 1.176
21 H 0.063 0.937
22 H 0.083 0.917
23 H 0.081 0.919
24 H 0.077 0.923
25 H 0.092 0.908
26 H 0.089 0.911
27 H 0.086 0.914
28 H 0.075 0.925
29 H 0.084 0.916
30 H 0.066 0.934
31 H 0.082 0.918
32 H 0.045 0.955
33 H 0.077 0.923
34 H 0.154 0.846
35 H 0.041 0.959
36 H 0.001 0.999
37 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -4.810 1.012 -20.527 21.108
hybrid contribution -1.004 0.079 0.972 1.399
sum -5.814 1.091 -19.556 20.431
Atomic orbital electron populations
1.21968 0.95000 1.02191 1.01544 1.21074 0.96263 0.98908 0.93989
0.91496 1.21533 1.00428 0.95791 0.96967 1.21562 1.01104 0.95404
0.97383 1.21492 1.00545 0.98930 0.94279 1.21612 1.00635 0.95088
0.98189 1.21091 0.99980 0.94995 0.93001 0.91878 1.22117 0.96073
0.98470 0.90119 1.60433 1.62708 1.07329 1.01824 1.19748 0.92389
0.94993 0.88330 1.21352 1.27633 1.16937 0.90972 0.94551 1.25896
0.97834 0.99917 0.95293 1.70054 1.46004 1.43630 0.99018 0.85634
0.79054 0.79334 0.78410 1.18988 1.20354 1.17616 0.93667 0.91657
0.91946 0.92297 0.90768 0.91096 0.91439 0.92483 0.91572 0.93403
0.91803 0.95526 0.92337 0.84623 0.95922 0.99865 0.92265
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.96 8.15 71.98 0.59 -2.37 16
2 C -0.08 -1.77 2.72 -10.79 -0.03 -1.80 16
3 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16
4 C -0.11 -1.93 5.45 30.59 0.17 -1.76 16
5 C -0.12 -1.97 5.65 30.59 0.17 -1.80 16
6 C -0.11 -2.34 5.92 30.59 0.18 -2.16 16
7 C -0.12 -2.96 4.70 30.59 0.14 -2.82 16
8 C -0.07 -1.94 2.17 -10.79 -0.02 -1.96 16
9 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16
10 C 0.06 2.06 4.64 86.30 0.40 2.46 16
11 N -0.69 -29.68 6.49 -517.92 -3.36 -33.04 16
12 C 0.17 8.71 4.51 85.55 0.39 9.09 16
13 C -0.53 -31.87 9.87 25.60 0.25 -31.62 16
14 H 0.04 2.41 8.06 -2.91 -0.02 2.39 16
15 C 0.01 0.49 5.47 84.66 0.46 0.95 16
16 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16
17 Si 0.95 45.02 27.47 68.60 1.88 46.91 16
18 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16
19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16
20 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16
21 H 0.04 0.99 6.54 -2.38 -0.02 0.98 16
22 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
23 H 0.06 1.20 4.81 -2.39 -0.01 1.19 16
24 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
25 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16
26 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16
27 H 0.07 1.09 6.43 -2.39 -0.02 1.08 16
28 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16
29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16
30 H 0.05 1.38 6.68 -2.39 -0.02 1.37 16
31 H 0.06 1.55 6.43 -2.38 -0.02 1.54 16
32 H 0.03 0.87 6.71 -2.39 -0.02 0.86 16
33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16
34 H 0.34 14.14 6.97 -89.69 -0.63 13.51 16
35 H 0.02 1.15 7.20 -2.39 -0.02 1.13 16
36 H -0.02 -0.79 7.57 -2.39 -0.02 -0.81 16
37 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16
Total: -1.00 -65.50 276.91 1.87 -63.63
By element:
Atomic # 1 Polarization: 15.89 SS G_CDS: 0.35 Total: 16.24 kcal
Atomic # 6 Polarization: -36.48 SS G_CDS: 2.70 Total: -33.78 kcal
Atomic # 7 Polarization: -89.93 SS G_CDS: -3.06 Total: -92.99 kcal
Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.91 kcal
Total: -65.50 1.87 -63.63 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000042862381.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.895 kcal
(2) G-P(sol) polarization free energy of solvation -65.497 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.602 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.629 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.734 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds