Wall clock time and date at job start Sun Mar 29 2020 21:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47240 * 2 1 4 4 C 1.53000 * 109.47089 * 240.00235 * 2 1 3 5 5 C 1.53001 * 109.46902 * 299.99877 * 4 2 1 6 6 C 1.53000 * 109.47355 * 300.00303 * 5 4 2 7 7 C 1.52992 * 109.47450 * 59.99746 * 6 5 4 8 8 C 1.52999 * 109.47217 * 120.00272 * 2 1 3 9 9 H 1.09000 * 109.47172 * 180.02562 * 8 2 1 10 10 C 1.53004 * 109.46840 * 299.99695 * 8 2 1 11 11 N 1.46901 * 109.46916 * 184.99885 * 10 8 2 12 12 C 1.46905 * 110.99870 * 180.02562 * 11 10 8 13 13 C 1.50697 * 109.47066 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00144 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00103 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99864 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 119.99815 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47527 * 89.99455 * 17 15 13 19 19 H 1.48497 * 109.47120 * 209.99666 * 17 15 13 20 20 H 1.48499 * 109.47065 * 329.99353 * 17 15 13 21 21 H 1.09004 * 109.46840 * 300.00008 * 1 2 3 22 22 H 1.08997 * 109.46947 * 59.99909 * 1 2 3 23 23 H 1.08997 * 109.47240 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47232 * 180.02562 * 4 2 1 25 25 H 1.08996 * 109.46919 * 59.99771 * 4 2 1 26 26 H 1.09004 * 109.47225 * 179.97438 * 5 4 2 27 27 H 1.09000 * 109.47290 * 60.00191 * 5 4 2 28 28 H 1.09009 * 109.46650 * 299.99944 * 6 5 4 29 29 H 1.08997 * 109.47277 * 179.97438 * 6 5 4 30 30 H 1.08997 * 109.47430 * 180.02562 * 7 6 5 31 31 H 1.09007 * 109.47273 * 59.99947 * 7 6 5 32 32 H 1.09004 * 109.46889 * 65.00266 * 10 8 2 33 33 H 1.08995 * 109.47384 * 304.99906 * 10 8 2 34 34 H 1.00901 * 111.00067 * 303.95263 * 11 10 8 35 35 H 1.09001 * 109.46798 * 300.00327 * 12 11 10 36 36 H 1.08998 * 109.46961 * 60.00043 * 12 11 10 37 37 H 0.97004 * 119.99699 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0400 -2.8850 0.0000 7 6 1.5301 -2.1638 1.2492 8 6 2.0401 -0.7213 1.2492 9 1 3.1301 -0.7209 1.2494 10 6 1.5301 0.0000 2.4985 11 7 2.1159 -0.6194 3.6948 12 6 1.6471 0.0485 4.9165 13 6 2.2682 -0.6123 6.1200 14 1 2.9438 -1.4448 5.9905 15 6 1.9746 -0.1534 7.3867 16 7 2.5162 -0.7304 8.4370 17 14 0.8065 1.2869 7.6108 18 1 -0.5836 0.7814 7.7411 19 1 1.1769 2.0385 8.8368 20 1 0.8978 2.1862 6.4325 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 3.1300 -0.7216 -1.2491 25 1 1.6767 -0.2073 -2.1392 26 1 1.8930 -2.6774 -2.1395 27 1 0.4401 -2.1637 -1.2493 28 1 3.1301 -2.8850 -0.0001 29 1 1.6763 -3.9125 0.0002 30 1 1.8937 -2.6774 2.1392 31 1 0.4400 -2.1637 1.2492 32 1 0.4438 -0.0769 2.5444 33 1 1.8185 1.0502 2.4548 34 1 1.9167 -1.6081 3.7245 35 1 1.9360 1.0992 4.8897 36 1 0.5617 -0.0285 4.9789 37 1 2.3094 -0.4078 9.3282 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042862381.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:17 Heat of formation + Delta-G solvation = -52.734161 kcal Electronic energy + Delta-G solvation = -14428.679828 eV Core-core repulsion = 12203.506088 eV Total energy + Delta-G solvation = -2225.173739 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.42269 -36.95027 -34.65139 -32.97501 -32.09888 -29.26862 -27.59915 -25.52494 -23.48065 -22.70588 -21.86706 -19.28396 -18.93603 -17.01832 -16.63756 -16.26890 -15.68796 -15.22726 -14.87629 -14.61603 -14.47288 -13.98815 -13.72989 -13.53929 -13.46829 -12.78021 -12.65314 -12.50880 -12.18567 -12.15391 -11.86686 -11.83769 -11.63994 -11.53825 -11.02859 -10.83695 -10.75915 -10.73605 -9.12804 -8.32440 -6.37213 1.32426 1.34887 1.46455 2.32251 3.01298 3.48948 3.78969 3.85883 3.93259 4.29083 4.37055 4.43124 4.51988 4.54837 4.58862 4.69233 4.77474 4.80429 4.86853 4.96248 5.03297 5.05040 5.14563 5.16666 5.24644 5.30537 5.37204 5.43407 5.49391 5.51069 5.58421 5.72313 5.95780 6.55435 6.64890 6.75908 7.28050 8.84453 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054463 B = 0.006318 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.983240 B = 4430.406627 C = 4743.280174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 H 0.067 0.933 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.115 4.115 7 C -0.118 4.118 8 C -0.072 4.072 9 H 0.063 0.937 10 C 0.061 3.939 11 N -0.692 5.692 12 C 0.174 3.826 13 C -0.531 4.531 14 H 0.036 0.964 15 C 0.008 3.992 16 N -0.947 5.947 17 Si 0.953 3.047 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.252 1.252 21 H 0.044 0.956 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.027 0.973 33 H 0.058 0.942 34 H 0.335 0.665 35 H 0.023 0.977 36 H -0.016 1.016 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.404 0.637 -20.678 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 H 0.085 0.915 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.152 4.152 7 C -0.155 4.155 8 C -0.091 4.091 9 H 0.081 0.919 10 C -0.068 4.068 11 N -0.323 5.323 12 C 0.045 3.955 13 C -0.569 4.569 14 H 0.054 0.946 15 C -0.189 4.189 16 N -0.587 5.587 17 Si 0.776 3.224 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.176 1.176 21 H 0.063 0.937 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.154 0.846 35 H 0.041 0.959 36 H 0.001 0.999 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.810 1.012 -20.527 21.108 hybrid contribution -1.004 0.079 0.972 1.399 sum -5.814 1.091 -19.556 20.431 Atomic orbital electron populations 1.21968 0.95000 1.02191 1.01544 1.21074 0.96263 0.98908 0.93989 0.91496 1.21533 1.00428 0.95791 0.96967 1.21562 1.01104 0.95404 0.97383 1.21492 1.00545 0.98930 0.94279 1.21612 1.00635 0.95088 0.98189 1.21091 0.99980 0.94995 0.93001 0.91878 1.22117 0.96073 0.98470 0.90119 1.60433 1.62708 1.07329 1.01824 1.19748 0.92389 0.94993 0.88330 1.21352 1.27633 1.16937 0.90972 0.94551 1.25896 0.97834 0.99917 0.95293 1.70054 1.46004 1.43630 0.99018 0.85634 0.79054 0.79334 0.78410 1.18988 1.20354 1.17616 0.93667 0.91657 0.91946 0.92297 0.90768 0.91096 0.91439 0.92483 0.91572 0.93403 0.91803 0.95526 0.92337 0.84623 0.95922 0.99865 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.15 71.98 0.59 -2.37 16 2 C -0.08 -1.77 2.72 -10.79 -0.03 -1.80 16 3 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 4 C -0.11 -1.93 5.45 30.59 0.17 -1.76 16 5 C -0.12 -1.97 5.65 30.59 0.17 -1.80 16 6 C -0.11 -2.34 5.92 30.59 0.18 -2.16 16 7 C -0.12 -2.96 4.70 30.59 0.14 -2.82 16 8 C -0.07 -1.94 2.17 -10.79 -0.02 -1.96 16 9 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 10 C 0.06 2.06 4.64 86.30 0.40 2.46 16 11 N -0.69 -29.68 6.49 -517.92 -3.36 -33.04 16 12 C 0.17 8.71 4.51 85.55 0.39 9.09 16 13 C -0.53 -31.87 9.87 25.60 0.25 -31.62 16 14 H 0.04 2.41 8.06 -2.91 -0.02 2.39 16 15 C 0.01 0.49 5.47 84.66 0.46 0.95 16 16 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 17 Si 0.95 45.02 27.47 68.60 1.88 46.91 16 18 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 21 H 0.04 0.99 6.54 -2.38 -0.02 0.98 16 22 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.06 1.20 4.81 -2.39 -0.01 1.19 16 24 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.07 1.09 6.43 -2.39 -0.02 1.08 16 28 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.38 6.68 -2.39 -0.02 1.37 16 31 H 0.06 1.55 6.43 -2.38 -0.02 1.54 16 32 H 0.03 0.87 6.71 -2.39 -0.02 0.86 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.34 14.14 6.97 -89.69 -0.63 13.51 16 35 H 0.02 1.15 7.20 -2.39 -0.02 1.13 16 36 H -0.02 -0.79 7.57 -2.39 -0.02 -0.81 16 37 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -65.50 276.91 1.87 -63.63 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.35 Total: 16.24 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 2.70 Total: -33.78 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -3.06 Total: -92.99 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.91 kcal Total: -65.50 1.87 -63.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042862381.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.895 kcal (2) G-P(sol) polarization free energy of solvation -65.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds