Wall clock time and date at job start Sun Mar 29 2020 21:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47224 * 2 1 4 4 C 1.53004 * 109.46719 * 240.00600 * 2 1 3 5 5 C 1.53009 * 109.47036 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46855 * 60.00134 * 5 4 2 7 7 C 1.53004 * 109.47189 * 299.99772 * 6 5 4 8 8 C 1.53001 * 109.47165 * 120.00738 * 2 1 3 9 9 H 1.08994 * 109.47469 * 60.00266 * 8 2 1 10 10 C 1.52995 * 109.46969 * 299.99554 * 8 2 1 11 11 N 1.46906 * 109.46978 * 175.00329 * 10 8 2 12 12 C 1.46901 * 110.99793 * 180.02562 * 11 10 8 13 13 C 1.50701 * 109.46921 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 H 1.09002 * 109.46754 * 299.99083 * 1 2 3 22 22 H 1.08989 * 109.47345 * 59.99607 * 1 2 3 23 23 H 1.09007 * 109.47068 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47573 * 299.99345 * 4 2 1 25 25 H 1.08998 * 109.47678 * 59.99844 * 4 2 1 26 26 H 1.08998 * 109.47081 * 179.97438 * 5 4 2 27 27 H 1.08997 * 109.47208 * 300.00147 * 5 4 2 28 28 H 1.08997 * 109.47652 * 59.99722 * 6 5 4 29 29 H 1.09004 * 109.47221 * 180.02562 * 6 5 4 30 30 H 1.08994 * 109.47480 * 300.00685 * 7 6 5 31 31 H 1.09002 * 109.47330 * 179.97438 * 7 6 5 32 32 H 1.08995 * 109.46859 * 55.00621 * 10 8 2 33 33 H 1.09002 * 109.47639 * 295.00289 * 10 8 2 34 34 H 1.00898 * 110.99995 * 303.95410 * 11 10 8 35 35 H 1.09002 * 109.47401 * 59.99808 * 12 11 10 36 36 H 1.09001 * 109.46874 * 299.99821 * 12 11 10 37 37 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5700 -0.7206 -1.2498 6 6 4.0805 -1.4417 -0.0006 7 6 3.5706 -0.7206 1.2488 8 6 2.0400 -0.7214 1.2492 9 1 1.6768 -1.7490 1.2491 10 6 1.5301 -0.0003 2.4984 11 7 1.9188 -0.7591 3.6948 12 6 1.4445 -0.0952 4.9164 13 6 1.8605 -0.9011 6.1199 14 1 2.4216 -1.8148 5.9903 15 6 1.5258 -0.4714 7.3865 16 7 0.8431 0.6415 7.5443 17 14 2.0422 -1.4699 8.8784 18 1 2.7954 -2.6702 8.4342 19 1 2.9071 -0.6395 9.7546 20 1 0.8350 -1.8936 9.6324 21 1 -0.3633 0.5137 0.8901 22 1 -0.3633 0.5138 -0.8898 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6767 -1.7489 -1.2495 25 1 1.6766 -0.2073 -2.1393 26 1 3.9332 -1.2348 -2.1396 27 1 3.9330 0.3071 -1.2499 28 1 3.7175 -2.4695 -0.0004 29 1 5.1705 -1.4410 -0.0006 30 1 3.9335 0.3072 1.2486 31 1 3.9339 -1.2345 2.1387 32 1 0.4438 0.0779 2.4548 33 1 1.9647 0.9983 2.5445 34 1 1.5820 -1.7089 3.6457 35 1 0.3575 -0.0179 4.8893 36 1 1.8782 0.9028 4.9793 37 1 0.6073 0.9436 8.4354 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042862387.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:20 Heat of formation + Delta-G solvation = -41.713276 kcal Electronic energy + Delta-G solvation = -14289.891052 eV Core-core repulsion = 12065.195214 eV Total energy + Delta-G solvation = -2224.695838 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.98352 -35.09511 -32.79047 -32.29171 -30.54700 -27.13400 -25.95389 -23.99592 -21.75485 -21.01698 -20.52187 -19.48935 -16.37352 -15.08236 -14.73468 -14.54594 -14.37620 -14.19513 -13.72122 -13.27277 -12.59372 -12.50396 -12.20941 -11.77637 -11.66816 -11.37576 -11.31107 -11.16521 -10.75018 -10.73000 -10.63444 -10.60391 -10.14865 -10.00570 -9.74684 -9.58684 -9.07689 -8.45062 -7.18510 -6.00549 -4.02187 3.32581 3.39629 3.45000 4.45315 4.77231 4.86027 4.89086 5.21593 5.28944 5.35424 5.46428 5.53748 5.62948 5.69440 5.72035 5.79030 5.88551 5.95124 6.04426 6.14438 6.19070 6.22480 6.25545 6.39479 6.40983 6.47426 6.61737 6.79746 6.83448 7.31366 7.47575 7.82818 8.17445 8.46243 8.68018 9.07968 9.62755 11.10723 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.051848 B = 0.005914 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.911210 B = 4733.368408 C = 5099.302157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 H 0.067 0.933 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.106 4.106 8 C -0.076 4.076 9 H 0.063 0.937 10 C 0.061 3.939 11 N -0.688 5.688 12 C 0.193 3.807 13 C -0.512 4.512 14 H 0.062 0.938 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 H 0.060 0.940 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.021 0.979 33 H 0.060 0.940 34 H 0.326 0.674 35 H -0.016 1.016 36 H 0.026 0.974 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.157 -2.310 -16.225 16.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.158 4.158 7 C -0.143 4.143 8 C -0.095 4.095 9 H 0.082 0.918 10 C -0.069 4.069 11 N -0.318 5.318 12 C 0.067 3.933 13 C -0.550 4.550 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 H 0.079 0.921 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.039 0.961 33 H 0.079 0.921 34 H 0.142 0.858 35 H 0.002 0.998 36 H 0.044 0.956 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.712 -1.903 -16.041 16.379 hybrid contribution -0.794 -0.541 0.874 1.299 sum 1.918 -2.444 -15.166 15.481 Atomic orbital electron populations 1.21910 0.95664 1.01645 1.01542 1.21139 0.95177 0.99605 0.94658 0.91429 1.21573 0.95500 1.00491 0.97340 1.21538 0.95738 1.00601 0.97757 1.21578 0.99765 0.99388 0.95073 1.21479 0.94831 1.00502 0.97505 1.21175 0.95829 0.99098 0.93411 0.91826 1.22008 0.96747 0.97795 0.90359 1.60647 1.64152 1.05040 1.02005 1.19541 0.92918 0.95119 0.85761 1.21247 1.34562 1.08728 0.90502 0.91944 1.25000 0.95268 0.95243 0.99161 1.69978 1.39351 1.21992 1.22543 0.86436 0.78213 0.80159 0.82564 1.19660 1.21014 1.21124 0.92063 0.93284 0.92957 0.92248 0.92572 0.92720 0.92259 0.92391 0.92541 0.92613 0.90341 0.96144 0.92145 0.85790 0.99798 0.95566 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.85 37.16 0.33 -1.47 16 2 C -0.09 -1.08 2.25 -90.62 -0.20 -1.28 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.11 -1.20 5.20 -26.72 -0.14 -1.34 16 5 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 6 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 7 C -0.11 -1.52 5.09 -26.70 -0.14 -1.65 16 8 C -0.08 -1.11 1.86 -90.59 -0.17 -1.28 16 9 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 10 C 0.06 1.10 4.86 -3.82 -0.02 1.08 16 11 N -0.69 -15.03 5.95 -115.05 -0.68 -15.71 16 12 C 0.19 5.20 5.44 -4.97 -0.03 5.17 16 13 C -0.51 -14.78 9.32 -34.44 -0.32 -15.10 16 14 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 15 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 17 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H 0.06 0.80 6.32 -51.93 -0.33 0.47 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.28 7.75 -51.93 -0.40 0.88 16 32 H 0.02 0.38 6.17 -51.93 -0.32 0.06 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.33 6.85 8.72 -39.29 -0.34 6.50 16 35 H -0.02 -0.45 8.14 -51.93 -0.42 -0.87 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 289.34 15.07 4.36 4.36 Total: -1.00 -29.60 289.34 -8.57 -38.17 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.86 Total: 0.21 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -1.10 Total: -17.38 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.05 Total: -42.31 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.60 -8.57 -38.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042862387.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.544 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds