Wall clock time and date at job start Sun Mar 29 2020 21:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47420 * 2 1 4 4 C 1.53005 * 109.46768 * 119.99782 * 2 1 3 5 5 C 1.53000 * 109.47167 * 60.00016 * 4 2 1 6 6 C 1.53002 * 109.47320 * 59.99830 * 5 4 2 7 7 C 1.53008 * 109.46995 * 299.99845 * 6 5 4 8 8 C 1.53002 * 109.47074 * 239.99557 * 2 1 3 9 9 H 1.08990 * 109.47355 * 180.02562 * 8 2 1 10 10 C 1.53000 * 109.46776 * 60.00090 * 8 2 1 11 11 N 1.46901 * 109.46769 * 174.99873 * 10 8 2 12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.47183 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99585 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00111 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99984 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99870 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47465 * 59.99852 * 17 15 13 19 19 H 1.48504 * 109.46981 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47129 * 299.99804 * 17 15 13 21 21 H 1.08994 * 109.47439 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46964 * 300.00295 * 1 2 3 23 23 H 1.08993 * 109.46700 * 59.99834 * 1 2 3 24 24 H 1.08993 * 109.47016 * 299.99680 * 4 2 1 25 25 H 1.09001 * 109.46946 * 179.97438 * 4 2 1 26 26 H 1.09000 * 109.47090 * 300.00046 * 5 4 2 27 27 H 1.08996 * 109.47224 * 179.97438 * 5 4 2 28 28 H 1.08998 * 109.47141 * 180.02562 * 6 5 4 29 29 H 1.09000 * 109.47312 * 59.99788 * 6 5 4 30 30 H 1.09000 * 109.47044 * 300.00107 * 7 6 5 31 31 H 1.09001 * 109.47171 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47398 * 295.00168 * 10 8 2 33 33 H 1.09001 * 109.47194 * 55.00349 * 10 8 2 34 34 H 1.00899 * 111.00283 * 303.95539 * 11 10 8 35 35 H 1.08995 * 109.47087 * 299.99901 * 12 11 10 36 36 H 1.09002 * 109.46903 * 59.99922 * 12 11 10 37 37 H 0.97003 * 120.00204 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5299 -2.1637 1.2494 6 6 2.0399 -2.8851 0.0002 7 6 1.5299 -2.1639 -1.2492 8 6 2.0401 -0.7214 -1.2492 9 1 3.1300 -0.7218 -1.2490 10 6 1.5300 -0.0001 -2.4984 11 7 2.1158 -0.6195 -3.6948 12 6 1.6479 0.0491 -4.9164 13 6 2.2680 -0.6126 -6.1201 14 1 2.9425 -1.4460 -5.9905 15 6 1.9750 -0.1532 -7.3866 16 7 1.1541 0.8621 -7.5443 17 14 2.7442 -0.9729 -8.8786 18 1 2.3493 -2.4039 -8.9157 19 1 2.2721 -0.2963 -10.1134 20 1 4.2231 -0.8696 -8.7927 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8899 24 1 1.6767 -0.2074 2.1392 25 1 3.1300 -0.7217 1.2491 26 1 0.4399 -2.1637 1.2493 27 1 1.8936 -2.6777 2.1391 28 1 1.6762 -3.9126 0.0000 29 1 3.1299 -2.8851 0.0001 30 1 0.4399 -2.1638 -1.2491 31 1 1.8929 -2.6780 -2.1391 32 1 0.4437 -0.0770 -2.5443 33 1 1.8184 1.0501 -2.4549 34 1 3.1236 -0.6187 -3.6458 35 1 0.5625 -0.0271 -4.9793 36 1 1.9375 1.0996 -4.8892 37 1 0.9482 1.1855 -8.4353 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042862390.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:22 Heat of formation + Delta-G solvation = -37.950211 kcal Electronic energy + Delta-G solvation = -14372.281430 eV Core-core repulsion = 12147.748771 eV Total energy + Delta-G solvation = -2224.532659 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.25759 -35.12705 -32.65030 -31.80398 -30.55278 -27.31396 -26.14614 -23.97944 -22.05345 -21.41168 -20.64626 -18.22683 -16.37696 -15.58310 -14.89558 -14.51027 -14.47596 -13.99869 -13.69614 -13.13761 -12.67350 -12.33163 -12.32927 -11.85833 -11.73052 -11.46413 -11.13534 -11.11607 -10.90218 -10.70982 -10.67104 -10.40576 -10.03656 -9.94192 -9.71594 -9.57960 -9.10829 -8.44283 -7.20220 -5.99994 -4.01875 3.35527 3.39090 3.42431 4.45448 4.81121 4.84731 4.87398 5.25931 5.35679 5.37786 5.44682 5.51522 5.58962 5.67800 5.74237 5.79175 5.94992 5.98036 6.03281 6.10094 6.21132 6.24359 6.31536 6.35337 6.44552 6.49465 6.59727 6.80287 6.87109 7.31494 7.47755 7.82421 8.17782 8.46227 8.67970 9.07618 9.62909 11.11170 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058237 B = 0.005846 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.674869 B = 4788.566726 C = 5073.038475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 H 0.064 0.936 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.107 4.107 8 C -0.077 4.077 9 H 0.063 0.937 10 C 0.063 3.937 11 N -0.688 5.688 12 C 0.194 3.806 13 C -0.513 4.513 14 H 0.061 0.939 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.277 1.277 21 H 0.061 0.939 22 H 0.046 0.954 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.014 0.986 34 H 0.326 0.674 35 H 0.026 0.974 36 H -0.016 1.016 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 -3.379 16.194 16.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 H 0.082 0.918 4 C -0.149 4.149 5 C -0.158 4.158 6 C -0.158 4.158 7 C -0.144 4.144 8 C -0.096 4.096 9 H 0.081 0.919 10 C -0.067 4.067 11 N -0.318 5.318 12 C 0.067 3.933 13 C -0.552 4.552 14 H 0.079 0.921 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.203 1.203 21 H 0.080 0.920 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.032 0.968 34 H 0.142 0.858 35 H 0.044 0.956 36 H 0.002 0.998 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.051 -3.760 16.004 16.439 hybrid contribution 0.831 0.578 -0.862 1.330 sum 0.882 -3.182 15.142 15.497 Atomic orbital electron populations 1.21972 0.95501 1.02084 1.01260 1.21105 0.95989 0.98829 0.94653 0.91766 1.21539 1.00292 0.95743 0.97363 1.21572 1.00885 0.95636 0.97677 1.21573 1.00485 0.98602 0.95107 1.21497 1.00502 0.94981 0.97434 1.21144 0.99607 0.95393 0.93418 0.91903 1.21983 0.99774 0.94602 0.90383 1.60662 1.11941 1.57210 1.02012 1.19531 0.96314 0.91705 0.85729 1.21169 1.27475 1.16040 0.90526 0.92051 1.24994 0.95360 0.95122 0.99131 1.69956 1.35488 1.25662 1.22763 0.86544 0.79461 0.79571 0.81708 1.20162 1.21360 1.20299 0.92026 0.93509 0.92319 0.92569 0.92324 0.91884 0.92854 0.92577 0.92448 0.92247 0.90460 0.91702 0.96794 0.85813 0.95566 0.99808 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.15 37.16 0.30 -1.52 16 2 C -0.09 -1.08 2.72 -90.61 -0.25 -1.32 16 3 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.11 -1.20 5.45 -26.73 -0.15 -1.35 16 5 C -0.12 -1.27 5.65 -26.73 -0.15 -1.42 16 6 C -0.12 -1.42 5.92 -26.73 -0.16 -1.57 16 7 C -0.11 -1.52 4.82 -26.72 -0.13 -1.65 16 8 C -0.08 -1.12 2.11 -90.62 -0.19 -1.31 16 9 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 10 C 0.06 1.14 4.57 -3.82 -0.02 1.12 16 11 N -0.69 -15.05 5.95 -115.05 -0.68 -15.74 16 12 C 0.19 5.23 5.44 -4.97 -0.03 5.20 16 13 C -0.51 -14.85 9.32 -34.44 -0.32 -15.17 16 14 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 17 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H 0.06 0.73 4.81 -51.93 -0.25 0.48 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.77 6.54 -51.93 -0.34 0.43 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.86 6.43 -51.93 -0.33 0.53 16 31 H 0.08 1.26 7.75 -51.93 -0.40 0.86 16 32 H 0.06 1.22 6.71 -51.93 -0.35 0.87 16 33 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.33 6.85 8.72 -39.29 -0.34 6.51 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H -0.02 -0.45 8.14 -51.93 -0.42 -0.88 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 282.77 15.07 4.26 4.26 Total: -1.00 -29.59 282.77 -8.43 -38.03 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.55 Total: 0.58 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -1.18 Total: -17.49 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.05 Total: -42.34 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.59 -8.43 -38.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042862390.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.076 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds